FC876687

Overview
NameFC876687
Unique NameFC876687
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length814
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876687 vs. ExPASy Swiss-Prot
Match: VAM7B_DICDI (Vesicle-associated membrane protein 7B OS=Dictyostelium discoideum GN=vamp7B PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 7.253e-31
Identity = 72/214 (33.64%), Postives = 118/214 (55.14%), Query Frame = 2
Query:   74 LIYSFVARGTVILAEYTEFTGNFTSIASQCLQKLPATNNKFTYNCDGHTFNYLVENGFTYCVVAVESAGRQIPIAFLERVKEDFNKRYGGGKAATAVANSLNKEFGSKLKEHMQYCVDHPEEISKLAKVKAQVSEVKGVMMENI-EKVLDRGEKIELLVDKTENLRSQAQDFRQQGTNMRRKMWIQNMKXXXXXXXXXXXXXXXXXXXXCHGFK 712
            +IYS VARG+ +LAE+T   GNF +I  + L  +P  + K +Y  + + F+YLV +  TY  +A E  GR+IP  FL+ VK  F   Y G K  TA+A  +N +F   L+  M +   +   +  +++  A++ EVK +++ +I  ++L RGEKIE+LV++T+ L  Q+  F++Q   ++  MW +N+K                    C GF+
Sbjct:    3 IIYSLVARGSSVLAEFTSTNGNFVTITRRILDLIPPNDTKMSYVYEKYIFHYLVSDTLTYLCMADEEFGRRIPFTFLDDVKNRFKSMY-GDKGKTAIAYGMNSDFSRTLENLMDH-YSNTTRVDTMSRTMAEIDEVKNILVSDIAPQLLKRGEKIEMLVERTDTLNQQSFKFKKQSKQLKCAMWWKNVKLMLVLGAIVLIIIFIIVMSYCDGFR 214          
BLAST of FC876687 vs. ExPASy Swiss-Prot
Match: VAMP7_RAT (Vesicle-associated membrane protein 7 OS=Rattus norvegicus GN=Vamp7 PE=1 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 9.473e-31
Identity = 67/189 (35.45%), Postives = 114/189 (60.32%), Query Frame = 2
Query:   71 SLIYSFVARGTVILAEYTEFTGNFTSIASQCLQKLPATNNKFTYNCDGHTFNYLVENGFTYCVVAVESAGRQIPIAFLERVKEDFNKRYGGGKAATAVANSLNKEFGSKLKEHMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQQGTNMRRKMWIQNMK 637
            +++++ VARGT ILA++    GNF  +  Q L K+P+ NNK TY+   + F+Y+ ++   Y  +  +   R     FL  VK+ F   Y G +A TA+  ++N EF S L   +++  ++ + + ++ + +AQV E+KG+M+ NI+ V  RGE++ELL+DKTENL   +  F+    N+ R M ++N+K
Sbjct:    2 AILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFGFLNEVKKRFQTTY-GSRAQTALPYAMNSEFSSVLAAQLKHHSEN-QSLDRVTETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTENLVDSSVTFKTTSRNLARAMCVKNVK 188          
BLAST of FC876687 vs. ExPASy Swiss-Prot
Match: VAMP7_MOUSE (Vesicle-associated membrane protein 7 OS=Mus musculus GN=Vamp7 PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 9.473e-31
Identity = 68/189 (35.98%), Postives = 115/189 (60.85%), Query Frame = 2
Query:   71 SLIYSFVARGTVILAEYTEFTGNFTSIASQCLQKLPATNNKFTYNCDGHTFNYLVENGFTYCVVAVESAGRQIPIAFLERVKEDFNKRYGGGKAATAVANSLNKEFGSKLKEHMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQQGTNMRRKMWIQNMK 637
            +++++ VARGT ILA++    GNF  +  Q L K+P+ NNK TY+   + F+Y+ ++   Y  +  +   R    +FL  VK+ F   Y G +A TA+  ++N EF S L   +++  ++ + + K+ + +AQV E+KG+M+ NI+ V  RGE++ELL+DKTENL   +  F+    N+ R M ++N+K
Sbjct:    2 AILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFLNEVKKRFQTTY-GSRAQTALPYAMNSEFSSVLAAQLKHHSEN-KSLDKVMETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTENLVDSSVTFKTTSRNLARAMCMKNIK 188          
BLAST of FC876687 vs. ExPASy Swiss-Prot
Match: VAMP7_CHICK (Vesicle-associated membrane protein 7 OS=Gallus gallus GN=VAMP7 PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 9.473e-31
Identity = 71/191 (37.17%), Postives = 113/191 (59.16%), Query Frame = 2
Query:   71 SLIYSFVARGTVILAEYTEFTGNFTSIASQCLQKLPATNNKFTYNCDGHTFNYLVENGFTYCVVAVESAGRQIPIAFLERVKEDFNKRYGGGKAATAVANSLNKEFGSKLKEHMQYCVDHPEE--ISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQQGTNMRRKMWIQNMK 637
            +++++ VARGT ILA++    GNF  +  Q L K+P+ NNK TY+   + F+Y+ ++   Y  +  +   R     FL  +K+ F   Y G +A TA+  ++N EF S L   ++Y   H E     ++A+ +AQV E+KG+M+ NI+ V  RGEK+ELL+DKTENL   +  F+    N+ R M ++N+K
Sbjct:    2 AILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIIYLCITDDDFERSRAFNFLNEIKKRFQTTY-GSRAQTALPYAMNSEFSSVLAAQLKY---HSESKGTDQVAETQAQVDELKGIMVRNIDLVAQRGEKLELLIDKTENLVDSSVTFKTTSRNLARAMCMKNLK 188          
BLAST of FC876687 vs. ExPASy Swiss-Prot
Match: VA712_ARATH (Vesicle-associated membrane protein 712 OS=Arabidopsis thaliana GN=VAMP712 PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.237e-30
Identity = 73/213 (34.27%), Postives = 121/213 (56.81%), Query Frame = 2
Query:   71 SLIYSFVARGTVILAEYTEFTGNFTSIASQCLQKLPATNNKF-TYNCDGHTFNYLVENGFTYCVVAVESAGRQIPIAFLERVKEDFNKRYGGGKAATAVANSLNKEFGSKLKEHMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQQGTNMRRKMWIQNMKXXXXXXXXXXXXXXXXXXXXCHG 706
            S++Y+ VARGTV+LAE +  + N ++IA Q L+K+P   +   +Y+ D + F+    +G T   +A E AGR+IP +FLE + + F + YG     +A A ++N EF   L + ++Y  + P     ++++K ++++V+ VM+ENI+ +LDRGE++ELLVDKT N++     FR+Q       +W +N K                    CHG
Sbjct:    2 SILYALVARGTVVLAELSTTSTNASTIAKQILEKIPGNGDSHVSYSQDRYVFHVKRTDGLTVLCMADEDAGRRIPFSFLEDIHQRFVRTYGRA-IHSAQAYAMNDEFSRVLNQQIEYYSNDPNA-DTISRIKGEMNQVRDVMIENIDNILDRGERLELLVDKTANMQGNTFRFRKQTRRFNNTVWWRNCKLTLLLILVLLVIIYIGVAFACHG 212          
BLAST of FC876687 vs. ExPASy Swiss-Prot
Match: VAMP7_HUMAN (Vesicle-associated membrane protein 7 OS=Homo sapiens GN=VAMP7 PE=1 SV=3)

HSP 1 Score: 132.109 bits (331), Expect = 3.600e-30
Identity = 67/189 (35.45%), Postives = 114/189 (60.32%), Query Frame = 2
Query:   71 SLIYSFVARGTVILAEYTEFTGNFTSIASQCLQKLPATNNKFTYNCDGHTFNYLVENGFTYCVVAVESAGRQIPIAFLERVKEDFNKRYGGGKAATAVANSLNKEFGSKLKEHMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQQGTNMRRKMWIQNMK 637
            +++++ VARGT ILA++    GNF  +  Q L K+P+ NNK TY+   + F+Y+ ++   Y  +  +   R     FL  +K+ F   Y G +A TA+  ++N EF S L   +++  ++ + + K+ + +AQV E+KG+M+ NI+ V  RGE++ELL+DKTENL   +  F+    N+ R M ++N+K
Sbjct:    2 AILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFNFLNEIKKRFQTTY-GSRAQTALPYAMNSEFSSVLAAQLKHHSEN-KGLDKVMETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTENLVDSSVTFKTTSRNLARAMCMKNLK 188          
BLAST of FC876687 vs. ExPASy Swiss-Prot
Match: VAMP7_BOVIN (Vesicle-associated membrane protein 7 OS=Bos taurus GN=VAMP7 PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 3.600e-30
Identity = 67/189 (35.45%), Postives = 114/189 (60.32%), Query Frame = 2
Query:   71 SLIYSFVARGTVILAEYTEFTGNFTSIASQCLQKLPATNNKFTYNCDGHTFNYLVENGFTYCVVAVESAGRQIPIAFLERVKEDFNKRYGGGKAATAVANSLNKEFGSKLKEHMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQQGTNMRRKMWIQNMK 637
            +++++ VARGT ILA++    GNF  +  Q L K+P+ NNK TY+   + F+Y+ ++   Y  +  +   R     FL  +K+ F   Y G +A TA+  ++N EF S L   +++  ++ + + K+ + +AQV E+KG+M+ NI+ V  RGE++ELL+DKTENL   +  F+    N+ R M ++N+K
Sbjct:    2 AILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFNFLNEIKKRFQTTY-GSRAQTALPYAMNSEFSSVLAAQLKHHSEN-KGLDKVMETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTENLVDSSVTFKTTSRNLARAMCMKNLK 188          
BLAST of FC876687 vs. ExPASy Swiss-Prot
Match: VAMP7_PONAB (Vesicle-associated membrane protein 7 OS=Pongo abelii GN=VAMP7 PE=2 SV=3)

HSP 1 Score: 130.954 bits (328), Expect = 8.019e-30
Identity = 67/189 (35.45%), Postives = 113/189 (59.79%), Query Frame = 2
Query:   71 SLIYSFVARGTVILAEYTEFTGNFTSIASQCLQKLPATNNKFTYNCDGHTFNYLVENGFTYCVVAVESAGRQIPIAFLERVKEDFNKRYGGGKAATAVANSLNKEFGSKLKEHMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQQGTNMRRKMWIQNMK 637
            +++++ VARGT ILA++    GNF  +  Q L K+P+ NNK TY    + F+Y+ ++   Y  +  +   R     FL  +K+ F   Y G +A TA+  ++N EF S L   +++  ++ + + K+ + +AQV E+KG+M+ NI+ V  RGE++ELL+DKTENL   +  F+    N+ R M ++N+K
Sbjct:    2 AILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYPHGNYLFHYICQDRIVYLCITDDDFERSRAFNFLNEIKKRFQTTY-GSRAQTALPYAMNSEFSSVLAAQLKHHSEN-KGLDKVMETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTENLVDSSVTFKTTSRNLARAMCMKNLK 188          
BLAST of FC876687 vs. ExPASy Swiss-Prot
Match: VAM7A_DICDI (Vesicle-associated membrane protein 7A OS=Dictyostelium discoideum GN=vamp7A PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.414e-26
Identity = 68/193 (35.23%), Postives = 109/193 (56.48%), Query Frame = 2
Query:   59 MGQQSLIYSFVARGTVILAEYTEFTGNFTSIASQCLQKLPATNNKFTYNCDGHTFNYLVENGFTYCVVAVESAGRQIPIAFLERVKEDFNKRYGGGKAATAVANSLNKEFGSKLKEHMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQQGTNMRRKMWIQNMK 637
            M Q  ++Y+ V+   V L E+    GNF  +A + + K+P T+ K  Y  + H F+Y+ EN   +  +  E  G QIP  FL  +++ F + YG   +  +   + +  F   L+E M+Y   +P+  +K+  V  QVSE KG + + IEK + RGEKIE++VDKTE L+S++  F+     ++RK+W QN K
Sbjct:    1 MSQTDILYACVSYKGVCLVEHKIANGNFIDLARRLITKIPPTSKKI-YTSENHNFHYISENDLAFLCLCHEKLGVQIPSEFLSDIRQQFIRSYGQSFSQNSPTATYDP-FIRVLEERMKY-YSNPKS-NKMNLVMDQVSEAKGALTDAIEKTIHRGEKIEIIVDKTERLQSESFVFKSNSVALKRKLWWQNKK 189          
The following BLAST results are available for this feature:
BLAST of FC876687 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
VAM7B_DICDI7.253e-3133.64Vesicle-associated membrane protein 7B OS=Dictyost... [more]
VAMP7_RAT9.473e-3135.45Vesicle-associated membrane protein 7 OS=Rattus no... [more]
VAMP7_MOUSE9.473e-3135.98Vesicle-associated membrane protein 7 OS=Mus muscu... [more]
VAMP7_CHICK9.473e-3137.17Vesicle-associated membrane protein 7 OS=Gallus ga... [more]
VA712_ARATH1.237e-3034.27Vesicle-associated membrane protein 712 OS=Arabido... [more]
VAMP7_HUMAN3.600e-3035.45Vesicle-associated membrane protein 7 OS=Homo sapi... [more]
VAMP7_BOVIN3.600e-3035.45Vesicle-associated membrane protein 7 OS=Bos tauru... [more]
VAMP7_PONAB8.019e-3035.45Vesicle-associated membrane protein 7 OS=Pongo abe... [more]
VAM7A_DICDI2.414e-2635.23Vesicle-associated membrane protein 7A OS=Dictyost... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN1BD02RM1 EHR Citrus clementina cDNA clone KN0AAN1BD02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876687 ID=FC876687; Name=FC876687; organism=Citrus clementina; type=EST; length=814bp
CAAATCTAGCATTTCTTTAGTTTCCCTCTCTCCGATCCCACGGGTTAGGG
TTTTGAGGATGGGCCAACAGTCGTTGATCTATAGCTTCGTGGCTCGAGGC
ACGGTGATCCTCGCCGAGTACACTGAGTTCACCGGTAATTTCACGAGCAT
CGCATCGCAATGTCTCCAGAAACTTCCCGCTACCAATAACAAGTTCACCT
ACAACTGCGATGGCCACACCTTCAATTACCTCGTTGAGAACGGCTTCACC
TATTGTGTGGTTGCTGTTGAATCTGCTGGCAGGCAAATTCCAATTGCCTT
TCTGGAGCGAGTTAAGGAGGATTTCAACAAGAGATATGGTGGAGGAAAAG
CTGCAACGGCTGTTGCAAATAGCCTGAACAAGGAGTTTGGGTCTAAACTA
AAGGAGCACATGCAGTATTGTGTGGATCATCCTGAAGAGATCAGCAAGCT
TGCCAAAGTCAAAGCTCAGGTCTCTGAAGTCAAGGGGGTTATGATGGAAA
ATATTGAGAAGGTTCTTGATCGTGGTGAGAAGATTGAGCTGCTGGTTGAC
AAAACTGAGAACCTTCGGTCACAGGCACAAGATTTCCGACAACAGGGGAC
GAACATGAGAAGGAAGATGTGGATCCAGAATATGAAGATTAAATTGATCG
TTTTGGGTATCATCATCGCATTGATCCTTATCATCGTTCTGTCACTTTGC
CATGGCTTCAAATGTTGATTTGGTCTTGGAAAGTCCCTGGAAACTGTACT
TTGCTGTCTCGCTGACATGGTCGACTTGGTACATTGGCCACATCTTTTGA
TCCTTGCTTCTCTC
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