FC876820

Overview
NameFC876820
Unique NameFC876820
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length607
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876820 vs. ExPASy Swiss-Prot
Match: LEUC_GEOUR (3-isopropylmalate dehydratase large subunit OS=Geobacter uraniireducens (strain Rf4) GN=leuC PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.287e-24
Identity = 77/186 (41.40%), Postives = 100/186 (53.76%), Query Frame = 2
Query:   59 YSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKV--KVPTFLVPATQKVWMDVYTLPVP*SGGKTCSQIFEEAG-CDTPASPTCGACLGGPTDTYARMNEPMVCVSTTNRNFPGPMGHKEGHIYLASPYTAATSALTVYVPDPKEFL 607
            +SDE A +      DIS LEP+V   + PD      E     +D+VY+GSCT G+ ED   AA++    GKK+   V   L PAT KV+ D           +    IF EAG C T  +PTCGACLG      A   E  VC STTNRNF G MG K G ++L SP T+A +A+   + DP+++L
Sbjct:  258 WSDEDAVYERVLDLDISGLEPVVTFGYKPDQVKTITEMAGTPVDQVYLGSCTNGRLEDLRVAAEIL--KGKKIAPTVRAILSPATPKVYSDAL--------HEGLIDIFMEAGFCVT--NPTCGACLGMSNGVLA---EGEVCASTTNRNFMGRMG-KGGMVHLMSPATSAATAIEGKMADPRKYL 427          
BLAST of FC876820 vs. ExPASy Swiss-Prot
Match: LEUC_GEOMG (3-isopropylmalate dehydratase large subunit OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=leuC PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.287e-24
Identity = 75/185 (40.54%), Postives = 100/185 (54.05%), Query Frame = 2
Query:   62 SDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKV--KVPTFLVPATQKVWMDVYTLPVP*SGGKTCSQIFEEAG-CDTPASPTCGACLGGPTDTYARMNEPMVCVSTTNRNFPGPMGHKEGHIYLASPYTAATSALTVYVPDPKEFL 607
            SD+ A +     FD+S LEP+V   + PD      E     +D+VY+GSCT G+ ED   AA++    GKK+   V   L PAT K++ D           +    IF EAG C T  +PTCGACLG      A   E  VC STTNRNF G MG K G ++L SP T+A +A+   + DP+++L
Sbjct:  259 SDDDAVYERVLDFDVSVLEPIVTFGYKPDQVKPISEIAGSPVDQVYLGSCTNGRLEDLRIAARIL--KGKKIAPSVRGILSPATPKIYKDAM--------AEGLIDIFMEAGFCVT--NPTCGACLGMSNGVLA---EGEVCASTTNRNFMGRMG-KGGMVHLMSPATSAATAIEGVIADPRKYL 427          
BLAST of FC876820 vs. ExPASy Swiss-Prot
Match: LEUC_WOLSU (3-isopropylmalate dehydratase large subunit OS=Wolinella succinogenes GN=leuC PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.986e-24
Identity = 71/201 (35.32%), Postives = 106/201 (52.74%), Query Frame = 2
Query:   11 TFKYLEDKTSLPYEPVY--SDEKASFLSEYRFDISKLEPLVAKPHSPDN-RALARECKD-VKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVP*SGGKTCSQIFEEAGCDTPASPTCGACLGGPTDTYARMNEPMVCVSTTNRNFPGPMGHKEGHIYLASPYTAATSALTVYVPDPKE 601
            T ++L  + SL  EP Y  +D  A +      D+ KLEP++A P  P N +++++  KD +KID+ +IGSCT G+  D   AA++         V   + P TQ+++ D +         +       EAG    ++PTCGACLGG       + +   CVSTTNRNF G MG +   +YLA+   AA SAL   + DP++
Sbjct:  233 TKEFLASRKSLRAEPKYYQADADALYEQTIEIDVEKLEPVIAYPFLPSNGKSISQAVKDDLKIDQAFIGSCTNGRLSDLRIAAQILKGKRVHPDVRLIITPGTQQIYKDAHQ--------EGLIDTLLEAGA-LISNPTCGACLGGYMGI---LGDNERCVSTTNRNFVGRMGARSSEVYLANSAVAAASALKGKITDPRK 421          
BLAST of FC876820 vs. ExPASy Swiss-Prot
Match: LEUC_SULNB (3-isopropylmalate dehydratase large subunit OS=Sulfurovum sp. (strain NBC37-1) GN=leuC PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 3.900e-24
Identity = 72/185 (38.92%), Postives = 98/185 (52.97%), Query Frame = 2
Query:   59 YSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALAREC--KDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLV--PATQKVWMDVYTLPVP*SGGKTCSQIFEEAGCDTPASPTCGACLGGPTDTYARMNEPMVCVSTTNRNFPGPMGHKEGHIYLASPYTAATSALTVYVPDPKE 601
            YSDE A++      D+  L P++A P  P N     +    D+KID+V IGSCT G+ ED   AA++    GK+V   T ++  PATQK+ M            +    I  EAG    ++PTCGACLGG       + +   CV+TTNRNF G MG +   IYLA+   AA SA+   + DP+E
Sbjct:  255 YSDEDATYCQVVTIDVENLSPVIAYPFLPSNGKPVEQAVKDDLKIDQVMIGSCTNGRIEDLRIAAEIM--KGKRVAKHTRMIVTPATQKILMQAQH--------EGLMDILIEAGA-VVSNPTCGACLGGYMGI---LGDGERCVATTNRNFVGRMGARTSEIYLANSAVAAASAIAGKIVDPRE 425          
BLAST of FC876820 vs. ExPASy Swiss-Prot
Match: LEUC_DESVM (3-isopropylmalate dehydratase large subunit OS=Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637) GN=leuC PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 5.094e-24
Identity = 71/183 (38.80%), Postives = 96/183 (52.46%), Query Frame = 2
Query:   53 PVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVK--VPTFLVPATQKVWMDVYTLPVP*SGGKTCSQIFEEAGCDTPASPTCGACLGGPTDTYARMNEPMVCVSTTNRNFPGPMGHKEGHIYLASPYTAATSALTVYVPDP 595
            P+ +D  A++  E  FD+S +EPLVA PH P+N     E + V +D+V IGSCT G+  D   AA+V    G+KV   V   ++PAT  VW +           +   + F E+GC      TCG CLGG     A   +    ++TTNRNF G MG  E  +YLASP  AA SA+   +  P
Sbjct:  247 PLSADPGATYERELTFDVSGMEPLVACPHLPENVKPVGEVRGVTLDQVVIGSCTNGRISDMREAAEVL--KGRKVAKGVRCIVLPATPGVWKEALK--------EGLIETFMESGC-IVGPATCGPCLGGHMGILA---DGERAIATTNRNFRGRMGSLESEVYLASPAVAAASAVAGIIAHP 415          
BLAST of FC876820 vs. ExPASy Swiss-Prot
Match: LEUC_CAMC1 (3-isopropylmalate dehydratase large subunit OS=Campylobacter concisus (strain 13826) GN=leuC PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 6.653e-24
Identity = 77/205 (37.56%), Postives = 107/205 (52.20%), Query Frame = 2
Query:    5 EATFKYLEDKTSLPYEP--VYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALAREC--KDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLV--PATQKVWMDVYTLPVP*SGGKTCSQIFEEAGCDTPASPTCGACLGGPTDTYARMNEPMVCVSTTNRNFPGPMGHKEGHIYLASPYTAATSALTVYVPDPKE 601
            E T ++L+DK +L  +P   YSDE A +      D++ L+P++A P  P N    R+    D+ ID+ +IGSCT G+  D   AA++    GKKV   T L+  PATQK+              +    IF EAG    ++PTCGACLGG             C+STTNRNF G MG +   IYLA+    A SA+   + DP++
Sbjct:  231 EITKEFLKDK-NLRDKPKFFYSDEGAKYDKILEIDVTNLDPVIAYPFLPSNGKSVRQAVRDDLAIDQAFIGSCTNGRLSDLRIAAQIL--KGKKVARKTRLIITPATQKIARAAEK--------EGLIDIFIEAGA-VVSNPTCGACLGGYMGILGANER---CISTTNRNFVGRMGDRTSEIYLANSAVVAASAIAGKIADPRD 420          
BLAST of FC876820 vs. ExPASy Swiss-Prot
Match: LEUC_GEOBB (3-isopropylmalate dehydratase large subunit OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) GN=leuC PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 8.689e-24
Identity = 74/185 (40.00%), Postives = 98/185 (52.97%), Query Frame = 2
Query:   62 SDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKV--KVPTFLVPATQKVWMDVYTLPVP*SGGKTCSQIFEEAG-CDTPASPTCGACLGGPTDTYARMNEPMVCVSTTNRNFPGPMGHKEGHIYLASPYTAATSALTVYVPDPKEFL 607
            SD  A++      D+S L PL    + PD      E    ++D+VY+GSCT G+ ED   AA++    GKK+   V   L PAT +++ D           +   QIF +AG C T  +PTCGACLG      A   E  VC STTNRNF G MG K G ++L SP TAA SA+   + DP+ +L
Sbjct:  259 SDADAAYEQVIDLDLSDLAPLCTFGYKPDQVKSVTEMAGTQVDQVYLGSCTNGRLEDLRVAAQIL--KGKKIASHVRAILSPATPQIYKDAV--------AEGLIQIFMDAGFCVT--NPTCGACLGMSNGVLA---EGEVCASTTNRNFMGRMG-KGGMVHLLSPATAAASAIEGKIADPRNYL 427          
BLAST of FC876820 vs. ExPASy Swiss-Prot
Match: LEUC2_DEIRA (3-isopropylmalate dehydratase large subunit 2 OS=Deinococcus radiodurans GN=leuC2 PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.135e-23
Identity = 70/210 (33.33%), Postives = 105/210 (50.00%), Query Frame = 2
Query:    5 EATFKYLEDKTSLP--YEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVK--VPTFLVPATQKVWMDVYTLPVP*SGGKTCSQIFEEAGCDTPASPTCGACLG------GPTDTYARMNEPMVCVSTTNRNFPGPMGHKEGHIYLASPYTAATSALTVYVPDPKEF 604
            + T  Y++ +   P  Y    SD  A +      D +++EP VA PH P N  +A   + +++   Y+GSCT G+  D    A++    G+KV   V   +VPATQ +W          +  +   +IF +AG    + P+CGACLG      GP D         +C+S++NRNF G MG     IYLASP T A SA+  ++ DP+ +
Sbjct:  232 DTTRAYMQQRGVSPEQYTEYQSDPDAKYKVVVEIDAAQVEPTVAYPHIPSNGRVAGSDR-IRVTHAYVGSCTNGRITDLRDVARIL--KGRKVAQDVQMIVVPATQAIWKQ--------AAQEGLLEIFVDAGASV-SYPSCGACLGMHSGVLGPDD---------ICISSSNRNFVGRMGDPSAQIYLASPATVAASAVEGFIADPRRY 420          
BLAST of FC876820 vs. ExPASy Swiss-Prot
Match: HACA_METJA (Homoaconitase large subunit OS=Methanocaldococcus jannaschii GN=hacA PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.135e-23
Identity = 70/203 (34.48%), Postives = 102/203 (50.25%), Query Frame = 2
Query:    5 EATFKYLEDKTSLPYEPV---------YSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVP*SGGKTCSQIFEEAGCDTPASPTCGACLGGPTDTYARMNEPMVCVSTTNRNFPGPMGHKEGHIYLASPYTAATSALTVYV 586
            E T+ YL+ +  L  E +          + ++A++  E   DI+ +E  VA PH PDN     + +  +I++V+IGSCT G+  D   AAK          V   ++PA++KV++            +    IF +AG     +P CG CLG      A   E  +C+STTNRNF G MGH   +IYLASP  AA SA+  Y+
Sbjct:  225 EITYDYLKKERGLSDEDIAKLKKERITVNRDEANYYKEIEIDITDMEEQVAVPHHPDNVKPISDVEGTEINQVFIGSCTNGRLSDLREAAKYLKGREVHKDVKLIVIPASKKVFLQALK--------EGIIDIFVKAGA-MICTPGCGPCLGAHQGVLA---EGEICLSTTNRNFKGRMGHINSYIYLASPKIAAISAVKGYI 415          
BLAST of FC876820 vs. ExPASy Swiss-Prot
Match: LEUC_DESVV (3-isopropylmalate dehydratase large subunit OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=leuC PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.482e-23
Identity = 70/180 (38.89%), Postives = 92/180 (51.11%), Query Frame = 2
Query:   62 SDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVK--VPTFLVPATQKVWMDVYTLPVP*SGGKTCSQIFEEAGCDTPASPTCGACLGGPTDTYARMNEPMVCVSTTNRNFPGPMGHKEGHIYLASPYTAATSALTVYVPDP 595
            +D  A +  E  FD++ + P+VA PH PDN     E KDV + +V IGSCT G+  D   AA V    G+KV   V   ++PAT  +W             +   + F EAGC      TCG CLGG     A   +    ++TTNRNF G MG  E  +YL+ P TAA SA+T  + DP
Sbjct:  251 ADAGAVYERELSFDVTGMTPVVACPHLPDNVKPVSEVKDVTVQQVVIGSCTNGRIGDLREAAAVL--RGRKVSRDVRCIVLPATPGIWRQALR--------EGLIETFMEAGC-IVGPATCGPCLGGHMGILA---DGERAIATTNRNFKGRMGSLESEVYLSGPATAAASAVTGVITDP 416          
The following BLAST results are available for this feature:
BLAST of FC876820 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 284
Match NameE-valueIdentityDescription
LEUC_GEOUR2.287e-2441.403-isopropylmalate dehydratase large subunit OS=Geo... [more]
LEUC_GEOMG2.287e-2440.543-isopropylmalate dehydratase large subunit OS=Geo... [more]
LEUC_WOLSU2.986e-2435.323-isopropylmalate dehydratase large subunit OS=Wol... [more]
LEUC_SULNB3.900e-2438.923-isopropylmalate dehydratase large subunit OS=Sul... [more]
LEUC_DESVM5.094e-2438.803-isopropylmalate dehydratase large subunit OS=Des... [more]
LEUC_CAMC16.653e-2437.563-isopropylmalate dehydratase large subunit OS=Cam... [more]
LEUC_GEOBB8.689e-2440.003-isopropylmalate dehydratase large subunit OS=Geo... [more]
LEUC2_DEIRA1.135e-2333.333-isopropylmalate dehydratase large subunit 2 OS=D... [more]
HACA_METJA1.135e-2334.48Homoaconitase large subunit OS=Methanocaldococcus ... [more]
LEUC_DESVV1.482e-2338.893-isopropylmalate dehydratase large subunit OS=Des... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN1CC08RM1 EHR Citrus clementina cDNA clone KN0AAN1CC08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876820 ID=FC876820; Name=FC876820; organism=Citrus clementina; type=EST; length=607bp
GCACGAGGCAACATTTAAATATCTTGAGGATAAGACATCGTTGCCCTATG
AACCAGTTTATAGTGATGAGAAAGCAAGTTTCCTGTCCGAATACAGATTT
GATATCTCGAAGCTGGAGCCACTGGTGGCAAAGCCTCATTCTCCTGACAA
TCGGGCTTTAGCAAGAGAGTGCAAAGATGTAAAAATTGACAGAGTATACA
TTGGATCTTGCACTGGTGGAAAAACAGAAGACTTTCTTGCTGCAGCGAAA
GTCTTCTTAGCTTCAGGCAAAAAGGTCAAAGTTCCAACATTTCTTGTCCC
TGCTACCCAAAAGGTATGGATGGACGTATACACTCTTCCAGTACCATGAT
CTGGTGGCAAGACTTGCTCTCAGATATTTGAAGAAGCTGGTTGCGACACA
CCTGCGAGTCCTACTTGCGGTGCTTGTTTGGGTGGCCCTACAGACACTTA
TGCACGCATGAATGAACCTATGGTCTGTGTCTCCACGACAAATAGGAACT
TCCCTGGACCGATGGGACACAAAGAAGGCCATATATATCTTGCTTCTCCA
TACACAGCTGCAACATCTGCTTTGACTGTTTATGTCCCTGATCCTAAGGA
GTTCTTG
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