FC876820

Overview
NameFC876820
Unique NameFC876820
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length607
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876820 vs. ExPASy Swiss-Prot
Match: LEUC1_PYRAB (3-isopropylmalate dehydratase large subunit 1 OS=Pyrococcus abyssi GN=leuC1 PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 5.442e-26
Identity = 73/201 (36.32%), Postives = 108/201 (53.73%), Query Frame = 2
Query:   11 TFKYLEDKTSLPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRA-LARECK-DVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVK--VPTFLVPATQKVWMDVYTLPVP*SGGKTCSQIFEEAGCDTPASPTCGACLGGPTDTYARMNEPMVCVSTTNRNFPGPMGHKEGHIYLASPYTAATSALTVYVPDPKE 601
            T  Y++++    ++   SDE A +     +D++  EP+VA PH P+N   +++  K ++KID+V+IGSCT G+ ED   AA++    G+KV   V   ++P +  V+             +   +IF EAG      PTCG CLGG     A        VSTTNRNF G MGH +  +YLA+PY AA SA+   +  P+E
Sbjct:  234 TLDYVKERAKRKFKVYKSDEDAKYYKVIEYDVTNWEPVVAFPHLPENTVPISKAAKMNIKIDQVFIGSCTNGRIEDLRMAAEIL--EGQKVAKWVRLIVIPCSPTVYWKALK--------EGLIEIFLEAGA-VIGPPTCGPCLGGHMGVLASGER---AVSTTNRNFVGRMGHPKSEVYLANPYVAAASAVLGRIASPEE 420          
BLAST of FC876820 vs. ExPASy Swiss-Prot
Match: LEUC_PYRAE (3-isopropylmalate dehydratase large subunit OS=Pyrobaculum aerophilum GN=leuC PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 7.108e-26
Identity = 71/199 (35.68%), Postives = 106/199 (53.27%), Query Frame = 2
Query:   11 TFKYLEDKTSLPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVP*SGGKTCSQIFEEAGCDTPASPTCGACLGGPTDTYARMNEPMVCVSTTNRNFPGPMGHKEGHIYLASPYTAATSALTVYVPDPKEFL 607
            T +YL+ +  + Y P    E  ++  +Y  ++ +LEPLVA P+S DN    RE + V++D+V+IGSCT G+  D   AAK+    G++VK     +PA+ +V+     L            +  EAGC      TCG CLGG    +       V V+T+NRNF G +GH +  IYLA+P  AA +A    + DP+ +L
Sbjct:  230 TAEYLKTERGVDYTPPRI-EPGNYADKYTVELPRLEPLVAAPYSVDNIKSVREVEGVEVDQVFIGSCTNGRLSDIAVAAKIL--KGRRVKSRCIAIPASYEVFRRAMKLGY--------IDVLTEAGC-VVTYGTCGPCLGG---HFGVAGPGEVVVTTSNRNFRGRVGHPDAKIYLANPAVAAATAAEGKIADPRPYL 413          
BLAST of FC876820 vs. ExPASy Swiss-Prot
Match: LEUC_PYRCJ (3-isopropylmalate dehydratase large subunit OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=leuC PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.584e-25
Identity = 71/201 (35.32%), Postives = 105/201 (52.24%), Query Frame = 2
Query:    5 EATFKYLEDKTSLPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVP*SGGKTCSQIFEEAGCDTPASPTCGACLGGPTDTYARMNEPMVCVSTTNRNFPGPMGHKEGHIYLASPYTAATSALTVYVPDPKEFL 607
            E T  YL +   + Y+P        +  EY  ++ +LEPLVA PHS DN     E + +++D+V+IGSCT G+  D   AAK+ L  G +VK     +PA+  V+     L            +  +AGC      TCG CLGG    +       V ++T+NRNF G +GH +  +YLA+P  AA +ALT  + DP+++L
Sbjct:  228 EVTVAYLHEARGVSYKPPALGG-GKYADEYTVELGRLEPLVAAPHSVDNVKAVAEVEGIEVDQVFIGSCTNGRLSDIEVAAKI-LRHG-RVKARCIAIPASYDVFRRAMELGY--------VDVLTKAGC-VVTYGTCGPCLGG---HFGVAGPGEVVLTTSNRNFKGRVGHPDSKVYLANPAVAAATALTGRITDPRQYL 413          
BLAST of FC876820 vs. ExPASy Swiss-Prot
Match: LEUC_THETN (3-isopropylmalate dehydratase large subunit OS=Thermoanaerobacter tengcongensis GN=leuC PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.068e-25
Identity = 72/201 (35.82%), Postives = 103/201 (51.24%), Query Frame = 2
Query:    5 EATFKYLEDKTSLPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKV--KVPTFLVPATQKVWMDVYTLPVP*SGGKTCSQIFEEAGCDTPASPTCGACLGGPTDTYARMNEPMVCVSTTNRNFPGPMGHKEGHIYLASPYTAATSALTVYVPDPKE 601
            E T  Y++ +    Y+    DE A +      ++  + P VA PH P+N     E   VKID+V IGSCT G+  D   A ++    GKKV   V   + PATQ+++++           +   + F +AG    ++PTCG CLGG     A+       ++TTNRNF G MGH E  +YLASP  AA SA+  Y+  P+E
Sbjct:  230 EITEAYVKKRAKREYKVFERDEDAEYSEVIEINLDDIRPQVAFPHLPENTRSIDEVGKVKIDQVVIGSCTNGRLSDMEIAYRIL--KGKKVHPDVRLIIFPATQEIYLECVK--------RGYIEEFIKAGA-AVSTPTCGPCLGGHMGVLAKGER---ALATTNRNFVGRMGHPESEVYLASPAVAAASAIAGYIVSPEE 416          
BLAST of FC876820 vs. ExPASy Swiss-Prot
Match: LEUC_THEP3 (3-isopropylmalate dehydratase large subunit OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=leuC PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.068e-25
Identity = 72/201 (35.82%), Postives = 103/201 (51.24%), Query Frame = 2
Query:    5 EATFKYLEDKTSLPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKV--KVPTFLVPATQKVWMDVYTLPVP*SGGKTCSQIFEEAGCDTPASPTCGACLGGPTDTYARMNEPMVCVSTTNRNFPGPMGHKEGHIYLASPYTAATSALTVYVPDPKE 601
            E T  Y++ +    Y+    D  A +   Y   + ++ P VA PH P+N     E   VKID+V IGSCT G+  D   A K+    GKKV   V   + PATQ+++++           +   + F +AG    ++PTCG CLGG     A+       ++TTNRNF G MGH E  +YL+SP  AA SA+  Y+  P+E
Sbjct:  230 EITEAYVKGRAKREYKVFERDVDAEYSEVYEISLDEIRPQVAFPHLPENTRNIDEVGKVKIDQVVIGSCTNGRISDMEIAYKIL--KGKKVHPDVRLLIFPATQEIYLECVK--------RGYIEEFIKAGA-AVSTPTCGPCLGGHMGILAKGER---ALATTNRNFVGRMGHPESEVYLSSPAVAAASAIAGYIVSPEE 416          
BLAST of FC876820 vs. ExPASy Swiss-Prot
Match: LEUC_GEOSL (3-isopropylmalate dehydratase large subunit OS=Geobacter sulfurreducens GN=leuC PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.528e-25
Identity = 76/185 (41.08%), Postives = 100/185 (54.05%), Query Frame = 2
Query:   62 SDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKV--KVPTFLVPATQKVWMDVYTLPVP*SGGKTCSQIFEEAG-CDTPASPTCGACLGGPTDTYARMNEPMVCVSTTNRNFPGPMGHKEGHIYLASPYTAATSALTVYVPDPKEFL 607
            SDE A +     FD+S LEP+V   + PD      E     +D+VY+GSCT G+ ED   AA++    GKK+   V   L PAT K++ D           +    IF EAG C T  +PTCGACLG      A   E  VC STTNRNF G MG K G ++L SP T+A +A+   + DP+++L
Sbjct:  259 SDEDAVYEQVLDFDVSSLEPIVTFGYKPDQVKPVSEIAGTPVDQVYLGSCTNGRLEDLRIAARIL--KGKKIAPTVRGILSPATPKIYQDAMR--------EGLIDIFMEAGFCVT--NPTCGACLGMSNGVLA---EGEVCASTTNRNFMGRMG-KGGMVHLMSPATSAATAIEGKIADPRKYL 427          
BLAST of FC876820 vs. ExPASy Swiss-Prot
Match: LEUC_METJA (Isopropylmalate/citramalate isomerase large subunit OS=Methanocaldococcus jannaschii GN=leuC PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 6.017e-25
Identity = 72/205 (35.12%), Postives = 104/205 (50.73%), Query Frame = 2
Query:    5 EATFKYLEDK-----TSLPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKV-KVPTFLVPATQKVWMDVYTLPVP*SGGKTCSQIFEEAGCDTPASPTCGACLGGPTDTYARMNEPMVCVSTTNRNFPGPMGHKEGHIYLASPYTAATSALTVYVPDPKE 601
            E T +Y+++      T  P+E +  DE A F   Y  +  K+EP+ A PH+ DN   ARE     ID+V+IGSCT G+ ED   A K+    G     V   + PA+++ ++            +   + F + GC    +P+C AC+G     Y  +    VCVST+NRNF G  G  E  IYLASP TAA  A+   + DP++
Sbjct:  231 EKTIQYVKEAMKKHGTERPFEVIKGDEDAEFAEVYEIEADKIEPVFACPHNVDNVKQAREVAGKPIDQVFIGSCTNGRLEDLRMAIKIIEKHGGIADDVRVVVTPASREEYLKALK--------EGIIEKFLKYGC-VVTNPSCSACMG---SLYGVLGPGEVCVSTSNRNFRGRQGSLEAEIYLASPITAAACAVKGELVDPRD 423          
BLAST of FC876820 vs. ExPASy Swiss-Prot
Match: LEUC_CAMHC (3-isopropylmalate dehydratase large subunit OS=Campylobacter hominis (strain ATCC BAA-381 / LMG 19568 / NCTC 13146 / CH001A) GN=leuC PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 6.017e-25
Identity = 79/204 (38.73%), Postives = 108/204 (52.94%), Query Frame = 2
Query:    5 EATFKYLEDKTSLPYEP--VYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALAREC--KDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLV--PATQKVWMDVYTLPVP*SGGKTCSQIFEEAGCDTPASPTCGACLGGPTDTYARMNEPMVCVSTTNRNFPGPMGHKEGHIYLASPYTAATSALTVYVPDPK 598
            E T ++ +DK +L  EP   YSDE A +      D+S LEP+VA P  P N     +    ++KID+ +IGSCT G+  D   AA++    GKKV   T L+  PATQK++          +  +    IF +AG    ++PTCGACLGG             CVSTTNRNF G MG +   +YLA+    A SA+T  + DP+
Sbjct:  230 EITKQFFKDK-NLRAEPKYFYSDEDAFYERTVEIDMSALEPMVAYPFLPSNGKTITQAVADELKIDQAFIGSCTNGRLSDLRIAAEIL--KGKKVAKKTRLIITPATQKIYKA--------AEHEGLIDIFIDAGA-VVSNPTCGACLGGYMGILGANER---CVSTTNRNFVGRMGDRTSEVYLANSAVVAASAITGKITDPR 418          
BLAST of FC876820 vs. ExPASy Swiss-Prot
Match: LEUC_SYNAS (3-isopropylmalate dehydratase large subunit OS=Syntrophus aciditrophicus (strain SB) GN=leuC PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.341e-24
Identity = 70/199 (35.18%), Postives = 100/199 (50.25%), Query Frame = 2
Query:    5 EATFKYLEDKTSLPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVP*SGGKTCSQIFEEAGCDTPASPTCGACLGGPTDTYARMNEPMVCVSTTNRNFPGPMGHKEGHIYLASPYTAATSALTVYVPDPKE 601
            E T  Y++ +   PY    SD  A++      D++++EP VA PH P N     E   V +D+V IGSCT G+ ED  AAA V        +V   ++PATQ    ++Y + +     +    IF +A     ++PTCG CLGG     A        ++TTNRNF G MGH    +YL++P  AA SA+   +  P E
Sbjct:  232 EITEAYVKPRAKRPYTFYASDPDAAYAQVIEIDVNRIEPQVAFPHLPSNTKGISEVGQVPLDQVVIGSCTNGRIEDLRAAAAVLKGRKADPRVRLIVIPATQ----EIYRMAMK----EGLFDIFLDANA-AISTPTCGPCLGGHMGILAAGER---ALATTNRNFVGRMGHPRSEVYLSNPAVAAASAVLGRIAGPDE 418          
BLAST of FC876820 vs. ExPASy Swiss-Prot
Match: LEUC_CAMC5 (3-isopropylmalate dehydratase large subunit OS=Campylobacter curvus (strain 525.92) GN=leuC PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.341e-24
Identity = 79/205 (38.54%), Postives = 106/205 (51.71%), Query Frame = 2
Query:    5 EATFKYLEDKTSLPYEP--VYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALAREC--KDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLV--PATQKVWMDVYTLPVP*SGGKTCSQIFEEAGCDTPASPTCGACLGGPTDTYARMNEPMVCVSTTNRNFPGPMGHKEGHIYLASPYTAATSALTVYVPDPKE 601
            E T ++L+ K +L  EP   YSDE A +         KL+P++A P  P N    RE    D+ ID+ +IGSCT G+  D   AA++    G+KV   T L+  PATQK+ +            +    IF EAG    ++PTCGACLGG             CVSTTNRNF G MG +   +YLA+   AA SA+   + DP+E
Sbjct:  231 ETTREFLKGK-NLRAEPKFFYSDEGAGYERVLEIYADKLDPVIAYPFLPSNGKSVREAVKDDIAIDQAFIGSCTNGRLSDLRIAAEIL--KGRKVSRKTRLIITPATQKIALAAQK--------EGLMDIFVEAGA-VVSNPTCGACLGGYMGILGAGER---CVSTTNRNFVGRMGDRTSEVYLANSAVAAASAIAGKIADPRE 420          
The following BLAST results are available for this feature:
BLAST of FC876820 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 284
Match NameE-valueIdentityDescription
LEUC1_PYRAB5.442e-2636.323-isopropylmalate dehydratase large subunit 1 OS=P... [more]
LEUC_PYRAE7.108e-2635.683-isopropylmalate dehydratase large subunit OS=Pyr... [more]
LEUC_PYRCJ1.584e-2535.323-isopropylmalate dehydratase large subunit OS=Pyr... [more]
LEUC_THETN2.068e-2535.823-isopropylmalate dehydratase large subunit OS=The... [more]
LEUC_THEP32.068e-2535.823-isopropylmalate dehydratase large subunit OS=The... [more]
LEUC_GEOSL3.528e-2541.083-isopropylmalate dehydratase large subunit OS=Geo... [more]
LEUC_METJA6.017e-2535.12Isopropylmalate/citramalate isomerase large subuni... [more]
LEUC_CAMHC6.017e-2538.733-isopropylmalate dehydratase large subunit OS=Cam... [more]
LEUC_SYNAS1.341e-2435.183-isopropylmalate dehydratase large subunit OS=Syn... [more]
LEUC_CAMC51.341e-2438.543-isopropylmalate dehydratase large subunit OS=Cam... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN1CC08RM1 EHR Citrus clementina cDNA clone KN0AAN1CC08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876820 ID=FC876820; Name=FC876820; organism=Citrus clementina; type=EST; length=607bp
GCACGAGGCAACATTTAAATATCTTGAGGATAAGACATCGTTGCCCTATG
AACCAGTTTATAGTGATGAGAAAGCAAGTTTCCTGTCCGAATACAGATTT
GATATCTCGAAGCTGGAGCCACTGGTGGCAAAGCCTCATTCTCCTGACAA
TCGGGCTTTAGCAAGAGAGTGCAAAGATGTAAAAATTGACAGAGTATACA
TTGGATCTTGCACTGGTGGAAAAACAGAAGACTTTCTTGCTGCAGCGAAA
GTCTTCTTAGCTTCAGGCAAAAAGGTCAAAGTTCCAACATTTCTTGTCCC
TGCTACCCAAAAGGTATGGATGGACGTATACACTCTTCCAGTACCATGAT
CTGGTGGCAAGACTTGCTCTCAGATATTTGAAGAAGCTGGTTGCGACACA
CCTGCGAGTCCTACTTGCGGTGCTTGTTTGGGTGGCCCTACAGACACTTA
TGCACGCATGAATGAACCTATGGTCTGTGTCTCCACGACAAATAGGAACT
TCCCTGGACCGATGGGACACAAAGAAGGCCATATATATCTTGCTTCTCCA
TACACAGCTGCAACATCTGCTTTGACTGTTTATGTCCCTGATCCTAAGGA
GTTCTTG
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