FC876820
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC876820 vs. ExPASy Swiss-Prot
Match: LEUC_PYRKO (3-isopropylmalate dehydratase large subunit OS=Pyrococcus kodakaraensis GN=leuC PE=3 SV=1) HSP 1 Score: 102.449 bits (254), Expect = 1.812e-21 Identity = 65/173 (37.57%), Postives = 91/173 (52.60%), Query Frame = 2 Query: 80 FLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVP*SGGKTCSQIFEEAGCDTPASPTCGACLGGPTDTYARMNEPMVCVSTTNRNFPGPMGHKEGHIYLASPYTAATSALTVYVPDPK 598 ++ E D+S L P+VAKPH P N E + KID+V+IGSCT G+ E AA++ +G++V V T + PA+ V+ + + +++ +AG P CG CLG + V +STTNRNF G MG IYLASP TAA SAL + P+ Sbjct: 219 YVLELGIDLSSLPPMVAKPHHPSNGVPVEEVEGTKIDQVFIGSCTNGRFEQIERAAEIL--AGEEVAVRTIIGPASANVYRRMIETGI--------AKVLIDAGA-VILPPGCGPCLGRHMGV---AGDGDVILSTTNRNFRGRMGSPNSEIYLASPVTAALSALYGEITTPE 377
BLAST of FC876820 vs. ExPASy Swiss-Prot
Match: LEUC2_PYRFU (3-isopropylmalate dehydratase large subunit 2 OS=Pyrococcus furiosus GN=leuC2 PE=3 SV=1) HSP 1 Score: 102.449 bits (254), Expect = 1.812e-21 Identity = 63/173 (36.42%), Postives = 91/173 (52.60%), Query Frame = 2 Query: 80 FLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVP*SGGKTCSQIFEEAGCDTPASPTCGACLGGPTDTYARMNEPMVCVSTTNRNFPGPMGHKEGHIYLASPYTAATSALTVYVPDPK 598 ++ E +++ L PLVAKPH+P N E + KID+V+IGSCT G+ E AA++ G+KV V T + PA+ V+ + V ++ E P P CG CLG + + + +STTNRNF G MG IYL++P TAA SAL + +P+ Sbjct: 219 YVKELEIELNSLNPLVAKPHNPANVVPVEEVEGTKIDQVFIGSCTNGRFEQISKAAEIL--EGEKVAVRTIVGPASMNVYKRMIEEGV-------ARKLIEAGAVILP--PGCGPCLGRHMGV---VGDGEIVLSTTNRNFRGRMGSPNAQIYLSNPITAAVSALYGEITNPE 377
BLAST of FC876820 vs. ExPASy Swiss-Prot
Match: LEUC1_DEIRA (3-isopropylmalate dehydratase large subunit 1 OS=Deinococcus radiodurans GN=leuC1 PE=3 SV=1) HSP 1 Score: 102.449 bits (254), Expect = 1.812e-21 Identity = 68/184 (36.96%), Postives = 98/184 (53.26%), Query Frame = 2 Query: 56 VYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPT--FLVPATQKVWMDVYTLPVP*SGGKTCSQIFEEAGCDTPASPTCGACLGGPTDTYARMNEPMVCVSTTNRNFPGPMGHKEGHIYLASPYTAATSALTVYVPDPKE 601 VY DE A++ E D+S L P ++ P DN E + +K+D+V+IG+CT G+ ED AAA+V G++V T ++PA+ +V + G + + AG +P CG C+G A VCVST+NRNF G MG K+ HIYLASP AA +A+ V P++ Sbjct: 257 VYPDEGAAYAREVEIDLSALHPRMSAPSEVDNVHDVAELRGLKVDQVFIGTCTNGRIEDLHAAAEVL--RGRRVDPTTRLLVIPASSQVMEEAL------QDGTLLT--LQRAGA-VLGTPGCGPCMGRHQGVLA---PGEVCVSTSNRNFIGRMGDKDAHIYLASPAVAAATAVMGRVALPED 426
BLAST of FC876820 vs. ExPASy Swiss-Prot
Match: LEUC_PYRHO (3-isopropylmalate dehydratase large subunit OS=Pyrococcus horikoshii GN=leuC PE=3 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 2.366e-21 Identity = 66/173 (38.15%), Postives = 91/173 (52.60%), Query Frame = 2 Query: 77 SFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVP*SGGKTCSQIFEEAGCDTPASPTCGACLGGPTDTYARMNEPMVCVSTTNRNFPGPMGHKEGHIYLASPYTAATSALTVYVPDP 595 +++ E F++S L P+VAKP SP N + + KID+V+IGSCT G+ E AA++ G++V V T + PA+ V+ + + I +AG T P CG CLG + + V +STTNRNF G MG IYLASP TAA SAL + P Sbjct: 218 NYIKEISFELSSLGPMVAKPFSPANGVEVEKVEGTKIDQVFIGSCTNGRFEHIKRAAEIL--KGEEVAVRTIIGPASVNVYKRMVR--------EGIVDILLDAGA-TILPPGCGPCLGRHMGV---LGDKEVVLSTTNRNFRGRMGSPTAEIYLASPLTAAVSALYGEITSP 376
BLAST of FC876820 vs. ExPASy Swiss-Prot
Match: LEUC_DESDA (3-isopropylmalate dehydratase large subunit OS=Desulfovibrio desulfuricans (strain ATCC 27774 / DSM 6949) GN=leuC PE=3 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 2.366e-21 Identity = 69/186 (37.10%), Postives = 93/186 (50.00%), Query Frame = 2 Query: 50 EPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVK--VPTFLVPATQKVWMDVYTLPVP*SGGKTCSQIFEEAGCDTPASPTCGACLGGPTDTYARMNEPMVCVSTTNRNFPGPMGHKEGHIYLASPYTAATSALTVYVPDPKE 601 E + +D A + +++ EP+VA PH P N E +D I +V IGSCT G+ D AA+V G+KV V ++P+T VW + ++F EAGC S TCG CLGG + + V+TTNRNF G MG +YLASP AA SA+T YV P + Sbjct: 248 ENMAADSGAVYERVVDMNVTGKEPVVACPHLPSNVKPVSEVRDTAIQQVVIGSCTNGRISDMRDAAEVL--RGRKVDKGVRCIVLPSTPTVWKQCLR--------EGLIEVFMEAGCIVGPS-TCGPCLGGHMGI---LGDGERAVATTNRNFRGRMGSLSSEVYLASPLVAAASAVTGYVAGPDQ 419
BLAST of FC876820 vs. ExPASy Swiss-Prot
Match: HACA_THET2 (Homoaconitase large subunit OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=hacA PE=1 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 4.036e-21 Identity = 69/193 (35.75%), Postives = 93/193 (48.19%), Query Frame = 2 Query: 56 VYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVP*SGGKTCSQIFEEAGCD-----------TPASPTCGACLGGPTDTYARMNEPMVCVSTTNRNFPGPMGHKEGHIYLASPYTAATSALTVYVPDPKE 601 +Y D A + E D+S L P V+ P DN + K ++D+V+IG+CT G+ ED AAA+V G+KV W+ + +P SQ+ EEA D T +P CG C+G A VCVST+NRNF G MG + IYLASP AA SA+ Y+ P+E Sbjct: 241 LYPDPDARYAKEVEIDLSALTPRVSVPFYVDNVHEVAQVKGKRVDQVFIGTCTNGRIEDLRAAAEVL--RGRKV-----------APWVRLLVVP-------ASSQVLEEAARDGTLLTLLEAGATIGTPGCGPCMGRHMGVLA---PGEVCVSTSNRNFRGRMGAPDAEIYLASPRVAAASAVAGYLTTPEE 410
BLAST of FC876820 vs. ExPASy Swiss-Prot
Match: LEUC_DESDG (3-isopropylmalate dehydratase large subunit OS=Desulfovibrio desulfuricans (strain G20) GN=leuC PE=3 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 6.885e-21 Identity = 62/183 (33.88%), Postives = 88/183 (48.09%), Query Frame = 2 Query: 50 EPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVP*SGGKTCSQIFEEAGCDTPASPTCGACLGGPTDTYARMNEPMVCVSTTNRNFPGPMGHKEGHIYLASPYTAATSALTVYVPDPK 598 E + +D+ A + FD+S L P +A PH P+N E + V+I + IGSCT G+ D AA V V ++PAT +W + + F +AGC TCG CLGG A + ++TTNRNF G MG E +YL++P AA SA+ + DP+ Sbjct: 246 EKLSADQDAVYERSLSFDVSDLAPQIACPHLPENVRPVTEVQGVQIHQAVIGSCTNGRISDLREAAAVLRGRKVHKSVRCIVLPATPGIWKQALR--------EGLIETFMDAGC-IVGPATCGPCLGGHMGILA---DGERAIATTNRNFRGRMGSLESEVYLSNPSVAAASAVAGEIADPR 416
BLAST of FC876820 vs. ExPASy Swiss-Prot
Match: LEUC2_METMA (3-isopropylmalate dehydratase large subunit 2 OS=Methanosarcina mazei GN=leuC2 PE=3 SV=2) HSP 1 Score: 100.523 bits (249), Expect = 6.885e-21 Identity = 66/201 (32.84%), Postives = 102/201 (50.75%), Query Frame = 2 Query: 5 EATFKYLEDKT-SLPYEPVY-SDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVP*SGGKTCSQIFEEAGCDTPASPTCGACLGGPTDTYARMNEPMVCVSTTNRNFPGPMGHKEGHIYLASPYTAATSALTVYVPDPKE 601 E T YL+++ +P + SDE A +L +D+S LEP VA PH+ DN E + K+D++++GSCT G+ ED A + + +VPA++ +M + + AG A P CG C+GG ++ + V ++T+NRNF G G E +YL+SP TA SALT + DP++ Sbjct: 231 EVTEAYLKERIPGFKLDPYWKSDEGAKYLDIRYYDVSDLEPQVACPHNVDNVKPVSEVEGTKLDQIFMGSCTNGRFEDIKIMADIMGDEPVAKNLRLLVVPASKTEYMKLLKAGY--------IEKLVNAGAIVEA-PCCGPCMGG---SFGLLGPGEVGLATSNRNFKGREGSAESFVYLSSPATAGASALTGEITDPRK 419
BLAST of FC876820 vs. ExPASy Swiss-Prot
Match: LEUC1_METTH (3-isopropylmalate dehydratase large subunit 1 OS=Methanobacterium thermoautotrophicum GN=leuC1 PE=3 SV=1) HSP 1 Score: 99.3673 bits (246), Expect = 1.534e-20 Identity = 64/197 (32.49%), Postives = 95/197 (48.22%), Query Frame = 2 Query: 5 EATFKYLEDKTSLPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVP*SGGKTCSQIFEEAGCDTPASPTCGACLGGPTDTYARMNEPMVCVSTTNRNFPGPMGHKEGHIYLASPYTAATSALTVYVPDP 595 E T Y+ ++ P+ +D A LS D+S LEP VA PH+ DN E + +ID+V++GSCT G+ D AA + V ++PA+++V+ + +IF +AG +P CG CLGG + V +ST+NRNF G G E +YL+S AA SA+ + P Sbjct: 231 EKTLNYVRRRSGKPWRVFKTDPDAPSLSVMEVDVSDLEPQVACPHNVDNVKPVTEVEGTEIDQVFLGSCTNGRLSDLRDAAAILKNRKVSDSVRMLVIPASREVYRRAL--------DEGLIEIFVDAGA-LVCNPCCGPCLGGHV---GLVGPGEVSLSTSNRNFRGRQGSPEAEVYLSSAAVAAASAVKGSITHP 415
BLAST of FC876820 vs. ExPASy Swiss-Prot
Match: LEUC2_PYRAB (3-isopropylmalate dehydratase large subunit 2 OS=Pyrococcus abyssi GN=leuC2 PE=3 SV=1) HSP 1 Score: 98.5969 bits (244), Expect = 2.616e-20 Identity = 67/177 (37.85%), Postives = 92/177 (51.98%), Query Frame = 2 Query: 68 EKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVP*SGGKTCSQIFEEAGCDTPASPTCGACLGGPTDTYARMNEPMVCVSTTNRNFPGPMGHKEGHIYLASPYTAATSALTVYVPDPK 598 E + E ++ L P+VAKP SP N + + KID+V+IGSCT G+ E AA++ G++V V T + PA+ V+ + + +I +AG P CG CLG A NE V +STTNRNF G MG + IYLASP TAA SAL + +P+ Sbjct: 215 EGGGYSDEITIELDSLPPMVAKPFSPANGVSVEDVEGTKIDQVFIGSCTNGRFEQIKRAAEIL--DGEQVNVRTLVAPASINVYRRMIE--------EGLVRILIDAGV-VILPPGCGPCLGRHMGV-AGDNE--VILSTTNRNFRGRMGSPKAEIYLASPVTAAVSALYGEITNPE 377 The following BLAST results are available for this feature:
BLAST of FC876820 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 284
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Sequences
The
following sequences are available for this feature:
EST sequence >FC876820 ID=FC876820; Name=FC876820; organism=Citrus clementina; type=EST; length=607bpback to top |