FC876630

Overview
NameFC876630
Unique NameFC876630
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length634
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876630 vs. ExPASy Swiss-Prot
Match: MSBA_THIDA (Lipid A export ATP-binding/permease protein msbA OS=Thiobacillus denitrificans (strain ATCC 25259) GN=msbA PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 1.939e-29
Identity = 72/149 (48.32%), Postives = 96/149 (64.43%), Query Frame = 3
Query:    9 IFSTTIRENIIY-ARHNASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDXXXXXXXXXXXRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTHDSLLAKNGLYVRL 452
            +F+ T+  NI Y ++  AS  E++ A   A+A  FI ++P G DT +G  G+ L+ GQ+QRIAIAR +LKNAPIL+LD           R VQ AL+TL M N+TT++IAHR + +   + IVVL GGRIVE G H  LLAK G Y +L
Sbjct:  425 LFNDTLAHNIAYGSKREASPDEIRAACVAAHAWDFIQAMPDGLDTLIGENGMRLSGGQRQRIAIARAILKNAPILILDEATSALDSESERHVQAALETL-MQNRTTLVIAHRLSTIERANRIVVLEGGRIVETGAHADLLAKQGRYAQL 572          
BLAST of FC876630 vs. ExPASy Swiss-Prot
Match: MSBA_METFK (Lipid A export ATP-binding/permease protein msbA OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=msbA PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 1.939e-29
Identity = 72/154 (46.75%), Postives = 100/154 (64.94%), Query Frame = 3
Query:    9 IFSTTIRENIIYA-RHNASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDXXXXXXXXXXXRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTHDSLLAKNGLYVRLMQPHY 467
            +F+ T+  NI Y    NASE +V  AA+ A+A  FI  LP+G  + +G RGV L+ GQ+QR+AIAR +LKNAPILLLD           R VQ ALD L M N+T+I+IAHR + + + D I+V+  GRI+E G+H+ LLA +G Y +L +  +
Sbjct:  430 LFNDTVFNNIAYGVLRNASEEDVIAAAKAAHAWDFIQQLPNGLQSEIGDRGVRLSGGQRQRLAIARAILKNAPILLLDEATSALDTESERHVQAALDEL-MQNRTSIVIAHRLSTIENADRIMVMEQGRIIEGGSHEELLALDGHYAKLYRKQF 582          
BLAST of FC876630 vs. ExPASy Swiss-Prot
Match: MSBA_NEIG1 (Lipid A export ATP-binding/permease protein msbA OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090) GN=msbA PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.532e-29
Identity = 66/148 (44.59%), Postives = 95/148 (64.19%), Query Frame = 3
Query:    9 IFSTTIRENIIYARHNASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDXXXXXXXXXXXRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTHDSLLAKNGLYVRL 452
            +F  T+ EN+ Y+R +A EAEV  A + AN    I + P G    +G  G +L+ GQ+QR+AIAR +LK+APILLLD           R+VQ+AL+ L M N+T I++AHR   +   D I+V++GG+I+E+GTHD L+ +NG Y  L
Sbjct:  462 LFDDTLFENVRYSRPDAGEAEVLSALQAANLQSLIDASPLGLHQPIGSNGSNLSGGQRQRVAIARAILKDAPILLLDEATSALDNESERLVQQALERL-MENRTGIIVAHRLTTVESADRIIVMDGGKIIEQGTHDQLMFQNGYYTML 608          
BLAST of FC876630 vs. ExPASy Swiss-Prot
Match: ABCB8_XENTR (ATP-binding cassette sub-family B member 8, mitochondrial OS=Xenopus tropicalis GN=abcb8 PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.532e-29
Identity = 73/150 (48.67%), Postives = 96/150 (64.00%), Query Frame = 3
Query:    9 IFSTTIRENIIYARHNASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDXXXXXXXXXXXRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTHDSLLAKNGLYVRLMQ 458
            +F TTI ENI + R +A++AEV EAA  ANA  FI S P GY+T +G RGV L+ GQKQR+AIAR +LK+  IL+LD           R VQ ALD    G +T ++IAHR + +   D IVVL+ G++ E GTH  LL + GLY  L++
Sbjct:  530 LFGTTIIENIRFGRPDATDAEVHEAAIQANADSFIRSFPEGYNTMLGERGVTLSGGQKQRVAIARALLKDPKILILDEATSALDTESERAVQVALDRARSG-RTVLVIAHRLSTISEADFIVVLSKGQVAEFGTHQDLLRRGGLYADLIR 678          
BLAST of FC876630 vs. ExPASy Swiss-Prot
Match: ABCBA_MOUSE (ATP-binding cassette sub-family B member 10, mitochondrial OS=Mus musculus GN=Abcb10 PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.307e-29
Identity = 73/153 (47.71%), Postives = 99/153 (64.71%), Query Frame = 3
Query:    9 IFSTTIRENIIYARHNASEA---EVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDXXXXXXXXXXXRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTHDSLLAK-NGLYVRLM 455
            +FS ++ ENI Y   N S     +V+ AA +ANA  FI S P G+DT VG +G+ L+ GQKQRIAIAR +LKN  ILLLD            +VQEALD L+ G +T ++IAHR + +++ + + VL+ G+I E GTH+ LL K NGLY +LM
Sbjct:  544 LFSCSVAENIAYGADNLSSVTAQQVERAAEVANAAEFIRSFPQGFDTVVGEKGILLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEHLVQEALDRLMEG-RTVLIIAHRLSTIKNANFVAVLDHGKICEHGTHEELLLKPNGLYRKLM 695          
BLAST of FC876630 vs. ExPASy Swiss-Prot
Match: Y015_MYCGE (Putative ABC transporter ATP-binding protein MG015 OS=Mycoplasma genitalium GN=MG015 PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 4.319e-29
Identity = 63/150 (42.00%), Postives = 98/150 (65.33%), Query Frame = 3
Query:    9 IFSTTIRENIIYARHNASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDXXXXXXXXXXXRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTHDSLLAKNGLYVRLMQ 458
            +FS TI+ENI   R +A++ E+  A + ANAH FI  LP GYDT++  +   L+ G++Q + IAR V++NAP+LLLD           +++QE++  L M NKT+ +I+HR +++R    I+V+N G+++E G HD L+ +NG Y RL Q
Sbjct:  437 LFSGTIKENIRLGRQDATDDEIIAACKTANAHDFIMRLPKGYDTYISNKADYLSVGERQLLTIARAVIRNAPVLLLDEATSSVDVHSEKLIQESIGRL-MKNKTSFIISHRLSIIRDATLIMVINDGKVLEMGNHDQLMKQNGFYARLKQ 585          
BLAST of FC876630 vs. ExPASy Swiss-Prot
Match: AB28B_ARATH (ABC transporter B family member 28 OS=Arabidopsis thaliana GN=ABCB28 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 4.319e-29
Identity = 71/151 (47.02%), Postives = 100/151 (66.23%), Query Frame = 3
Query:    9 IFSTTIRENIIYARHN--ASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDXXXXXXXXXXXRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTHDSLLAKNGLYVRLM 455
            +FS ++ ENI Y   N   S+ ++ +AA+ ANAH FI SLP GYDT VG RG  L+ GQ+QR+AIAR +LKNAPIL+LD           R+VQ AL+ L M ++TT++IAHR + ++  + I V + G+I+E GTH  L+A+ G Y  L+
Sbjct:  557 LFSLSVAENIAYGLPNEHVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRVAIARSLLKNAPILILDEATSALDAVSERLVQSALNRL-MKDRTTLVIAHRLSTVQSANQIAVCSDGKIIELGTHSELVAQKGSYASLV 706          
BLAST of FC876630 vs. ExPASy Swiss-Prot
Match: MSBA_ERWCT (Lipid A export ATP-binding/permease protein msbA OS=Erwinia carotovora subsp. atroseptica GN=msbA PE=3 SV=2)

HSP 1 Score: 127.102 bits (318), Expect = 7.366e-29
Identity = 68/156 (43.59%), Postives = 100/156 (64.10%), Query Frame = 3
Query:    9 IFSTTIRENIIYARH-NASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDXXXXXXXXXXXRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTHDSLLAKNGLYVRLMQPHYGK 473
            +F+ TI  NI YAR+ N S  E++ AA++A A  FI+ + HG DT +G  GV L+ GQ+QRIAIAR +L+++PIL+LD           R +Q ALD L   ++T ++IAHR + +   D I+V+  GRI+E G H +LLA NG Y +L +  +G+
Sbjct:  428 LFNDTIANNIAYARNENYSREEIERAAKMAYAMDFINKMEHGLDTVIGENGVMLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDEL-QKDRTALVIAHRLSTIEKADEILVVEDGRIIERGNHTALLATNGAYAQLHRMQFGE 582          
BLAST of FC876630 vs. ExPASy Swiss-Prot
Match: MDR3_HUMAN (Multidrug resistance protein 3 OS=Homo sapiens GN=ABCB4 PE=1 SV=2)

HSP 1 Score: 127.102 bits (318), Expect = 7.366e-29
Identity = 71/149 (47.65%), Postives = 93/149 (62.42%), Query Frame = 3
Query:    9 IFSTTIRENIIYARHNASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDXXXXXXXXXXXRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTHDSLLAKNGLYVRLM 455
            +FSTTI ENI Y R N +  E+K+A + ANA+ FI  LP  +DT VG RG  L+ GQKQRIAIAR +++N  ILLLD             VQ ALD    G +TTI+IAHR + +R+ D I     G IVE+G+H  L+ K G+Y +L+
Sbjct:  481 LFSTTIAENICYGRGNVTMDEIKKAVKEANAYEFIMKLPQKFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAEVQAALDKAREG-RTTIVIAHRLSTVRNADVIAGFEDGVIVEQGSHSELMKKEGVYFKLV 628          

HSP 2 Score: 124.405 bits (311), Expect = 4.775e-28
Identity = 69/156 (44.23%), Postives = 95/156 (60.90%), Query Frame = 3
Query:    9 IFSTTIRENIIYARHN--ASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDXXXXXXXXXXXRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTHDSLLAKNGLYVRLMQPHYG 470
            +F  +I ENI Y  ++   S+ E+  AA+ AN H FI +LPH Y+T VG +G  L+ GQKQRIAIAR +++   ILLLD           +VVQEALD    G +T I+IAHR + +++ D IVV   GR+ E GTH  LLA+ G+Y  ++    G
Sbjct: 1128 LFDCSIAENIAYGDNSRVVSQDEIVSAAKAANIHPFIETLPHKYETRVGDKGTQLSGGQKQRIAIARALIRQPQILLLDEATSALDTESEKVVQEALDKAREG-RTCIVIAHRLSTIQNADLIVVFQNGRVKEHGTHQQLLAQKGIYFSMVSVQAG 1282          
BLAST of FC876630 vs. ExPASy Swiss-Prot
Match: MDR2_RAT (Multidrug resistance protein 2 OS=Rattus norvegicus GN=Abcb4 PE=1 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 7.366e-29
Identity = 72/149 (48.32%), Postives = 93/149 (62.42%), Query Frame = 3
Query:    9 IFSTTIRENIIYARHNASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDXXXXXXXXXXXRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTHDSLLAKNGLYVRLM 455
            +FSTTI ENI Y R N +  E+K+A + ANA+ FI  LP  +DT VG RG  L+ GQKQRIAIAR +++N  ILLLD             VQ ALD    G +TTI+IAHR + +R+ D I     G IVE+G+H  L+ K G+Y RL+
Sbjct:  478 LFSTTIAENIRYGRGNVTMDEIKKAVKEANAYDFIMKLPQKFDTLVGDRGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAEVQAALDKAREG-RTTIVIAHRLSTVRNADVIAGFEDGVIVEQGSHSELIKKEGIYFRLV 625          

HSP 2 Score: 117.857 bits (294), Expect = 4.469e-26
Identity = 65/156 (41.67%), Postives = 96/156 (61.54%), Query Frame = 3
Query:    9 IFSTTIRENIIYARHN--ASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDXXXXXXXXXXXRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTHDSLLAKNGLYVRLMQPHYG 470
            +F  +I +NI Y  ++   S+ E+  AA+ AN H FI +LP  Y+T VG +G  L+ GQKQRIAIAR +++   +LLLD           +VVQEALD    G +T I+IAHR + +++ D IVV++ G++ E GTH  LLA+ G+Y  ++    G
Sbjct: 1120 LFDCSIAKNIAYGDNSRVVSQDEIVRAAKEANIHPFIETLPQKYETRVGDKGTQLSGGQKQRIAIARALIRQPRVLLLDEATSALDTESEKVVQEALDKAREG-RTCIVIAHRLSTIQNADLIVVIDNGKVKEHGTHQQLLAQKGIYFSMVNIQAG 1274          
The following BLAST results are available for this feature:
BLAST of FC876630 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 378
Match NameE-valueIdentityDescription
MSBA_THIDA1.939e-2948.32Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_METFK1.939e-2946.75Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_NEIG12.532e-2944.59Lipid A export ATP-binding/permease protein msbA O... [more]
ABCB8_XENTR2.532e-2948.67ATP-binding cassette sub-family B member 8, mitoch... [more]
ABCBA_MOUSE3.307e-2947.71ATP-binding cassette sub-family B member 10, mitoc... [more]
Y015_MYCGE4.319e-2942.00Putative ABC transporter ATP-binding protein MG015... [more]
AB28B_ARATH4.319e-2947.02ABC transporter B family member 28 OS=Arabidopsis ... [more]
MSBA_ERWCT7.366e-2943.59Lipid A export ATP-binding/permease protein msbA O... [more]
MDR3_HUMAN7.366e-2947.65Multidrug resistance protein 3 OS=Homo sapiens GN=... [more]
MDR2_RAT7.366e-2948.32Multidrug resistance protein 2 OS=Rattus norvegicu... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN2DE09RM1 EHR Citrus clementina cDNA clone KN0AAN2DE09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876630 ID=FC876630; Name=FC876630; organism=Citrus clementina; type=EST; length=634bp
GCACGAGGATCTTCTCGACAACAATCAGGGAAAATATTATATATGCAAGG
CATAATGCTAGTGAAGCTGAGGTGAAAGAGGCTGCTAGAATAGCTAACGC
TCACCATTTTATCAGCAGCTTGCCTCATGGCTATGACACACATGTGGGAA
TGAGGGGTGTTGACCTGACACCCGGACAAAAACAGAGAATTGCTATTGCC
CGAGTGGTGCTGAAGAATGCACCTATCTTGTTGTTGGATGAAGCTAGCTC
ATCCATTGAGTCCGAGTCAAGTCGAGTAGTACAGGAGGCTCTTGATACAC
TGATAATGGGGAACAAAACAACCATTCTGATTGCTCATAGAGCTGCAATG
ATGAGGCATGTTGATAACATAGTAGTTCTTAATGGAGGACGTATTGTGGA
GGAAGGGACTCATGATTCTTTGCTTGCAAAAAATGGCTTGTATGTTCGGT
TGATGCAACCTCACTATGGGAAGGGTTTACGGCAACATCGATTAGTATAG
GTTGGATTTGTGATTGATTGTAACTTATATGTGATCTATATATATAGTGC
CCATTCAGCTCATTTCAAATTGCTGAAAATCCATACGCCTGCTAATTTTA
TTGATATCTGGTTGGAGTTTCCAGAATGAGATCG
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