FC876840

Overview
NameFC876840
Unique NameFC876840
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length767
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876840 vs. ExPASy Swiss-Prot
Match: CML43_ARATH (Probable calcium-binding protein CML43 OS=Arabidopsis thaliana GN=CML43 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.072e-12
Identity = 35/71 (49.30%), Postives = 51/71 (71.83%), Query Frame = 1
Query:  490 EVKDAFDVFDENKDGFIDALELQRVLCILGMKEGFQLENCKKMIKTFDENGDGRIDFKEFVKFMESSFVES 702
            ++++AF+VFDE+ DGFI A+ELQ+VL  LG+ E  ++E  +KMI + D N DGR+DF EF   M++  V S
Sbjct:  111 DLEEAFNVFDEDGDGFISAVELQKVLKKLGLPEAGEIEQVEKMIVSVDSNHDGRVDFFEFKNMMQTVVVPS 181          
BLAST of FC876840 vs. ExPASy Swiss-Prot
Match: CAST_SOLTU (Calcium-binding protein CAST OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.072e-12
Identity = 40/90 (44.44%), Postives = 58/90 (64.44%), Query Frame = 1
Query:  439 GSRELSRLFEEKEPSLEE--VKDAFDVFDENKDGFIDALELQRVLCILGMKEGFQLENCKKMIKTFDENGDGRIDFKEFVKFMESSFVES 702
            GS+   +L    +P+ +E  +K+AFDVFDEN DGFI A ELQ VL  LG+ EG +++  + MI + +++ DGR+DF EF   M +  V S
Sbjct:  110 GSKCEDKLGLNPDPAQDESDLKEAFDVFDENGDGFISAKELQVVLEKLGLPEGSEIDRVEMMISSVEQDHDGRVDFFEFKDMMRTVIVPS 199          
BLAST of FC876840 vs. ExPASy Swiss-Prot
Match: CML22_ORYSJ (Probable calcium-binding protein CML22 OS=Oryza sativa subsp. japonica GN=CML22 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.012e-12
Identity = 35/75 (46.67%), Postives = 49/75 (65.33%), Query Frame = 1
Query:  457 RLFEEKEPSLEEVKDAFDVFDENKDGFIDALELQRVLCILGMKEGFQLENCKKMIKTFDENGDGRIDFKEFVKFM 681
            R  EE+E    ++++AF VFD N DG+I   EL  VL  LG+K+G   E C++MI   D +GDGR+DF EF++ M
Sbjct:  167 RAKEEEEEEDGDMREAFRVFDANGDGYITVDELGAVLASLGLKQGRTAEECRRMIGQVDRDGDGRVDFHEFLQMM 241          
BLAST of FC876840 vs. ExPASy Swiss-Prot
Match: CML42_ARATH (Calcium-binding protein CML42 OS=Arabidopsis thaliana GN=CML42 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.240e-12
Identity = 36/71 (50.70%), Postives = 47/71 (66.20%), Query Frame = 1
Query:  490 EVKDAFDVFDENKDGFIDALELQRVLCILGMKEGFQLENCKKMIKTFDENGDGRIDFKEFVKFMESSFVES 702
            ++ +AF VFDEN DGFI A ELQ VL  LG+ EG ++E  +KMI + D N DGR+DF EF   M +  + S
Sbjct:  120 DLAEAFKVFDENGDGFISARELQTVLKKLGLPEGGEMERVEKMIVSVDRNQDGRVDFFEFKNMMRTVVIPS 190          
BLAST of FC876840 vs. ExPASy Swiss-Prot
Match: CML17_ORYSJ (Probable calcium-binding protein CML17 OS=Oryza sativa subsp. japonica GN=CML17 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.397e-11
Identity = 33/63 (52.38%), Postives = 43/63 (68.25%), Query Frame = 1
Query:  493 VKDAFDVFDENKDGFIDALELQRVLCILGMKEGFQLENCKKMIKTFDENGDGRIDFKEFVKFM 681
            +++AFDVFD N DGFI   EL  VL  LG+K+G   E+C +MI   D +GDGR+DF EF + M
Sbjct:   93 MREAFDVFDRNGDGFITVDELGAVLASLGIKQGRTAEDCGRMIGQVDRDGDGRVDFLEFKQMM 155          
The following BLAST results are available for this feature:
BLAST of FC876840 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
CML43_ARATH3.072e-1249.30Probable calcium-binding protein CML43 OS=Arabidop... [more]
CAST_SOLTU3.072e-1244.44Calcium-binding protein CAST OS=Solanum tuberosum ... [more]
CML22_ORYSJ4.012e-1246.67Probable calcium-binding protein CML22 OS=Oryza sa... [more]
CML42_ARATH5.240e-1250.70Calcium-binding protein CML42 OS=Arabidopsis thali... [more]
CML17_ORYSJ3.397e-1152.38Probable calcium-binding protein CML17 OS=Oryza sa... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN1CE06RM1 EHR Citrus clementina cDNA clone KN0AAN1CE06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876840 ID=FC876840; Name=FC876840; organism=Citrus clementina; type=EST; length=767bp
CGGCTGCACGAATTCTGCACGAGGATTCATTTTCTCATATCACCCAAAAC
ATCTTATAGTTTCAACATTGCTATGGCTGCTAACAGTTTTTACTGCTTAA
TTACAATGCAAAAATCACCAGGAAACAAGAACCAACACCCCTTTAATCAA
TTCTTTGCATTCATTCAAGGCTTTTTGTTTCATAACTTTCTAACAATGAT
CAGTTGCGTTAACACTTTTTTCTTAACCCATCGTTCTTTTGTCCAATCCC
AATTTGAGTCTTGCGAGTCAAGAAATTGGGATGACAACAGCCAAGATTTT
AAGTTGTGCAGCAAACAACCTTCCTGCAATGAGAAGAAACATGACGATGA
GAGTCTCTCTAGAGATCAAGTGGAGACGGTGATGACAAACTTGACACTTT
TTTGCAGCCCCGAAGGCGAGGAGCTTCCGCAGAAGGTCGGTTCCAGAGAG
CTTTCCAGGTTGTTTGAGGAGAAAGAACCAAGCTTGGAGGAGGTGAAGGA
TGCTTTTGATGTGTTTGATGAGAACAAAGATGGCTTTATTGATGCCCTGG
AGTTGCAGAGAGTGCTCTGTATTTTGGGCATGAAAGAGGGATTCCAGCTG
GAGAACTGCAAGAAAATGATCAAAACTTTTGATGAAAACGGAGATGGAAG
GATAGATTTTAAGGAATTTGTAAAGTTTATGGAGAGTAGCTTTGTTGAAT
CCTAATTAATTTACACAATATAAGTAACACAGCTTGGCTGTTTACCTTAT
TCCTTTCAATTTCAATT
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