FC876820

Overview
NameFC876820
Unique NameFC876820
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length607
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC876820 vs. ExPASy Swiss-Prot
Match: LEUC_BACC0 (3-isopropylmalate dehydratase large subunit OS=Bacillus cereus (strain AH820) GN=leuC PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.435e-11
Identity = 69/225 (30.67%), Postives = 96/225 (42.67%), Query Frame = 2 
Query:    5 EATFKYLEDKTSLP--YEP-------VYSDEKASFLSEYRFDISKLEPLVAKPHSP-----------------DNRALA-------RECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVK--VPTFLVPATQKVWMDVYTLPVP*SGGKTCSQIFEEAGCDTPASPTCGACLGGPTDTYARMNEPMVCVSTTNRNFPGPMGHKEGHIYLASPYTAATSAL 574
            E TF Y++ +   P  YE        +Y+D  A +      D++ L P V    +P                 D RA +       +   D+ +  V+IGSCT  +  D   AA V    G+KVK  V   +VP +++V  D        +  K    IFEEAG +    P C  CLG   D   ++ E   C ST+NRNF G  G K    +L SP  AA +AL
Sbjct:  236 EKTFAYVKGRKYAPRDYETFEKKWFELYTDADAIYDLHISIDVTDLAPYVTWGTNPSMGVRIDEKLPEKHDVNDERAFSYMGLIPGQSTYDIPVQHVFIGSCTNSRLSDLEIAASV--VKGRKVKEGVRALVVPGSKRV-RDA-------AMQKGLHHIFEEAGFEW-REPGCSMCLGMNPD---QVPEGEHCASTSNRNFEGRQG-KGARTHLVSPAMAAAAAL 445
[Close]
BLAST of FC876820 vs. ExPASy Swiss-Prot
Match: LEUC_BACAN (3-isopropylmalate dehydratase large subunit OS=Bacillus anthracis GN=leuC PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.435e-11
Identity = 69/225 (30.67%), Postives = 96/225 (42.67%), Query Frame = 2 
Query:    5 EATFKYLEDKTSLP--YEP-------VYSDEKASFLSEYRFDISKLEPLVAKPHSP-----------------DNRALA-------RECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVK--VPTFLVPATQKVWMDVYTLPVP*SGGKTCSQIFEEAGCDTPASPTCGACLGGPTDTYARMNEPMVCVSTTNRNFPGPMGHKEGHIYLASPYTAATSAL 574
            E TF Y++ +   P  YE        +Y+D  A +      D++ L P V    +P                 D RA +       +   D+ +  V+IGSCT  +  D   AA V    G+KVK  V   +VP +++V  D        +  K    IFEEAG +    P C  CLG   D   ++ E   C ST+NRNF G  G K    +L SP  AA +AL
Sbjct:  236 EKTFAYVKGRKYAPRDYETFEKKWFELYTDADAIYDLHISIDVTDLAPYVTWGTNPSMGVRIDEKLPEKHDVNDERAFSYMGLIPGQSTYDIPVQHVFIGSCTNSRLSDLEIAASV--VKGRKVKEGVRALVVPGSKRV-RDA-------AMQKGLHHIFEEAGFEW-REPGCSMCLGMNPD---QVPEGEHCASTSNRNFEGRQG-KGARTHLVSPAMAAAAAL 445
[Close]
BLAST of FC876820 vs. ExPASy Swiss-Prot
Match: LEUC_BACAC (3-isopropylmalate dehydratase large subunit OS=Bacillus anthracis (strain CDC 684 / NRRL 3495) GN=leuC PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.435e-11
Identity = 69/225 (30.67%), Postives = 96/225 (42.67%), Query Frame = 2 
Query:    5 EATFKYLEDKTSLP--YEP-------VYSDEKASFLSEYRFDISKLEPLVAKPHSP-----------------DNRALA-------RECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVK--VPTFLVPATQKVWMDVYTLPVP*SGGKTCSQIFEEAGCDTPASPTCGACLGGPTDTYARMNEPMVCVSTTNRNFPGPMGHKEGHIYLASPYTAATSAL 574
            E TF Y++ +   P  YE        +Y+D  A +      D++ L P V    +P                 D RA +       +   D+ +  V+IGSCT  +  D   AA V    G+KVK  V   +VP +++V  D        +  K    IFEEAG +    P C  CLG   D   ++ E   C ST+NRNF G  G K    +L SP  AA +AL
Sbjct:  236 EKTFAYVKGRKYAPRDYETFEKKWFELYTDADAIYDLHISIDVTDLAPYVTWGTNPSMGVRIDEKLPEKHDVNDERAFSYMGLIPGQSTYDIPVQHVFIGSCTNSRLSDLEIAASV--VKGRKVKEGVRALVVPGSKRV-RDA-------AMQKGLHHIFEEAGFEW-REPGCSMCLGMNPD---QVPEGEHCASTSNRNFEGRQG-KGARTHLVSPAMAAAAAL 445
[Close]
BLAST of FC876820 vs. ExPASy Swiss-Prot
Match: LEUC_BACAA (3-isopropylmalate dehydratase large subunit OS=Bacillus anthracis (strain A0248) GN=leuC PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.435e-11
Identity = 69/225 (30.67%), Postives = 96/225 (42.67%), Query Frame = 2 
Query:    5 EATFKYLEDKTSLP--YEP-------VYSDEKASFLSEYRFDISKLEPLVAKPHSP-----------------DNRALA-------RECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVK--VPTFLVPATQKVWMDVYTLPVP*SGGKTCSQIFEEAGCDTPASPTCGACLGGPTDTYARMNEPMVCVSTTNRNFPGPMGHKEGHIYLASPYTAATSAL 574
            E TF Y++ +   P  YE        +Y+D  A +      D++ L P V    +P                 D RA +       +   D+ +  V+IGSCT  +  D   AA V    G+KVK  V   +VP +++V  D        +  K    IFEEAG +    P C  CLG   D   ++ E   C ST+NRNF G  G K    +L SP  AA +AL
Sbjct:  236 EKTFAYVKGRKYAPRDYETFEKKWFELYTDADAIYDLHISIDVTDLAPYVTWGTNPSMGVRIDEKLPEKHDVNDERAFSYMGLIPGQSTYDIPVQHVFIGSCTNSRLSDLEIAASV--VKGRKVKEGVRALVVPGSKRV-RDA-------AMQKGLHHIFEEAGFEW-REPGCSMCLGMNPD---QVPEGEHCASTSNRNFEGRQG-KGARTHLVSPAMAAAAAL 445
The following BLAST results are available for this feature:
BLAST of FC876820 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 284
Match NameE-valueIdentityDescription
LEUC_BACC08.435e-1130.673-isopropylmalate dehydratase large subunit OS=Bac... [more]
LEUC_BACAN8.435e-1130.673-isopropylmalate dehydratase large subunit OS=Bac... [more]
LEUC_BACAC8.435e-1130.673-isopropylmalate dehydratase large subunit OS=Bac... [more]
LEUC_BACAA8.435e-1130.673-isopropylmalate dehydratase large subunit OS=Bac... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN1CC08RM1 EHR Citrus clementina cDNA clone KN0AAN1CC08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876820 ID=FC876820; Name=FC876820; organism=Citrus clementina; type=EST; length=607bp
GCACGAGGCAACATTTAAATATCTTGAGGATAAGACATCGTTGCCCTATG
AACCAGTTTATAGTGATGAGAAAGCAAGTTTCCTGTCCGAATACAGATTT
GATATCTCGAAGCTGGAGCCACTGGTGGCAAAGCCTCATTCTCCTGACAA
TCGGGCTTTAGCAAGAGAGTGCAAAGATGTAAAAATTGACAGAGTATACA
TTGGATCTTGCACTGGTGGAAAAACAGAAGACTTTCTTGCTGCAGCGAAA
GTCTTCTTAGCTTCAGGCAAAAAGGTCAAAGTTCCAACATTTCTTGTCCC
TGCTACCCAAAAGGTATGGATGGACGTATACACTCTTCCAGTACCATGAT
CTGGTGGCAAGACTTGCTCTCAGATATTTGAAGAAGCTGGTTGCGACACA
CCTGCGAGTCCTACTTGCGGTGCTTGTTTGGGTGGCCCTACAGACACTTA
TGCACGCATGAATGAACCTATGGTCTGTGTCTCCACGACAAATAGGAACT
TCCCTGGACCGATGGGACACAAAGAAGGCCATATATATCTTGCTTCTCCA
TACACAGCTGCAACATCTGCTTTGACTGTTTATGTCCCTGATCCTAAGGA
GTTCTTG
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