FC876696

Overview
NameFC876696
Unique NameFC876696
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length851
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876696 vs. ExPASy Swiss-Prot
Match: RL5_CHICK (60S ribosomal protein L5 OS=Gallus gallus GN=RPL5 PE=2 SV=2)

HSP 1 Score: 265.003 bits (676), Expect = 3.793e-70
Identity = 133/253 (52.57%), Postives = 174/253 (68.77%), Query Frame = 1
Query:   13 ARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTR-RPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDADGLEALYKKVHAAIRADPTMKKSEKPAPKEHKRYNLKKLTYEERKAKLVER 768
            AR RL+ QDKNKYNTPKYR +VR TN+DII QI  A I GD ++ AAYAHELP+YG++VGLTNYAAAYCTGLLLARR+L    +D  YEG VE TG++Y+VE  D +   F   LD GL +TTTGN+VF            IPHS KRF G+  + K+ +AEVHRK+I G +VA YM  LME++ + Y+  F++YIK  I  DG+E +YKK HAAIR +P  +K  K   K+ KR N  K++  ++K ++ ++
Sbjct:   32 ARKRLVIQDKNKYNTPKYRMIVRVTNRDIICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAAAYCTGLLLARRLLNKFGLDKIYEGQVEVTGDEYNVESVDGKPGAFTCYLDAGLARTTTGNKVFGALKGAVDGGLSIPHSTKRFPGYDSESKEFNAEVHRKHIMGQNVADYMRYLMEEDEDAYKKQFSQYIKNNITPDGMEEMYKKAHAAIRDNPVHEKKPKREVKK-KRVNSTKMSLAQKKDRVAQK 283          
BLAST of FC876696 vs. ExPASy Swiss-Prot
Match: RL5_HUMAN (60S ribosomal protein L5 OS=Homo sapiens GN=RPL5 PE=1 SV=3)

HSP 1 Score: 263.848 bits (673), Expect = 8.450e-70
Identity = 132/253 (52.17%), Postives = 174/253 (68.77%), Query Frame = 1
Query:   13 ARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTR-RPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDADGLEALYKKVHAAIRADPTMKKSEKPAPKEHKRYNLKKLTYEERKAKLVER 768
            AR RL+ QDKNKYNTPKYR +VR TN+DII QI  A I GD ++ AAYAHELP+YG++VGLTNYAAAYCTGLLLARR+L    MD  YEG VE TG++Y+VE  D +   F   LD GL +TTTGN+VF            IPHS KRF G+  + K+ +AEVHRK+I G +VA YM  LME++ + Y+  F++YIK  +  D +E +YKK HAAIR +P  +K  K   K+ KR+N  K++  ++K ++ ++
Sbjct:   32 ARKRLVIQDKNKYNTPKYRMIVRVTNRDIICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMDKIYEGQVEVTGDEYNVESIDGQPGAFTCYLDAGLARTTTGNKVFGALKGAVDGGLSIPHSTKRFPGYDSESKEFNAEVHRKHIMGQNVADYMRYLMEEDEDAYKKQFSQYIKNSVTPDMMEEMYKKAHAAIRENPVYEKKPKKEVKK-KRWNRPKMSLAQKKDRVAQK 283          
BLAST of FC876696 vs. ExPASy Swiss-Prot
Match: RL5_MACFA (60S ribosomal protein L5 OS=Macaca fascicularis GN=RPL5 PE=2 SV=3)

HSP 1 Score: 262.307 bits (669), Expect = 2.458e-69
Identity = 131/253 (51.78%), Postives = 174/253 (68.77%), Query Frame = 1
Query:   13 ARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTR-RPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDADGLEALYKKVHAAIRADPTMKKSEKPAPKEHKRYNLKKLTYEERKAKLVER 768
            AR RL+ QDKNKYNTPKYR +VR TN+DII QI  A I GD ++ AAYAH+LP+YG++VGLTNYAAAYCTGLLLARR+L    MD  YEG VE TG++Y+VE  D +   F   LD GL +TTTGN+VF            IPHS KRF G+  + K+ +AEVHRK+I G +VA YM  LME++ + Y+  F++YIK  +  D +E +YKK HAAIR +P  +K  K   K+ KR+N  K++  ++K ++ ++
Sbjct:   32 ARKRLVIQDKNKYNTPKYRMIVRVTNRDIICQIAYARIEGDMIVCAAYAHKLPKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMDKIYEGQVEVTGDEYNVESIDGQPGAFTCYLDAGLARTTTGNKVFGALKGAVDGGLSIPHSTKRFPGYDSESKEFNAEVHRKHIMGQNVADYMRYLMEEDEDAYKKQFSQYIKNSVTPDMMEEMYKKAHAAIRENPVYEKKPKKEVKK-KRWNRPKMSLAQKKDRVAQK 283          
BLAST of FC876696 vs. ExPASy Swiss-Prot
Match: RL5_BOVIN (60S ribosomal protein L5 OS=Bos taurus GN=RPL5 PE=2 SV=3)

HSP 1 Score: 261.922 bits (668), Expect = 3.211e-69
Identity = 131/253 (51.78%), Postives = 173/253 (68.38%), Query Frame = 1
Query:   13 ARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTR-RPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDADGLEALYKKVHAAIRADPTMKKSEKPAPKEHKRYNLKKLTYEERKAKLVER 768
            AR RL+ QDKNKYNTPKYR +VR TN+DII QI  A I GD ++ AAYAHELP+YG++VGLTNYAAAYCTGLLLARR+L    MD  YEG VE TG++Y+VE  D +   F   LD GL +TTTGN+VF            IPHS KRF G+  + K+  AEVHRK+I G +VA YM  L+E++ + Y+  F++YIK  +  D +E +YKK HAAIR +P  +K  K   K+ KR+N  K++  ++K ++ ++
Sbjct:   32 ARKRLVIQDKNKYNTPKYRMIVRVTNRDIICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMDKIYEGQVEVTGDEYNVESIDGQPGAFTCYLDAGLARTTTGNKVFGALKGAVDGGLSIPHSTKRFPGYDSESKEFSAEVHRKHIMGQNVADYMRYLIEEDEDAYKKQFSQYIKNNVTPDMMEEMYKKAHAAIRENPVYEKKPKKEVKK-KRWNRPKMSLAQKKDRVAQK 283          
BLAST of FC876696 vs. ExPASy Swiss-Prot
Match: RL5_RAT (60S ribosomal protein L5 OS=Rattus norvegicus GN=Rpl5 PE=1 SV=3)

HSP 1 Score: 261.536 bits (667), Expect = 4.194e-69
Identity = 131/253 (51.78%), Postives = 173/253 (68.38%), Query Frame = 1
Query:   13 ARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTR-RPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDADGLEALYKKVHAAIRADPTMKKSEKPAPKEHKRYNLKKLTYEERKAKLVER 768
            AR RL+ QDKNKYNTPKYR +VR TN+DII QI  A I GD ++ AAYAHELP+YG++VGLTNYAAAYCTGLLLARR+L    MD  YEG VE  G++Y+VE  D +   F   LD GL +TTTGN+VF            IPHS KRF G+  + K+ +AEVHRK+I G +VA YM  LME++ + Y+  F++YIK  +  D +E +YKK HAAIR +P  +K  K   K+ KR+N  K++  ++K ++ ++
Sbjct:   32 ARKRLVIQDKNKYNTPKYRMIVRVTNRDIICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMDKIYEGQVEVNGDEYNVESIDGQPGAFTCYLDAGLARTTTGNKVFGALKGAVDGGLSIPHSTKRFPGYDSESKEFNAEVHRKHIMGQNVADYMRYLMEEDEDAYKKQFSQYIKNNVTPDMMEEMYKKAHAAIRENPVYEKKPKREVKK-KRWNRPKMSLAQKKDRVAQK 283          
BLAST of FC876696 vs. ExPASy Swiss-Prot
Match: RL5_MOUSE (60S ribosomal protein L5 OS=Mus musculus GN=Rpl5 PE=1 SV=3)

HSP 1 Score: 259.996 bits (663), Expect = 1.220e-68
Identity = 131/253 (51.78%), Postives = 172/253 (67.98%), Query Frame = 1
Query:   13 ARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTR-RPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDADGLEALYKKVHAAIRADPTMKKSEKPAPKEHKRYNLKKLTYEERKAKLVER 768
            AR RL+ QDKNKYNTPKYR +VR TN+DII QI  A I GD ++ AAYAHELP+YG++VGLTNYAAAYCTGLLLARR+L    MD  YEG VE  G +Y+VE  D +   F   LD GL +TTTGN+VF            IPHS KRF G+  + K+ +AEVHRK+I G +VA YM  LME++ + Y+  F++YIK  +  D +E +YKK HAAIR +P  +K  K   K+ KR+N  K++  ++K ++ ++
Sbjct:   32 ARKRLVIQDKNKYNTPKYRMIVRVTNRDIICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMDKIYEGQVEVNGGEYNVESIDGQPGAFTCYLDAGLARTTTGNKVFGALKGAVDGGLSIPHSTKRFPGYDSESKEFNAEVHRKHIMGQNVADYMRYLMEEDEDAYKKQFSQYIKNNVTPDMMEEMYKKAHAAIRENPVYEKKPKREVKK-KRWNRPKMSLAQKKDRVAQK 283          
BLAST of FC876696 vs. ExPASy Swiss-Prot
Match: RL5_OIKDI (60S ribosomal protein L5 OS=Oikopleura dioica GN=RPL5 PE=3 SV=1)

HSP 1 Score: 253.062 bits (645), Expect = 1.492e-66
Identity = 133/253 (52.57%), Postives = 172/253 (67.98%), Query Frame = 1
Query:   13 ARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGED-YSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDADGLEALYKKVHAAIRADPTMK-KSEKPAPKEHKRYNLKKLTYEERKAKLVE 765
            AR RL  QDKNKYNTPKYR VVR TNKDIIAQI  A + GD ++ +AYAHELPRYG+ VGLTNY+AAY TGLL+ RRVL+   +D  YEG +E  G++ Y    A  +  FR  LD GL +T+TG R+F            IPHS KRF GF+ DGK L+AE H+ +I+GGHV  YM  L E+  E Y+  F+ +IK GI+++ +E +YKK HAAIRADP+ K K EK   K  KR+N  K++Y +R+A++ +
Sbjct:   42 ARKRLCVQDKNKYNTPKYRLVVRVTNKDIIAQIAYARLQGDVIVTSAYAHELPRYGVSVGLTNYSAAYATGLLIGRRVLQKFGLDSMYEGQIEVDGDEFYEEADAAEKASFRCYLDTGLARTSTGARIFGVLKGCADAGIDIPHSPKRFPGFA-DGK-LNAEAHKDHIFGGHVGDYMEKLEEENEEAYKRQFSRFIKNGINSENIEEMYKKAHAAIRADPSPKAKVEKTVDK--KRWNRAKISYAQRRARVAQ 290          
BLAST of FC876696 vs. ExPASy Swiss-Prot
Match: RL5_YEAST (60S ribosomal protein L5 OS=Saccharomyces cerevisiae GN=RPL5 PE=1 SV=3)

HSP 1 Score: 251.906 bits (642), Expect = 3.323e-66
Identity = 133/262 (50.76%), Postives = 171/262 (65.27%), Query Frame = 1
Query:   16 RIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPA--DTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDADGLEALYKKVHAAIRADPTMKKSEKPAPKEH-----KRYNLKKLTYEERKAKLVERLNAL 780
            R RL+ Q K KYNTPKYR VVRFTNKDII QI+S+ I GD VLAAAY+HELPRYG+  GLTN+AAAY TGLL+ARR L+ L +D+ Y+G  E  GE Y +  A  D  RPF+  LD+GL +TTTG RVF            +PHS+ RF G+  + +++D E+ R YI+GGHV+ YM  L +D+ E++   F  Y+   IDAD LE +Y   H AIRADP  K +EK   KE      K+Y   KL+ EER A++  ++ AL
Sbjct:   33 RKRLVTQHKAKYNTPKYRLVVRFTNKDIICQIISSTITGDVVLAAAYSHELPRYGITHGLTNWAAAYATGLLIARRTLQRLGLDETYKGVEEVEGE-YELTEAVEDGPRPFKVFLDIGLQRTTTGARVFGALKGASDGGLYVPHSENRFPGWDFETEEIDPELLRSYIFGGHVSQYMEELADDDEERFSELFKGYLADDIDADSLEDIYTSAHEAIRADPAFKPTEKKFTKEQYAAESKKYRQTKLSKEERAARVAAKIAAL 293          
BLAST of FC876696 vs. ExPASy Swiss-Prot
Match: RL5_ANOGA (60S ribosomal protein L5 OS=Anopheles gambiae GN=RpL5 PE=2 SV=3)

HSP 1 Score: 248.825 bits (634), Expect = 2.813e-65
Identity = 124/236 (52.54%), Postives = 161/236 (68.22%), Query Frame = 1
Query:   13 ARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADT-RRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDADGLEALYKKVHAAIRADPTMKKSEKPAPKEHKRY 717
            AR RLI QDKNKYNTPK+R +VR +N+DI  QI  A I GD ++ AAY+HELPRYG++VGLTNYAAAYCTGLL+ARR+L+ L +D  Y G  + TGE+Y VEP D     FR  LDVGL +TTTG RVF            IPHS KRF G+S + K  +AE+HR +I+G HVA YM TL E++ E ++  F++YI  GI AD +E +YK  HA+IR  P+ +   + +P+   R+
Sbjct:   32 ARKRLIFQDKNKYNTPKFRLIVRLSNRDITCQIAYARIEGDRIVCAAYSHELPRYGVKVGLTNYAAAYCTGLLVARRILQKLRLDTLYAGCTDVTGEEYLVEPVDEGPAAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNIPHSVKRFPGYSAENKSFNAEMHRDHIFGLHVANYMRTLEEEDEEAFKRQFSKYISLGIKADDIENIYKNAHASIRIPPSRRNPRRRSPRSGGRW 267          
BLAST of FC876696 vs. ExPASy Swiss-Prot
Match: RL5_THEPA (60S ribosomal protein L5 OS=Theileria parva GN=RPL5 PE=3 SV=1)

HSP 1 Score: 243.432 bits (620), Expect = 1.182e-63
Identity = 130/245 (53.06%), Postives = 164/245 (66.94%), Query Frame = 1
Query:   13 ARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADT-RRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGK---QLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDADGLEALYKKVHAAIRADPTMKKSEKPAPKEHKRYNLKKLT 735
            AR RL+ QDKNKY++PKYR VVR TNK +I QIVS+ +VGD V A+A + EL  YG++VGLTNYAAAYCTGLLLARR+L  L++D ++ G VEA GE Y VE  D  RRPF+ALLDVG+   TTGNRVF            +PHS+KRF G+S D +     DA+ HR  I+G HVA YM  L E++PEKY+  F+ Y+K G+D++ LE +Y K H  IR +P +    K   K H R   K LT
Sbjct:   32 ARRRLVAQDKNKYDSPKYRLVVRLTNKRVICQIVSSTLVGDKVHASADSSELVHYGVKVGLTNYAAAYCTGLLLARRLLTKLKLDSQFVGKVEADGELYHVEEEDNERRPFKALLDVGIKNVTTGNRVFGALKGACDGGLHVPHSEKRFPGYSVDDENNGSYDAQAHRDRIFGTHVANYMEYLKEEDPEKYKRQFSAYLKLGLDSESLEDMYAKAHENIRKNPVLPTKPKRKLK-HVREGSKVLT 275          
The following BLAST results are available for this feature:
BLAST of FC876696 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
RL5_CHICK3.793e-7052.5760S ribosomal protein L5 OS=Gallus gallus GN=RPL5 ... [more]
RL5_HUMAN8.450e-7052.1760S ribosomal protein L5 OS=Homo sapiens GN=RPL5 P... [more]
RL5_MACFA2.458e-6951.7860S ribosomal protein L5 OS=Macaca fascicularis GN... [more]
RL5_BOVIN3.211e-6951.7860S ribosomal protein L5 OS=Bos taurus GN=RPL5 PE=... [more]
RL5_RAT4.194e-6951.7860S ribosomal protein L5 OS=Rattus norvegicus GN=R... [more]
RL5_MOUSE1.220e-6851.7860S ribosomal protein L5 OS=Mus musculus GN=Rpl5 P... [more]
RL5_OIKDI1.492e-6652.5760S ribosomal protein L5 OS=Oikopleura dioica GN=R... [more]
RL5_YEAST3.323e-6650.7660S ribosomal protein L5 OS=Saccharomyces cerevisi... [more]
RL5_ANOGA2.813e-6552.5460S ribosomal protein L5 OS=Anopheles gambiae GN=R... [more]
RL5_THEPA1.182e-6353.0660S ribosomal protein L5 OS=Theileria parva GN=RPL... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN3AA09RM1 EHR Citrus clementina cDNA clone KN0AAN3AA09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876696 ID=FC876696; Name=FC876696; organism=Citrus clementina; type=EST; length=851bp
GCACGAGGCAGAGCTAGAATTCGCTTGATTAATCAGGACAAGAATAAGTA
CAACACACCCAAATACCGATTTGTTGTCCGATTCACAAACAAGGACATCA
TTGCACAGATAGTGTCAGCCAACATTGTTGGTGATTCTGTCCTTGCTGCT
GCTTATGCCCATGAGCTTCCTCGTTATGGACTTGAAGTAGGTCTTACAAA
CTATGCTGCAGCTTATTGCACTGGGCTTCTTTTGGCTCGTCGTGTCTTGA
AGATGCTTGAAATGGATGATGAGTATGAGGGCAATGTTGAGGCTACCGGA
GAGGATTACTCTGTCGAACCAGCTGATACAAGGAGGCCATTCCGTGCTCT
CCTTGATGTTGGGCTCATCAAAACAACAACTGGAAACCGTGTCTTTGGTG
CTCTGAAGGGAGCATTAGATGGTGGATTGGACATTCCTCATAGTGACAAG
AGGTTTGCTGGTTTTTCGAAGGATGGCAAGCAGCTGGATGCTGAGGTTCA
CCGCAAGTATATCTATGGTGGACATGTTGCTGCTTACATGAGTACATTGA
TGGAGGATGAGCCAGAGAAGTATCAATCTCACTTCACCGAGTACATCAAG
AAAGGAATTGATGCTGATGGCTTGGAGGCACTGTACAAGAAGGTTCATGC
TGCCATTCGTGCAGATCCTACAATGAAGAAATCTGAGAAGCCAGCTCCCA
AAGAACATAAGAGGTATAATTTGAAGAAGCTTACTTACGAGGAAAGGAAG
GCGAAGCTGGTTGAAAGGCTGAATGCCCTAAACTCGGCAGTTGATGAGGA
GGACGAATGAAAGCATCATAACTAGATATGAATTCAAAATATGTGGCAAA
T
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