FC876773

Overview
NameFC876773
Unique NameFC876773
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length671
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876773 vs. ExPASy Swiss-Prot
Match: CCNT1_MOUSE (Cyclin-T1 OS=Mus musculus GN=Ccnt1 PE=1 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 8.272e-13
Identity = 36/71 (50.70%), Postives = 50/71 (70.42%), Query Frame = 3
Query:  246 RWYFSRKELEEDSPSRRDGIDLKRETYLRKSYCTFLQDLGMKLKVPQITIATAIIFCHRFYLRQSHTKNDR 458
            RWYF+R++LE +SPSRR G+D  +E   R+     LQD+G +L V Q+TI TAI++ HRFY+ QS T+  R
Sbjct:   11 RWYFTREQLE-NSPSRRFGVDSDKELSYRQQAANLLQDVGQRLNVSQLTINTAIVYMHRFYMIQSFTQFHR 80          
BLAST of FC876773 vs. ExPASy Swiss-Prot
Match: CCNT1_HUMAN (Cyclin-T1 OS=Homo sapiens GN=CCNT1 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.080e-12
Identity = 35/68 (51.47%), Postives = 49/68 (72.06%), Query Frame = 3
Query:  246 RWYFSRKELEEDSPSRRDGIDLKRETYLRKSYCTFLQDLGMKLKVPQITIATAIIFCHRFYLRQSHTK 449
            RWYF+R++LE +SPSRR G+D  +E   R+     LQD+G +L V Q+TI TAI++ HRFY+ QS T+
Sbjct:   11 RWYFTREQLE-NSPSRRFGVDPDKELSYRQQAANLLQDMGQRLNVSQLTINTAIVYMHRFYMIQSFTQ 77          
BLAST of FC876773 vs. ExPASy Swiss-Prot
Match: CCNT1_HORSE (Cyclin-T1 OS=Equus caballus GN=CCNT1 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.080e-12
Identity = 36/71 (50.70%), Postives = 50/71 (70.42%), Query Frame = 3
Query:  246 RWYFSRKELEEDSPSRRDGIDLKRETYLRKSYCTFLQDLGMKLKVPQITIATAIIFCHRFYLRQSHTKNDR 458
            RWYF+R++LE +SPSRR G+D  +E   R+     LQD+G +L V Q+TI TAI++ HRFY+ QS T+  R
Sbjct:   11 RWYFTREQLE-NSPSRRFGLDPDKELSYRQQAANLLQDMGQRLNVSQLTINTAIVYMHRFYMIQSFTQFHR 80          
BLAST of FC876773 vs. ExPASy Swiss-Prot
Match: CCNT1_BOVIN (Cyclin-T1 OS=Bos taurus GN=CCNT1 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.843e-12
Identity = 36/71 (50.70%), Postives = 50/71 (70.42%), Query Frame = 3
Query:  246 RWYFSRKELEEDSPSRRDGIDLKRETYLRKSYCTFLQDLGMKLKVPQITIATAIIFCHRFYLRQSHTKNDR 458
            RWYF+R++LE +SPSRR G+D  +E   R+     LQD+G +L V Q+TI TAI++ HRFY+ QS T+  R
Sbjct:   11 RWYFTREQLE-NSPSRRFGLDPDKELSNRQQAANLLQDMGQRLNVSQLTINTAIVYMHRFYMIQSFTQFHR 80          
BLAST of FC876773 vs. ExPASy Swiss-Prot
Match: CCNT2_HUMAN (Cyclin-T2 OS=Homo sapiens GN=CCNT2 PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.560e-11
Identity = 30/73 (41.10%), Postives = 51/73 (69.86%), Query Frame = 3
Query:  246 RWYFSRKELEEDSPSRRDGIDLKRETYLRKSYCTFLQDLGMKLKVPQITIATAIIFCHRFYLRQSHTKNDRRV 464
            RW+F+R++LE ++PSRR G++  +E   R+     +Q++G +L V Q+TI TAI++ HRFY+  S TK ++ +
Sbjct:   10 RWFFTREQLE-NTPSRRCGVEADKELSCRQQAANLIQEMGQRLNVSQLTINTAIVYMHRFYMHHSFTKFNKNI 81          
The following BLAST results are available for this feature:
BLAST of FC876773 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
CCNT1_MOUSE8.272e-1350.70Cyclin-T1 OS=Mus musculus GN=Ccnt1 PE=1 SV=2[more]
CCNT1_HUMAN1.080e-1251.47Cyclin-T1 OS=Homo sapiens GN=CCNT1 PE=1 SV=1[more]
CCNT1_HORSE1.080e-1250.70Cyclin-T1 OS=Equus caballus GN=CCNT1 PE=1 SV=1[more]
CCNT1_BOVIN1.843e-1250.70Cyclin-T1 OS=Bos taurus GN=CCNT1 PE=1 SV=1[more]
CCNT2_HUMAN1.560e-1141.10Cyclin-T2 OS=Homo sapiens GN=CCNT2 PE=1 SV=2[more]

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Properties
Property NameValue
Genbank descriptionKN0AAN3AF05RM1 EHR Citrus clementina cDNA clone KN0AAN3AF05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876773 ID=FC876773; Name=FC876773; organism=Citrus clementina; type=EST; length=671bp
GCACGAGGCTTTTGCAGGTTCAATTGCTTTAAATTATTGGAATATTGAGT
CGCTCTGCTAATTTTTTAAGGAAGGCGATGCTGTCTGTCTGTCTGTCAGC
CAGATAGACCATTGATATTAGTATTTGACGGAGCTGGTTGGCCAGAATGC
AAATGGCTAACTTGCTGCCTGGCGATTCCTCACATCATGGAATTTATAAA
GGTGAGCCGTCTGAGTTTTCTCAGGATATGCCAAAGGATGGTGGCCGTTG
GTATTTCTCTAGAAAAGAACTTGAGGAAGATTCCCCATCTAGACGAGATG
GCATTGACTTGAAAAGGGAGACTTATCTACGCAAGTCATACTGTACATTT
CTGCAAGACTTGGGCATGAAACTTAAAGTACCCCAGATAACAATTGCTAC
GGCAATAATATTCTGTCACCGGTTCTACCTTCGTCAATCGCATACAAAGA
ATGATAGGAGGGTGAGTTATGCTTATCCACAACATTTTGAGTATTTATCT
TTTCTTCTGGAGAAATATATTGTTATCACCTGGCAGCATTTATGGTTGAA
TATTTAATGTAATCTGTTAAAAAAATTTCTGATCACATCTGTAGTGTTAT
TAGTAGCATCATGTAATGTAATTTCAGATCCTGATATGATCTAGAATAAA
GACGCCAGAGCTGTTTTTGGT
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