FC876820
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC876820 vs. ExPASy Swiss-Prot
Match: LEUC_GEOUR (3-isopropylmalate dehydratase large subunit OS=Geobacter uraniireducens (strain Rf4) GN=leuC PE=3 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 2.287e-24 Identity = 77/186 (41.40%), Postives = 100/186 (53.76%), Query Frame = 2 Query: 59 YSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKV--KVPTFLVPATQKVWMDVYTLPVP*SGGKTCSQIFEEAG-CDTPASPTCGACLGGPTDTYARMNEPMVCVSTTNRNFPGPMGHKEGHIYLASPYTAATSALTVYVPDPKEFL 607 +SDE A + DIS LEP+V + PD E +D+VY+GSCT G+ ED AA++ GKK+ V L PAT KV+ D + IF EAG C T +PTCGACLG A E VC STTNRNF G MG K G ++L SP T+A +A+ + DP+++L Sbjct: 258 WSDEDAVYERVLDLDISGLEPVVTFGYKPDQVKTITEMAGTPVDQVYLGSCTNGRLEDLRVAAEIL--KGKKIAPTVRAILSPATPKVYSDAL--------HEGLIDIFMEAGFCVT--NPTCGACLGMSNGVLA---EGEVCASTTNRNFMGRMG-KGGMVHLMSPATSAATAIEGKMADPRKYL 427
BLAST of FC876820 vs. ExPASy Swiss-Prot
Match: LEUC_GEOMG (3-isopropylmalate dehydratase large subunit OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=leuC PE=3 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 2.287e-24 Identity = 75/185 (40.54%), Postives = 100/185 (54.05%), Query Frame = 2 Query: 62 SDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKV--KVPTFLVPATQKVWMDVYTLPVP*SGGKTCSQIFEEAG-CDTPASPTCGACLGGPTDTYARMNEPMVCVSTTNRNFPGPMGHKEGHIYLASPYTAATSALTVYVPDPKEFL 607 SD+ A + FD+S LEP+V + PD E +D+VY+GSCT G+ ED AA++ GKK+ V L PAT K++ D + IF EAG C T +PTCGACLG A E VC STTNRNF G MG K G ++L SP T+A +A+ + DP+++L Sbjct: 259 SDDDAVYERVLDFDVSVLEPIVTFGYKPDQVKPISEIAGSPVDQVYLGSCTNGRLEDLRIAARIL--KGKKIAPSVRGILSPATPKIYKDAM--------AEGLIDIFMEAGFCVT--NPTCGACLGMSNGVLA---EGEVCASTTNRNFMGRMG-KGGMVHLMSPATSAATAIEGVIADPRKYL 427
BLAST of FC876820 vs. ExPASy Swiss-Prot
Match: LEUC_WOLSU (3-isopropylmalate dehydratase large subunit OS=Wolinella succinogenes GN=leuC PE=3 SV=1) HSP 1 Score: 111.694 bits (278), Expect = 2.986e-24 Identity = 71/201 (35.32%), Postives = 106/201 (52.74%), Query Frame = 2 Query: 11 TFKYLEDKTSLPYEPVY--SDEKASFLSEYRFDISKLEPLVAKPHSPDN-RALARECKD-VKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVP*SGGKTCSQIFEEAGCDTPASPTCGACLGGPTDTYARMNEPMVCVSTTNRNFPGPMGHKEGHIYLASPYTAATSALTVYVPDPKE 601 T ++L + SL EP Y +D A + D+ KLEP++A P P N +++++ KD +KID+ +IGSCT G+ D AA++ V + P TQ+++ D + + EAG ++PTCGACLGG + + CVSTTNRNF G MG + +YLA+ AA SAL + DP++ Sbjct: 233 TKEFLASRKSLRAEPKYYQADADALYEQTIEIDVEKLEPVIAYPFLPSNGKSISQAVKDDLKIDQAFIGSCTNGRLSDLRIAAQILKGKRVHPDVRLIITPGTQQIYKDAHQ--------EGLIDTLLEAGA-LISNPTCGACLGGYMGI---LGDNERCVSTTNRNFVGRMGARSSEVYLANSAVAAASALKGKITDPRK 421
BLAST of FC876820 vs. ExPASy Swiss-Prot
Match: LEUC_SULNB (3-isopropylmalate dehydratase large subunit OS=Sulfurovum sp. (strain NBC37-1) GN=leuC PE=3 SV=1) HSP 1 Score: 111.309 bits (277), Expect = 3.900e-24 Identity = 72/185 (38.92%), Postives = 98/185 (52.97%), Query Frame = 2 Query: 59 YSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALAREC--KDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLV--PATQKVWMDVYTLPVP*SGGKTCSQIFEEAGCDTPASPTCGACLGGPTDTYARMNEPMVCVSTTNRNFPGPMGHKEGHIYLASPYTAATSALTVYVPDPKE 601 YSDE A++ D+ L P++A P P N + D+KID+V IGSCT G+ ED AA++ GK+V T ++ PATQK+ M + I EAG ++PTCGACLGG + + CV+TTNRNF G MG + IYLA+ AA SA+ + DP+E Sbjct: 255 YSDEDATYCQVVTIDVENLSPVIAYPFLPSNGKPVEQAVKDDLKIDQVMIGSCTNGRIEDLRIAAEIM--KGKRVAKHTRMIVTPATQKILMQAQH--------EGLMDILIEAGA-VVSNPTCGACLGGYMGI---LGDGERCVATTNRNFVGRMGARTSEIYLANSAVAAASAIAGKIVDPRE 425
BLAST of FC876820 vs. ExPASy Swiss-Prot
Match: LEUC_DESVM (3-isopropylmalate dehydratase large subunit OS=Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637) GN=leuC PE=3 SV=1) HSP 1 Score: 110.923 bits (276), Expect = 5.094e-24 Identity = 71/183 (38.80%), Postives = 96/183 (52.46%), Query Frame = 2 Query: 53 PVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVK--VPTFLVPATQKVWMDVYTLPVP*SGGKTCSQIFEEAGCDTPASPTCGACLGGPTDTYARMNEPMVCVSTTNRNFPGPMGHKEGHIYLASPYTAATSALTVYVPDP 595 P+ +D A++ E FD+S +EPLVA PH P+N E + V +D+V IGSCT G+ D AA+V G+KV V ++PAT VW + + + F E+GC TCG CLGG A + ++TTNRNF G MG E +YLASP AA SA+ + P Sbjct: 247 PLSADPGATYERELTFDVSGMEPLVACPHLPENVKPVGEVRGVTLDQVVIGSCTNGRISDMREAAEVL--KGRKVAKGVRCIVLPATPGVWKEALK--------EGLIETFMESGC-IVGPATCGPCLGGHMGILA---DGERAIATTNRNFRGRMGSLESEVYLASPAVAAASAVAGIIAHP 415
BLAST of FC876820 vs. ExPASy Swiss-Prot
Match: LEUC_CAMC1 (3-isopropylmalate dehydratase large subunit OS=Campylobacter concisus (strain 13826) GN=leuC PE=3 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 6.653e-24 Identity = 77/205 (37.56%), Postives = 107/205 (52.20%), Query Frame = 2 Query: 5 EATFKYLEDKTSLPYEP--VYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALAREC--KDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLV--PATQKVWMDVYTLPVP*SGGKTCSQIFEEAGCDTPASPTCGACLGGPTDTYARMNEPMVCVSTTNRNFPGPMGHKEGHIYLASPYTAATSALTVYVPDPKE 601 E T ++L+DK +L +P YSDE A + D++ L+P++A P P N R+ D+ ID+ +IGSCT G+ D AA++ GKKV T L+ PATQK+ + IF EAG ++PTCGACLGG C+STTNRNF G MG + IYLA+ A SA+ + DP++ Sbjct: 231 EITKEFLKDK-NLRDKPKFFYSDEGAKYDKILEIDVTNLDPVIAYPFLPSNGKSVRQAVRDDLAIDQAFIGSCTNGRLSDLRIAAQIL--KGKKVARKTRLIITPATQKIARAAEK--------EGLIDIFIEAGA-VVSNPTCGACLGGYMGILGANER---CISTTNRNFVGRMGDRTSEIYLANSAVVAASAIAGKIADPRD 420
BLAST of FC876820 vs. ExPASy Swiss-Prot
Match: LEUC_GEOBB (3-isopropylmalate dehydratase large subunit OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) GN=leuC PE=3 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 8.689e-24 Identity = 74/185 (40.00%), Postives = 98/185 (52.97%), Query Frame = 2 Query: 62 SDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKV--KVPTFLVPATQKVWMDVYTLPVP*SGGKTCSQIFEEAG-CDTPASPTCGACLGGPTDTYARMNEPMVCVSTTNRNFPGPMGHKEGHIYLASPYTAATSALTVYVPDPKEFL 607 SD A++ D+S L PL + PD E ++D+VY+GSCT G+ ED AA++ GKK+ V L PAT +++ D + QIF +AG C T +PTCGACLG A E VC STTNRNF G MG K G ++L SP TAA SA+ + DP+ +L Sbjct: 259 SDADAAYEQVIDLDLSDLAPLCTFGYKPDQVKSVTEMAGTQVDQVYLGSCTNGRLEDLRVAAQIL--KGKKIASHVRAILSPATPQIYKDAV--------AEGLIQIFMDAGFCVT--NPTCGACLGMSNGVLA---EGEVCASTTNRNFMGRMG-KGGMVHLLSPATAAASAIEGKIADPRNYL 427
BLAST of FC876820 vs. ExPASy Swiss-Prot
Match: LEUC2_DEIRA (3-isopropylmalate dehydratase large subunit 2 OS=Deinococcus radiodurans GN=leuC2 PE=3 SV=1) HSP 1 Score: 109.768 bits (273), Expect = 1.135e-23 Identity = 70/210 (33.33%), Postives = 105/210 (50.00%), Query Frame = 2 Query: 5 EATFKYLEDKTSLP--YEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVK--VPTFLVPATQKVWMDVYTLPVP*SGGKTCSQIFEEAGCDTPASPTCGACLG------GPTDTYARMNEPMVCVSTTNRNFPGPMGHKEGHIYLASPYTAATSALTVYVPDPKEF 604 + T Y++ + P Y SD A + D +++EP VA PH P N +A + +++ Y+GSCT G+ D A++ G+KV V +VPATQ +W + + +IF +AG + P+CGACLG GP D +C+S++NRNF G MG IYLASP T A SA+ ++ DP+ + Sbjct: 232 DTTRAYMQQRGVSPEQYTEYQSDPDAKYKVVVEIDAAQVEPTVAYPHIPSNGRVAGSDR-IRVTHAYVGSCTNGRITDLRDVARIL--KGRKVAQDVQMIVVPATQAIWKQ--------AAQEGLLEIFVDAGASV-SYPSCGACLGMHSGVLGPDD---------ICISSSNRNFVGRMGDPSAQIYLASPATVAASAVEGFIADPRRY 420
BLAST of FC876820 vs. ExPASy Swiss-Prot
Match: HACA_METJA (Homoaconitase large subunit OS=Methanocaldococcus jannaschii GN=hacA PE=1 SV=1) HSP 1 Score: 109.768 bits (273), Expect = 1.135e-23 Identity = 70/203 (34.48%), Postives = 102/203 (50.25%), Query Frame = 2 Query: 5 EATFKYLEDKTSLPYEPV---------YSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVP*SGGKTCSQIFEEAGCDTPASPTCGACLGGPTDTYARMNEPMVCVSTTNRNFPGPMGHKEGHIYLASPYTAATSALTVYV 586 E T+ YL+ + L E + + ++A++ E DI+ +E VA PH PDN + + +I++V+IGSCT G+ D AAK V ++PA++KV++ + IF +AG +P CG CLG A E +C+STTNRNF G MGH +IYLASP AA SA+ Y+ Sbjct: 225 EITYDYLKKERGLSDEDIAKLKKERITVNRDEANYYKEIEIDITDMEEQVAVPHHPDNVKPISDVEGTEINQVFIGSCTNGRLSDLREAAKYLKGREVHKDVKLIVIPASKKVFLQALK--------EGIIDIFVKAGA-MICTPGCGPCLGAHQGVLA---EGEICLSTTNRNFKGRMGHINSYIYLASPKIAAISAVKGYI 415
BLAST of FC876820 vs. ExPASy Swiss-Prot
Match: LEUC_DESVV (3-isopropylmalate dehydratase large subunit OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=leuC PE=3 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 1.482e-23 Identity = 70/180 (38.89%), Postives = 92/180 (51.11%), Query Frame = 2 Query: 62 SDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVK--VPTFLVPATQKVWMDVYTLPVP*SGGKTCSQIFEEAGCDTPASPTCGACLGGPTDTYARMNEPMVCVSTTNRNFPGPMGHKEGHIYLASPYTAATSALTVYVPDP 595 +D A + E FD++ + P+VA PH PDN E KDV + +V IGSCT G+ D AA V G+KV V ++PAT +W + + F EAGC TCG CLGG A + ++TTNRNF G MG E +YL+ P TAA SA+T + DP Sbjct: 251 ADAGAVYERELSFDVTGMTPVVACPHLPDNVKPVSEVKDVTVQQVVIGSCTNGRIGDLREAAAVL--RGRKVSRDVRCIVLPATPGIWRQALR--------EGLIETFMEAGC-IVGPATCGPCLGGHMGILA---DGERAIATTNRNFKGRMGSLESEVYLSGPATAAASAVTGVITDP 416 The following BLAST results are available for this feature:
BLAST of FC876820 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 284
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Sequences
The
following sequences are available for this feature:
EST sequence >FC876820 ID=FC876820; Name=FC876820; organism=Citrus clementina; type=EST; length=607bpback to top |