FC876820

Overview
NameFC876820
Unique NameFC876820
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length607
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876820 vs. ExPASy Swiss-Prot
Match: LEUC_PYRKO (3-isopropylmalate dehydratase large subunit OS=Pyrococcus kodakaraensis GN=leuC PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.812e-21
Identity = 65/173 (37.57%), Postives = 91/173 (52.60%), Query Frame = 2
Query:   80 FLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVP*SGGKTCSQIFEEAGCDTPASPTCGACLGGPTDTYARMNEPMVCVSTTNRNFPGPMGHKEGHIYLASPYTAATSALTVYVPDPK 598
            ++ E   D+S L P+VAKPH P N     E +  KID+V+IGSCT G+ E    AA++   +G++V V T + PA+  V+  +    +        +++  +AG      P CG CLG          +  V +STTNRNF G MG     IYLASP TAA SAL   +  P+
Sbjct:  219 YVLELGIDLSSLPPMVAKPHHPSNGVPVEEVEGTKIDQVFIGSCTNGRFEQIERAAEIL--AGEEVAVRTIIGPASANVYRRMIETGI--------AKVLIDAGA-VILPPGCGPCLGRHMGV---AGDGDVILSTTNRNFRGRMGSPNSEIYLASPVTAALSALYGEITTPE 377          
BLAST of FC876820 vs. ExPASy Swiss-Prot
Match: LEUC2_PYRFU (3-isopropylmalate dehydratase large subunit 2 OS=Pyrococcus furiosus GN=leuC2 PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.812e-21
Identity = 63/173 (36.42%), Postives = 91/173 (52.60%), Query Frame = 2
Query:   80 FLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVP*SGGKTCSQIFEEAGCDTPASPTCGACLGGPTDTYARMNEPMVCVSTTNRNFPGPMGHKEGHIYLASPYTAATSALTVYVPDPK 598
            ++ E   +++ L PLVAKPH+P N     E +  KID+V+IGSCT G+ E    AA++    G+KV V T + PA+  V+  +    V         ++ E      P  P CG CLG        + +  + +STTNRNF G MG     IYL++P TAA SAL   + +P+
Sbjct:  219 YVKELEIELNSLNPLVAKPHNPANVVPVEEVEGTKIDQVFIGSCTNGRFEQISKAAEIL--EGEKVAVRTIVGPASMNVYKRMIEEGV-------ARKLIEAGAVILP--PGCGPCLGRHMGV---VGDGEIVLSTTNRNFRGRMGSPNAQIYLSNPITAAVSALYGEITNPE 377          
BLAST of FC876820 vs. ExPASy Swiss-Prot
Match: LEUC1_DEIRA (3-isopropylmalate dehydratase large subunit 1 OS=Deinococcus radiodurans GN=leuC1 PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.812e-21
Identity = 68/184 (36.96%), Postives = 98/184 (53.26%), Query Frame = 2
Query:   56 VYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPT--FLVPATQKVWMDVYTLPVP*SGGKTCSQIFEEAGCDTPASPTCGACLGGPTDTYARMNEPMVCVSTTNRNFPGPMGHKEGHIYLASPYTAATSALTVYVPDPKE 601
            VY DE A++  E   D+S L P ++ P   DN     E + +K+D+V+IG+CT G+ ED  AAA+V    G++V   T   ++PA+ +V  +          G   +   + AG     +P CG C+G      A      VCVST+NRNF G MG K+ HIYLASP  AA +A+   V  P++
Sbjct:  257 VYPDEGAAYAREVEIDLSALHPRMSAPSEVDNVHDVAELRGLKVDQVFIGTCTNGRIEDLHAAAEVL--RGRRVDPTTRLLVIPASSQVMEEAL------QDGTLLT--LQRAGA-VLGTPGCGPCMGRHQGVLA---PGEVCVSTSNRNFIGRMGDKDAHIYLASPAVAAATAVMGRVALPED 426          
BLAST of FC876820 vs. ExPASy Swiss-Prot
Match: LEUC_PYRHO (3-isopropylmalate dehydratase large subunit OS=Pyrococcus horikoshii GN=leuC PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.366e-21
Identity = 66/173 (38.15%), Postives = 91/173 (52.60%), Query Frame = 2
Query:   77 SFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVP*SGGKTCSQIFEEAGCDTPASPTCGACLGGPTDTYARMNEPMVCVSTTNRNFPGPMGHKEGHIYLASPYTAATSALTVYVPDP 595
            +++ E  F++S L P+VAKP SP N     + +  KID+V+IGSCT G+ E    AA++    G++V V T + PA+  V+  +          +    I  +AG  T   P CG CLG        + +  V +STTNRNF G MG     IYLASP TAA SAL   +  P
Sbjct:  218 NYIKEISFELSSLGPMVAKPFSPANGVEVEKVEGTKIDQVFIGSCTNGRFEHIKRAAEIL--KGEEVAVRTIIGPASVNVYKRMVR--------EGIVDILLDAGA-TILPPGCGPCLGRHMGV---LGDKEVVLSTTNRNFRGRMGSPTAEIYLASPLTAAVSALYGEITSP 376          
BLAST of FC876820 vs. ExPASy Swiss-Prot
Match: LEUC_DESDA (3-isopropylmalate dehydratase large subunit OS=Desulfovibrio desulfuricans (strain ATCC 27774 / DSM 6949) GN=leuC PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.366e-21
Identity = 69/186 (37.10%), Postives = 93/186 (50.00%), Query Frame = 2
Query:   50 EPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVK--VPTFLVPATQKVWMDVYTLPVP*SGGKTCSQIFEEAGCDTPASPTCGACLGGPTDTYARMNEPMVCVSTTNRNFPGPMGHKEGHIYLASPYTAATSALTVYVPDPKE 601
            E + +D  A +      +++  EP+VA PH P N     E +D  I +V IGSCT G+  D   AA+V    G+KV   V   ++P+T  VW             +   ++F EAGC    S TCG CLGG       + +    V+TTNRNF G MG     +YLASP  AA SA+T YV  P +
Sbjct:  248 ENMAADSGAVYERVVDMNVTGKEPVVACPHLPSNVKPVSEVRDTAIQQVVIGSCTNGRISDMRDAAEVL--RGRKVDKGVRCIVLPSTPTVWKQCLR--------EGLIEVFMEAGCIVGPS-TCGPCLGGHMGI---LGDGERAVATTNRNFRGRMGSLSSEVYLASPLVAAASAVTGYVAGPDQ 419          
BLAST of FC876820 vs. ExPASy Swiss-Prot
Match: HACA_THET2 (Homoaconitase large subunit OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=hacA PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.036e-21
Identity = 69/193 (35.75%), Postives = 93/193 (48.19%), Query Frame = 2
Query:   56 VYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVP*SGGKTCSQIFEEAGCD-----------TPASPTCGACLGGPTDTYARMNEPMVCVSTTNRNFPGPMGHKEGHIYLASPYTAATSALTVYVPDPKE 601
            +Y D  A +  E   D+S L P V+ P   DN     + K  ++D+V+IG+CT G+ ED  AAA+V    G+KV             W+ +  +P         SQ+ EEA  D           T  +P CG C+G      A      VCVST+NRNF G MG  +  IYLASP  AA SA+  Y+  P+E
Sbjct:  241 LYPDPDARYAKEVEIDLSALTPRVSVPFYVDNVHEVAQVKGKRVDQVFIGTCTNGRIEDLRAAAEVL--RGRKV-----------APWVRLLVVP-------ASSQVLEEAARDGTLLTLLEAGATIGTPGCGPCMGRHMGVLA---PGEVCVSTSNRNFRGRMGAPDAEIYLASPRVAAASAVAGYLTTPEE 410          
BLAST of FC876820 vs. ExPASy Swiss-Prot
Match: LEUC_DESDG (3-isopropylmalate dehydratase large subunit OS=Desulfovibrio desulfuricans (strain G20) GN=leuC PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 6.885e-21
Identity = 62/183 (33.88%), Postives = 88/183 (48.09%), Query Frame = 2
Query:   50 EPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVP*SGGKTCSQIFEEAGCDTPASPTCGACLGGPTDTYARMNEPMVCVSTTNRNFPGPMGHKEGHIYLASPYTAATSALTVYVPDPK 598
            E + +D+ A +     FD+S L P +A PH P+N     E + V+I +  IGSCT G+  D   AA V         V   ++PAT  +W             +   + F +AGC      TCG CLGG     A   +    ++TTNRNF G MG  E  +YL++P  AA SA+   + DP+
Sbjct:  246 EKLSADQDAVYERSLSFDVSDLAPQIACPHLPENVRPVTEVQGVQIHQAVIGSCTNGRISDLREAAAVLRGRKVHKSVRCIVLPATPGIWKQALR--------EGLIETFMDAGC-IVGPATCGPCLGGHMGILA---DGERAIATTNRNFRGRMGSLESEVYLSNPSVAAASAVAGEIADPR 416          
BLAST of FC876820 vs. ExPASy Swiss-Prot
Match: LEUC2_METMA (3-isopropylmalate dehydratase large subunit 2 OS=Methanosarcina mazei GN=leuC2 PE=3 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 6.885e-21
Identity = 66/201 (32.84%), Postives = 102/201 (50.75%), Query Frame = 2
Query:    5 EATFKYLEDKT-SLPYEPVY-SDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVP*SGGKTCSQIFEEAGCDTPASPTCGACLGGPTDTYARMNEPMVCVSTTNRNFPGPMGHKEGHIYLASPYTAATSALTVYVPDPKE 601
            E T  YL+++      +P + SDE A +L    +D+S LEP VA PH+ DN     E +  K+D++++GSCT G+ ED    A +         +   +VPA++  +M +              +    AG    A P CG C+GG   ++  +    V ++T+NRNF G  G  E  +YL+SP TA  SALT  + DP++
Sbjct:  231 EVTEAYLKERIPGFKLDPYWKSDEGAKYLDIRYYDVSDLEPQVACPHNVDNVKPVSEVEGTKLDQIFMGSCTNGRFEDIKIMADIMGDEPVAKNLRLLVVPASKTEYMKLLKAGY--------IEKLVNAGAIVEA-PCCGPCMGG---SFGLLGPGEVGLATSNRNFKGREGSAESFVYLSSPATAGASALTGEITDPRK 419          
BLAST of FC876820 vs. ExPASy Swiss-Prot
Match: LEUC1_METTH (3-isopropylmalate dehydratase large subunit 1 OS=Methanobacterium thermoautotrophicum GN=leuC1 PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.534e-20
Identity = 64/197 (32.49%), Postives = 95/197 (48.22%), Query Frame = 2
Query:    5 EATFKYLEDKTSLPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVP*SGGKTCSQIFEEAGCDTPASPTCGACLGGPTDTYARMNEPMVCVSTTNRNFPGPMGHKEGHIYLASPYTAATSALTVYVPDP 595
            E T  Y+  ++  P+    +D  A  LS    D+S LEP VA PH+ DN     E +  +ID+V++GSCT G+  D   AA +         V   ++PA+++V+             +   +IF +AG     +P CG CLGG       +    V +ST+NRNF G  G  E  +YL+S   AA SA+   +  P
Sbjct:  231 EKTLNYVRRRSGKPWRVFKTDPDAPSLSVMEVDVSDLEPQVACPHNVDNVKPVTEVEGTEIDQVFLGSCTNGRLSDLRDAAAILKNRKVSDSVRMLVIPASREVYRRAL--------DEGLIEIFVDAGA-LVCNPCCGPCLGGHV---GLVGPGEVSLSTSNRNFRGRQGSPEAEVYLSSAAVAAASAVKGSITHP 415          
BLAST of FC876820 vs. ExPASy Swiss-Prot
Match: LEUC2_PYRAB (3-isopropylmalate dehydratase large subunit 2 OS=Pyrococcus abyssi GN=leuC2 PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.616e-20
Identity = 67/177 (37.85%), Postives = 92/177 (51.98%), Query Frame = 2
Query:   68 EKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVP*SGGKTCSQIFEEAGCDTPASPTCGACLGGPTDTYARMNEPMVCVSTTNRNFPGPMGHKEGHIYLASPYTAATSALTVYVPDPK 598
            E   +  E   ++  L P+VAKP SP N     + +  KID+V+IGSCT G+ E    AA++    G++V V T + PA+  V+  +          +   +I  +AG      P CG CLG      A  NE  V +STTNRNF G MG  +  IYLASP TAA SAL   + +P+
Sbjct:  215 EGGGYSDEITIELDSLPPMVAKPFSPANGVSVEDVEGTKIDQVFIGSCTNGRFEQIKRAAEIL--DGEQVNVRTLVAPASINVYRRMIE--------EGLVRILIDAGV-VILPPGCGPCLGRHMGV-AGDNE--VILSTTNRNFRGRMGSPKAEIYLASPVTAAVSALYGEITNPE 377          
The following BLAST results are available for this feature:
BLAST of FC876820 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 284
Match NameE-valueIdentityDescription
LEUC_PYRKO1.812e-2137.573-isopropylmalate dehydratase large subunit OS=Pyr... [more]
LEUC2_PYRFU1.812e-2136.423-isopropylmalate dehydratase large subunit 2 OS=P... [more]
LEUC1_DEIRA1.812e-2136.963-isopropylmalate dehydratase large subunit 1 OS=D... [more]
LEUC_PYRHO2.366e-2138.153-isopropylmalate dehydratase large subunit OS=Pyr... [more]
LEUC_DESDA2.366e-2137.103-isopropylmalate dehydratase large subunit OS=Des... [more]
HACA_THET24.036e-2135.75Homoaconitase large subunit OS=Thermus thermophilu... [more]
LEUC_DESDG6.885e-2133.883-isopropylmalate dehydratase large subunit OS=Des... [more]
LEUC2_METMA6.885e-2132.843-isopropylmalate dehydratase large subunit 2 OS=M... [more]
LEUC1_METTH1.534e-2032.493-isopropylmalate dehydratase large subunit 1 OS=M... [more]
LEUC2_PYRAB2.616e-2037.853-isopropylmalate dehydratase large subunit 2 OS=P... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN1CC08RM1 EHR Citrus clementina cDNA clone KN0AAN1CC08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876820 ID=FC876820; Name=FC876820; organism=Citrus clementina; type=EST; length=607bp
GCACGAGGCAACATTTAAATATCTTGAGGATAAGACATCGTTGCCCTATG
AACCAGTTTATAGTGATGAGAAAGCAAGTTTCCTGTCCGAATACAGATTT
GATATCTCGAAGCTGGAGCCACTGGTGGCAAAGCCTCATTCTCCTGACAA
TCGGGCTTTAGCAAGAGAGTGCAAAGATGTAAAAATTGACAGAGTATACA
TTGGATCTTGCACTGGTGGAAAAACAGAAGACTTTCTTGCTGCAGCGAAA
GTCTTCTTAGCTTCAGGCAAAAAGGTCAAAGTTCCAACATTTCTTGTCCC
TGCTACCCAAAAGGTATGGATGGACGTATACACTCTTCCAGTACCATGAT
CTGGTGGCAAGACTTGCTCTCAGATATTTGAAGAAGCTGGTTGCGACACA
CCTGCGAGTCCTACTTGCGGTGCTTGTTTGGGTGGCCCTACAGACACTTA
TGCACGCATGAATGAACCTATGGTCTGTGTCTCCACGACAAATAGGAACT
TCCCTGGACCGATGGGACACAAAGAAGGCCATATATATCTTGCTTCTCCA
TACACAGCTGCAACATCTGCTTTGACTGTTTATGTCCCTGATCCTAAGGA
GTTCTTG
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