FC876791

Overview
NameFC876791
Unique NameFC876791
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length580
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876791 vs. ExPASy Swiss-Prot
Match: CATW_MOUSE (Cathepsin W OS=Mus musculus GN=Ctsw PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 6.875e-12
Identity = 47/160 (29.38%), Postives = 76/160 (47.50%), Query Frame = 2
Query:   23 IIKNQGIATEADYPYK--EVQGTCEDAQVKVAAKISNFEDVKPNDEQALLQAVAMQ-PVSICIEGSGPDFQSYKGGIFNRGCGT----QCSHAVAIVGFGATEDGMK----------------YWLIKNSWGEKWGEAGYMRILKDVDAPEGLCGIATKP 433
            ++ N G+A+E DYP++       C   + K  A I +F  +  N+EQA+   +A+  P+++ I       Q Y+ G+      +    Q  H+V +VGFG  ++GM+                YW++KNSWG  WGE GY R+ +        CG+   P
Sbjct:  201 VLNNSGLASEKDYPFQGDRKPHRCLAKKYKKVAWIQDFTMLS-NNEQAIAHYLAVHGPITVTINMKL--LQHYQKGVIKATPSSCDPRQVDHSVLLVGFGKKKEGMQTGTVLSHSRKRRHSSPYWILKNSWGAHWGEKGYFRLYRG----NNTCGVTKYP 353          
BLAST of FC876791 vs. ExPASy Swiss-Prot
Match: CATV_GVCP (Viral cathepsin OS=Cydia pomonella granulosis virus GN=VCATH PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 6.875e-12
Identity = 42/134 (31.34%), Postives = 72/134 (53.73%), Query Frame = 2
Query:   23 IIKNQGIATEADYPYKEVQGTCEDAQVKVAAKISNFEDVKPNDEQALLQAVAMQPVSICIEGSGPDFQSYKGGIFNRGCGTQ-CSHAVAIVGFGATEDGMKYWLIKNSWGEKWGEAGYMRILKDVDAPEGLCGI 421
            I++  G+ +  + PY    G C+ +  +++   S    V  N+ +     V   P+S+ I+ S  D  +YK GI +     +  +HAV +VG+G   D + YW++KNSWG +WGE GY R+ +D ++    CG+
Sbjct:  198 ILQEGGVVSAENEPYYGFDGVCKKSPFELSISGSR-RYVLQNENKLRELLVVNGPISVAIDVS--DLINYKAGIADICENNEGLNHAVLLVGYGVKND-VPYWILKNSWGAEWGEEGYFRVQRDKNS----CGM 323          
BLAST of FC876791 vs. ExPASy Swiss-Prot
Match: CATF_MOUSE (Cathepsin F OS=Mus musculus GN=Ctsf PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.532e-11
Identity = 48/145 (33.10%), Postives = 66/145 (45.52%), Query Frame = 2
Query:   26 IKNQG-IATEADYPYKEVQGTCEDAQVKVAAKISNFEDVKPNDEQALLQAVAMQPVSICIEGSGPDFQSYKGGI---FNRGCGTQ-CSHAVAIVGFGATEDGMKYWLIKNSWGEKWGEAGYMRILKDVDAPEGLCGIATKPSYPV 445
            IKN G + TE DY Y+    TC  +       I++  ++  N+ +         P+S+ I   G  F  Y+ GI   F   C      HAV +VG+G     + YW IKNSWG  WGE GY  + +      G CG+ T  S  V
Sbjct:  323 IKNLGGLETEDDYGYQGHVQTCNFSAQMAKVYINDSVELSRNENKIAAWLAQKGPISVAINAFGMQF--YRHGIAHPFRPLCSPWFIDHAVLLVGYG-NRSNIPYWAIKNSWGSDWGEEGYYYLYRG----SGACGVNTMASSAV 460          
BLAST of FC876791 vs. ExPASy Swiss-Prot
Match: CYSP4_DICDI (Cysteine proteinase 4 OS=Dictyostelium discoideum GN=cprD PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 2.000e-11
Identity = 38/100 (38.00%), Postives = 56/100 (56.00%), Query Frame = 2
Query:   14 FKYIIKNQGIATEADYPYKEVQGT-CEDAQVKVAAKISNFEDVKPNDEQALLQAVAMQPVSICIEGSGPDFQSYKGGI-FNRGCG-TQCSHAVAIVGFGA 304
            F+YII N+GI TE+ YPY    G  C+     + A+I ++++V    E +L  A    PVS+ I+ S   FQ Y+ GI +   C  TQ  H V +VG+G+
Sbjct:  187 FEYIINNKGIDTESSYPYTAEDGKECKFKTSNIGAQIVSYQNVTSGSEASLQSASNNAPVSVAIDASNESFQLYESGIYYEPACSPTQLDHGVLVVGYGS 286          
BLAST of FC876791 vs. ExPASy Swiss-Prot
Match: CATB3_GIALA (Cathepsin B-like CP3 OS=Giardia lamblia GN=CP3 PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 2.000e-11
Identity = 31/69 (44.93%), Postives = 43/69 (62.32%), Query Frame = 2
Query:  218 DFQSYKGGIFNRGCG-TQCSHAVAIVGFGATEDGMKYWLIKNSWGEKWGEAGYMRILKDVDAPEGLCGI 421
            DF  Y+ G++    G  +  HAV +VG+G  +DG+ YW+IKNSWG  WGE GY RI++  +     CGI
Sbjct:  224 DFMYYESGVYQHTYGRVEGGHAVDMVGYGTDDDGVDYWIIKNSWGPDWGEDGYFRIIRMTNE----CGI 288          
BLAST of FC876791 vs. ExPASy Swiss-Prot
Match: CATB1_GIALA (Cathepsin B-like CP1 OS=Giardia lamblia GN=CP1 PE=2 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 2.612e-11
Identity = 30/62 (48.39%), Postives = 40/62 (64.52%), Query Frame = 2
Query:  218 DFQSYKGGIFNRGCGT--QCSHAVAIVGFGATEDGMKYWLIKNSWGEKWGEAGYMRILKDVD 397
            D   Y+ G++    GT     HA+ IVG+G T+DG  YW+IKNSWG  WGE GY RI++ V+
Sbjct:  228 DLSYYESGVYKHTYGTINLGFHALEIVGYGTTDDGTDYWIIKNSWGPDWGENGYFRIVRGVN 289          
BLAST of FC876791 vs. ExPASy Swiss-Prot
Match: CATO_MOUSE (Cathepsin O OS=Mus musculus GN=Ctso PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.412e-11
Identity = 38/132 (28.79%), Postives = 65/132 (49.24%), Query Frame = 2
Query:   41 IATEADYPYKEVQGTCE---DAQVKVAAKISNFEDVKPNDEQALLQAVAMQPVSICIEGSGPDFQSYKGGIFNRGCGT-QCSHAVAIVGFGATEDGMKYWLIKNSWGEKWGEAGYMRILKDVDAPEGLCGIA 424
            +  ++ YP+K V G C     +Q  V+ K  +  + +  +++     ++  P+ + ++     +Q Y GGI    C + + +HAV I GF  T +   YW+++NSWG  WG  GY      V     +CGIA
Sbjct:  180 LVADSQYPFKAVNGQCRHFPQSQAGVSVKDFSAYNFRGQEDEMARALLSFGPLVVIVDAMS--WQDYLGGIIQHHCSSGEANHAVLITGFDRTGN-TPYWMVRNSWGSSWGVEGYAH----VKMGGNVCGIA 304          
BLAST of FC876791 vs. ExPASy Swiss-Prot
Match: CATL_SCHMA (Cathepsin L OS=Schistosoma mansoni GN=CL1 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.456e-11
Identity = 46/146 (31.51%), Postives = 70/146 (47.95%), Query Frame = 2
Query:    5 ARGFKYIIKNQGIATEADYPYKEVQGTCEDAQVKVAAKISNFEDVKPNDEQALLQAVAMQPVSICIEGSGPDFQSYKGGIFNRGCGTQCS-----HAVAIVGFGATEDGMKYWLIKNSWGEKWGEAGYMRILKDVDAPEGLCGIAT 427
            +  ++ IIK  G+  E +YPY      C      VA  I++   V    ++  L A      +I +  +    Q Y+ GI +      CS     HAV +VG+G +E    +W++KNSWG +WGE GY R+ +     +G CGI T
Sbjct:  173 SNAYESIIKMGGLMLEDNYPYDAKNEKCHLKTDGVAVYINS--SVNLTQDETELAAWLYHNSTISVGMNALLLQFYQHGI-SHPWWIFCSKYLLDHAVLLVGYGVSEKNEPFWIVKNSWGVEWGENGYFRMYRG----DGSCGINT 311          
The following BLAST results are available for this feature:
BLAST of FC876791 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 148
Match NameE-valueIdentityDescription
CATW_MOUSE6.875e-1229.38Cathepsin W OS=Mus musculus GN=Ctsw PE=2 SV=1[more]
CATV_GVCP6.875e-1231.34Viral cathepsin OS=Cydia pomonella granulosis viru... [more]
CATF_MOUSE1.532e-1133.10Cathepsin F OS=Mus musculus GN=Ctsf PE=2 SV=1[more]
CYSP4_DICDI2.000e-1138.00Cysteine proteinase 4 OS=Dictyostelium discoideum ... [more]
CATB3_GIALA2.000e-1144.93Cathepsin B-like CP3 OS=Giardia lamblia GN=CP3 PE=... [more]
CATB1_GIALA2.612e-1148.39Cathepsin B-like CP1 OS=Giardia lamblia GN=CP1 PE=... [more]
CATO_MOUSE3.412e-1128.79Cathepsin O OS=Mus musculus GN=Ctso PE=2 SV=1[more]
CATL_SCHMA4.456e-1131.51Cathepsin L OS=Schistosoma mansoni GN=CL1 PE=2 SV=... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN3AG12RM1 EHR Citrus clementina cDNA clone KN0AAN3AG12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876791 ID=FC876791; Name=FC876791; organism=Citrus clementina; type=EST; length=580bp
TTCGGCACGAGGCTTTAAATATATTATAAAAAACCAGGGTATTGCCACAG
AAGCGGATTATCCATACAAGGAAGTCCAAGGAACTTGTGAAGACGCACAG
GTCAAGGTAGCTGCTAAAATTAGTAACTTTGAAGATGTAAAACCCAATGA
TGAGCAGGCTTTACTCCAAGCTGTAGCCATGCAGCCAGTATCAATTTGCA
TTGAAGGAAGTGGACCAGACTTCCAGAGCTACAAAGGCGGTATTTTTAAC
CGAGGATGTGGAACTCAGTGTTCTCATGCTGTTGCTATCGTTGGATTTGG
GGCAACTGAAGATGGAATGAAGTATTGGTTAATTAAGAATTCATGGGGGG
AGAAATGGGGTGAGGCCGGCTACATGAGGATTCTCAAAGATGTTGATGCA
CCTGAAGGTCTTTGTGGCATTGCCACTAAACCTTCCTACCCAGTTGCATG
AGTAGCAGTATTTTATATTATATTATTATTAGCCGCCTCTTAATAATGAT
GTCTTCAAGCCTACACATGCATTAACCTCGACAGGCTTATACGAACCTTA
TGATTCGTATGATTCTTTGGTTTTATCTAT
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