FC876821

Overview
NameFC876821
Unique NameFC876821
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length248
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876821 vs. ExPASy Swiss-Prot
Match: G3PC_CHLRE (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Chlamydomonas reinhardtii GN=GAPC PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 5.300e-25
Identity = 55/77 (71.43%), Postives = 64/77 (83.12%), Query Frame = 1
Query:   10 TATHKTVDGPSMNDWRGGRAASFDLIPSSTGAAKAVGKVLPALAGTLTGLSFPVPTGDVSMVNLPVRLEKETTYEEL 240
            TAT KTVDGPS  DWRGGRA + ++IPSSTGAAKAVGKVLP L G LTG++F VPT DVS+V+L V LEK TTYE++
Sbjct:  184 TATQKTVDGPSKKDWRGGRAVNGNIIPSSTGAAKAVGKVLPELKGKLTGMAFRVPTNDVSVVDLTVTLEKATTYEDI 260          
BLAST of FC876821 vs. ExPASy Swiss-Prot
Match: G3P1_SHIFL (Glyceraldehyde-3-phosphate dehydrogenase A OS=Shigella flexneri GN=gapA PE=3 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 5.300e-25
Identity = 56/78 (71.79%), Postives = 65/78 (83.33%), Query Frame = 1
Query:   10 TATHKTVDGPSMNDWRGGRAASFDLIPSSTGAAKAVGKVLPALAGTLTGLSFPVPTGDVSMVNLPVRLEKETTYEELK 243
            TAT KTVDGPS  DWRGGR AS ++IPSSTGAAKAVGKVLP L G LTG++F VPT +VS+V+L VRLEK  TYE++K
Sbjct:  180 TATQKTVDGPSHKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNVSVVDLTVRLEKAATYEQIK 257          
BLAST of FC876821 vs. ExPASy Swiss-Prot
Match: G3P1_SALTY (Glyceraldehyde-3-phosphate dehydrogenase OS=Salmonella typhimurium GN=gapA PE=3 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 5.300e-25
Identity = 56/78 (71.79%), Postives = 65/78 (83.33%), Query Frame = 1
Query:   10 TATHKTVDGPSMNDWRGGRAASFDLIPSSTGAAKAVGKVLPALAGTLTGLSFPVPTGDVSMVNLPVRLEKETTYEELK 243
            TAT KTVDGPS  DWRGGR AS ++IPSSTGAAKAVGKVLP L G LTG++F VPT +VS+V+L VRLEK  TYE++K
Sbjct:  180 TATQKTVDGPSHKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNVSVVDLTVRLEKAATYEQIK 257          
BLAST of FC876821 vs. ExPASy Swiss-Prot
Match: G3P1_SALTI (Glyceraldehyde-3-phosphate dehydrogenase OS=Salmonella typhi GN=gapA PE=3 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 5.300e-25
Identity = 56/78 (71.79%), Postives = 65/78 (83.33%), Query Frame = 1
Query:   10 TATHKTVDGPSMNDWRGGRAASFDLIPSSTGAAKAVGKVLPALAGTLTGLSFPVPTGDVSMVNLPVRLEKETTYEELK 243
            TAT KTVDGPS  DWRGGR AS ++IPSSTGAAKAVGKVLP L G LTG++F VPT +VS+V+L VRLEK  TYE++K
Sbjct:  180 TATQKTVDGPSHKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNVSVVDLTVRLEKAATYEQIK 257          
BLAST of FC876821 vs. ExPASy Swiss-Prot
Match: G3P1_ESCFE (Glyceraldehyde-3-phosphate dehydrogenase A (Fragment) OS=Escherichia fergusonii GN=gapA PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 5.300e-25
Identity = 56/78 (71.79%), Postives = 65/78 (83.33%), Query Frame = 1
Query:   10 TATHKTVDGPSMNDWRGGRAASFDLIPSSTGAAKAVGKVLPALAGTLTGLSFPVPTGDVSMVNLPVRLEKETTYEELK 243
            TAT KTVDGPS  DWRGGR AS ++IPSSTGAAKAVGKVLP L G LTG++F VPT +VS+V+L VRLEK  TYE++K
Sbjct:  165 TATQKTVDGPSHKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNVSVVDLTVRLEKPATYEQIK 242          
BLAST of FC876821 vs. ExPASy Swiss-Prot
Match: G3P1_ESCF3 (Glyceraldehyde-3-phosphate dehydrogenase A OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=gapA PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 5.300e-25
Identity = 56/78 (71.79%), Postives = 65/78 (83.33%), Query Frame = 1
Query:   10 TATHKTVDGPSMNDWRGGRAASFDLIPSSTGAAKAVGKVLPALAGTLTGLSFPVPTGDVSMVNLPVRLEKETTYEELK 243
            TAT KTVDGPS  DWRGGR AS ++IPSSTGAAKAVGKVLP L G LTG++F VPT +VS+V+L VRLEK  TYE++K
Sbjct:  180 TATQKTVDGPSHKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNVSVVDLTVRLEKPATYEQIK 257          
BLAST of FC876821 vs. ExPASy Swiss-Prot
Match: G3P1_ECOLI (Glyceraldehyde-3-phosphate dehydrogenase A OS=Escherichia coli (strain K12) GN=gapA PE=1 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 5.300e-25
Identity = 56/78 (71.79%), Postives = 65/78 (83.33%), Query Frame = 1
Query:   10 TATHKTVDGPSMNDWRGGRAASFDLIPSSTGAAKAVGKVLPALAGTLTGLSFPVPTGDVSMVNLPVRLEKETTYEELK 243
            TAT KTVDGPS  DWRGGR AS ++IPSSTGAAKAVGKVLP L G LTG++F VPT +VS+V+L VRLEK  TYE++K
Sbjct:  180 TATQKTVDGPSHKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNVSVVDLTVRLEKAATYEQIK 257          
BLAST of FC876821 vs. ExPASy Swiss-Prot
Match: G3P1_ECOL6 (Glyceraldehyde-3-phosphate dehydrogenase A OS=Escherichia coli O6 GN=gapA PE=3 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 5.300e-25
Identity = 56/78 (71.79%), Postives = 65/78 (83.33%), Query Frame = 1
Query:   10 TATHKTVDGPSMNDWRGGRAASFDLIPSSTGAAKAVGKVLPALAGTLTGLSFPVPTGDVSMVNLPVRLEKETTYEELK 243
            TAT KTVDGPS  DWRGGR AS ++IPSSTGAAKAVGKVLP L G LTG++F VPT +VS+V+L VRLEK  TYE++K
Sbjct:  180 TATQKTVDGPSHKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNVSVVDLTVRLEKAATYEQIK 257          
BLAST of FC876821 vs. ExPASy Swiss-Prot
Match: G3P1_ECO57 (Glyceraldehyde-3-phosphate dehydrogenase A OS=Escherichia coli O157:H7 GN=gapA PE=3 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 5.300e-25
Identity = 56/78 (71.79%), Postives = 65/78 (83.33%), Query Frame = 1
Query:   10 TATHKTVDGPSMNDWRGGRAASFDLIPSSTGAAKAVGKVLPALAGTLTGLSFPVPTGDVSMVNLPVRLEKETTYEELK 243
            TAT KTVDGPS  DWRGGR AS ++IPSSTGAAKAVGKVLP L G LTG++F VPT +VS+V+L VRLEK  TYE++K
Sbjct:  180 TATQKTVDGPSHKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNVSVVDLTVRLEKAATYEQIK 257          
BLAST of FC876821 vs. ExPASy Swiss-Prot
Match: G3P_CITFR (Glyceraldehyde-3-phosphate dehydrogenase (Fragment) OS=Citrobacter freundii GN=gap PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 6.923e-25
Identity = 56/78 (71.79%), Postives = 65/78 (83.33%), Query Frame = 1
Query:   10 TATHKTVDGPSMNDWRGGRAASFDLIPSSTGAAKAVGKVLPALAGTLTGLSFPVPTGDVSMVNLPVRLEKETTYEELK 243
            TAT KTVDGPS  DWRGGR AS ++IPSSTGAAKAVGKVLP L G LTG++F VPT +VS+V+L VRLEK  +YEE+K
Sbjct:  165 TATQKTVDGPSHKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNVSVVDLTVRLEKAASYEEIK 242          
The following BLAST results are available for this feature:
BLAST of FC876821 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 198
Match NameE-valueIdentityDescription
G3PC_CHLRE5.300e-2571.43Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P1_SHIFL5.300e-2571.79Glyceraldehyde-3-phosphate dehydrogenase A OS=Shig... [more]
G3P1_SALTY5.300e-2571.79Glyceraldehyde-3-phosphate dehydrogenase OS=Salmon... [more]
G3P1_SALTI5.300e-2571.79Glyceraldehyde-3-phosphate dehydrogenase OS=Salmon... [more]
G3P1_ESCFE5.300e-2571.79Glyceraldehyde-3-phosphate dehydrogenase A (Fragme... [more]
G3P1_ESCF35.300e-2571.79Glyceraldehyde-3-phosphate dehydrogenase A OS=Esch... [more]
G3P1_ECOLI5.300e-2571.79Glyceraldehyde-3-phosphate dehydrogenase A OS=Esch... [more]
G3P1_ECOL65.300e-2571.79Glyceraldehyde-3-phosphate dehydrogenase A OS=Esch... [more]
G3P1_ECO575.300e-2571.79Glyceraldehyde-3-phosphate dehydrogenase A OS=Esch... [more]
G3P_CITFR6.923e-2571.79Glyceraldehyde-3-phosphate dehydrogenase (Fragment... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN1CC09RM1 EHR Citrus clementina cDNA clone KN0AAN1CC09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876821 ID=FC876821; Name=FC876821; organism=Citrus clementina; type=EST; length=248bp
GCACGAGGCACTGCCACTCACAAGACTGTTGATGGACCATCAATGAACGA
CTGGAGAGGTGGCAGAGCTGCTTCCTTCGACCTCATTCCCAGCAGCACCG
GTGCTGCCAAGGCAGTTGGTAAGGTTTTGCCTGCCCTTGCTGGTACATTG
ACCGGACTGTCCTTCCCAGTTCCTACCGGTGATGTCTCAATGGTCAACCT
CCCTGTCCGACTTGAAAAGGAGACGACTTATGAGGAACTTAAAAATGC
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