FC876797

Overview
NameFC876797
Unique NameFC876797
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length688
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876797 vs. ExPASy Swiss-Prot
Match: PIN4_ASPFU (Peptidyl-prolyl cis-trans isomerase pin4 OS=Aspergillus fumigatus GN=pin4 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.329e-12
Identity = 42/109 (38.53%), Postives = 58/109 (53.21%), Query Frame = 1
Query:  205 LGTCTYVKARHILCEKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGKKGGDLGWFPRGKMAGPFQEVSFNTPVGVTSAP----FKSTHGYHIILCEGRK 519
            L   T +  RHILCEK  K  EA +KL++G          A+F  +A EYSE    ++GG LGW  RG +   F++ ++      T+ P     K+  GYHII+ EGRK
Sbjct:   32 LKPATSINVRHILCEKFSKKEEALEKLRNG----------AKFDDVAREYSE-DKARQGGSLGWKVRGSLNADFEKAAYELEPSTTANPKYVEVKTGFGYHIIMVEGRK 129          
BLAST of FC876797 vs. ExPASy Swiss-Prot
Match: PRSA_GEOKA (Foldase protein prsA OS=Geobacillus kaustophilus GN=prsA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.385e-12
Identity = 39/94 (41.49%), Postives = 51/94 (54.26%), Query Frame = 1
Query:  223 VKARHILCEKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECP-SGKKGGDLGWFPRGKMAGPFQEVSFNTPVGVTSAPFKSTHGYHII 501
            ++A HIL + +    E   KL  G           +FSK+A EYS+ P S   GGDLGWF  GKM   F+E ++   VG  S P K+ +GYHII
Sbjct:  136 IRASHILVKDEKTAKEVKAKLDKG----------EDFSKLAKEYSQDPGSASNGGDLGWFGPGKMVKEFEEAAYKLKVGEVSDPVKTDYGYHII 219          
BLAST of FC876797 vs. ExPASy Swiss-Prot
Match: PRSA_OCEIH (Foldase protein prsA OS=Oceanobacillus iheyensis GN=prsA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.149e-11
Identity = 37/96 (38.54%), Postives = 55/96 (57.29%), Query Frame = 1
Query:  217 TYVKARHILCEKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYS-ECPSGKKGGDLGWFPRGKMAGPFQEVSFNTPVGVTSAPFKSTHGYHII 501
            T ++A+HIL E +  + E  +K++DG           +F ++A EYS +  S + GGDLG+F  G M   F+E +F+   G  S P +STHG HII
Sbjct:  138 TEIQAQHILLENEEDVAEVQQKIEDG----------EDFGELAQEYSTDTGSAENGGDLGYFSAGSMVPEFEEAAFSLEAGEISDPVQSTHGTHII 223          
BLAST of FC876797 vs. ExPASy Swiss-Prot
Match: PRSA_BACHD (Foldase protein prsA OS=Bacillus halodurans GN=prsA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.806e-11
Identity = 39/101 (38.61%), Postives = 57/101 (56.44%), Query Frame = 1
Query:  223 VKARHILCEKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGK-KGGDLGWFPRGKMAGPFQEVSFNTPVGVTSAPFKSTHGYHIILCEGRKN 522
            V+A HIL E +    E   +L+ G           +F+++A+EYS  PS +   GDLG+F +G M   F+E +FN  +   S P +ST+GYHIIL   RK+
Sbjct:  158 VEASHILVEDEETAEEVLDRLEAG----------DDFAELASEYSVDPSAEANNGDLGFFGKGDMVPEFEEAAFNMEIDEVSEPVESTYGYHIILVTDRKD 248          
The following BLAST results are available for this feature:
BLAST of FC876797 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
PIN4_ASPFU4.329e-1238.53Peptidyl-prolyl cis-trans isomerase pin4 OS=Asperg... [more]
PRSA_GEOKA7.385e-1241.49Foldase protein prsA OS=Geobacillus kaustophilus G... [more]
PRSA_OCEIH2.149e-1138.54Foldase protein prsA OS=Oceanobacillus iheyensis G... [more]
PRSA_BACHD2.806e-1138.61Foldase protein prsA OS=Bacillus halodurans GN=prs... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN3AH08RM1 EHR Citrus clementina cDNA clone KN0AAN3AH08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876797 ID=FC876797; Name=FC876797; organism=Citrus clementina; type=EST; length=688bp
GCACGAGGGTTGGCTGCTGGTTCTTTTGTGTTTCTGAGTTACTCTGTTGA
ACCCTTTCGATCGAAGTCAAATCTTTTTTAAGATTTTTCACCTATGGGAA
AGGATTCTAAACCAAAGGATGGAGGGAAGGGTAAAGGAAAACAGGCAGCT
GGTGGAGCTGATGATTCAAAGGGTAAAGGAAAAGGCGGGAAGTCAGCTGA
TGGCCTCGGCACCTGCACATATGTCAAAGCACGACACATCTTATGTGAGA
AGCAAGGGAAGATCAATGAGGCATACAAGAAGCTGCAAGATGGTTGGCTG
AGCAATGGGGACAAGGTTCCACAAGCTGAGTTTTCAAAGATAGCTGCAGA
ATACTCAGAATGCCCGTCAGGAAAGAAGGGCGGAGATCTTGGATGGTTTC
CACGTGGAAAGATGGCTGGCCCATTTCAGGAAGTTTCCTTCAATACTCCT
GTTGGAGTTACCAGTGCACCTTTCAAATCTACGCATGGATACCACATAAT
CTTGTGTGAAGGGAGGAAGAATTGATCGGAAACAGTATGCCAATGAAGGG
AATCTCTGAAGGGCGAGCATGGAGATGAAAATAATGTTATTGTATAATAT
GTGAATCTGGCTCATCCATGATGGTTGACATCCGTGACTGATTGATGCTT
TTATGGTTCGAAGTTAAATGTTAAATGAGTACTTTTCT
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