FC876863

Overview
NameFC876863
Unique NameFC876863
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length690
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876863 vs. ExPASy Swiss-Prot
Match: ZC3HF_DANRE (Zinc finger CCCH domain-containing protein 15 OS=Danio rerio GN=zc3h15 PE=2 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 3.509e-46
Identity = 103/225 (45.78%), Postives = 136/225 (60.44%), Query Frame = 2
Query:   65 MPPKQQS------KAELAKKQKIVEDKTFGLKNKNKSKNVQKYV-----------QNLKQNVQPKPDQSKVXXXXXXXXXXXXXXXLNDLFKIAVSQPKVPVGVDPKSILCEFYKAGQCQKGFKCKFSHDLNVQRKGEKIDIYSDKRD-----KQTMEDWDQETLEKVVESKNKEYQQNK-PTDIDCKYFLEPVDKKHYGWF*VCPNGGIECHYRHALPPEYVIK 670
            MPPK+ +      K +  KK+KI+EDKTFGLKNK  +K  QK++           QN +Q    + +++K                LN+LFK  V+  KV  GVDPKS+LC F+K GQC KG KCKFSHDL+++RK EK  +Y D RD     K TME+WD++ LE+VV  K+ E ++ K  T I CKYFL+ ++   YGWF VCP GG  C YRHALP  +V+K
Sbjct:    1 MPPKKPAPAAANKKTQEKKKEKIIEDKTFGLKNKKGAKQ-QKFIKAVTQQVKFGQQNARQIAAAESEKTK-----KKDDKKKELSELNELFKPVVAAQKVSKGVDPKSVLCAFFKQGQCTKGDKCKFSHDLSLERKCEKRSLYVDGRDDELLEKDTMENWDEKKLEEVVNKKHGEAEKKKAKTQIVCKYFLDAIENNKYGWFWVCPGGGDNCMYRHALPVGFVLK 219          
BLAST of FC876863 vs. ExPASy Swiss-Prot
Match: TMA46_YEAST (Translation machinery-associated protein 46 OS=Saccharomyces cerevisiae GN=TMA46 PE=1 SV=2)

HSP 1 Score: 184.111 bits (466), Expect = 5.985e-46
Identity = 92/207 (44.44%), Postives = 128/207 (61.84%), Query Frame = 2
Query:   65 MPPKQQSKAELAKKQKIVEDKTFGLKNKNKSKNVQKYVQNLKQNVQPKPDQSKVXXXXXXXXXXXXXXXLNDLFKIAVSQPKVPVGVDPKSILCEFYKAGQCQKGFKCKFSHDLNVQRKGEKIDIYSDKR---DKQTMEDWDQETLEKVVESKNKEYQQNKPTDIDCKYFLEPVDKKHYGWF*VCPNGGIECHYRHALPPEYVIKSH 676
            MPPK+  +A+ A K+K   DKTFG+KNKN+S  VQKY++ ++    PK ++ ++                  LF   V+  +V  GVDPKS++C  +K G C KG KCKFSHDLNV R+ EK D+Y D R   +  TM++WD+E L KV+ SK+        TD  CKYF+E V+   YGWF +CPNGG +C YRH+LP  +V+K++
Sbjct:    1 MPPKKGKQAQAAGKKKDNVDKTFGMKNKNRSTKVQKYIKQVQSQSDPKKEEMRLKKLEEKKRREAEEAERRALFN-PVADQRVRAGVDPKSMVCALFKLGNCNKGAKCKFSHDLNVGRRMEKKDLYQDTRSEKENDTMDNWDEEKLRKVILSKHG--NPKTTTDKVCKYFIEAVENGKYGWFWICPNGGDKCMYRHSLPEGFVLKTN 204          
BLAST of FC876863 vs. ExPASy Swiss-Prot
Match: ZC3HF_DROME (Zinc finger CCCH domain-containing protein 15 homolog OS=Drosophila melanogaster GN=CG8635 PE=1 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 4.289e-44
Identity = 99/209 (47.37%), Postives = 126/209 (60.29%), Query Frame = 2
Query:   62 KMPPKQQSKAELAKKQKIVEDKTFGLKNKNKSKNVQKYVQNLKQNVQ-----PKPDQSKVXXXXXXXXXXXXXXXLNDLFKIAVSQPKVPVGVDPKSILCEFYKAGQCQKGFKCKFSHDLNVQRKGEKIDIYSDKRDK-QTMEDWDQETLEKVVESKNKEYQQNKPTDIDCKYFLEPVDKKHYGWF*VCPNGGIECHYRHALPPEYVIK 670
            K PP    K E  KK+K++EDKTFGLKNK  +K  QK++Q +++ VQ     P+ D  K                L  +FK   +Q KV  G DPKS++C F+K G C KG KCKFSHDL+ + K EK  IY D RD+   M +WD   L++VVE K+   +Q   TDI CK+FLE V+K  YGWF  CPNGG +C YRHALP  YV+K
Sbjct:    5 KAPPGPSKKTEQKKKEKVIEDKTFGLKNKKGNKQ-QKFIQQVQKQVQSGGQHPRQDGDKRKEEKEKKLAEQREMAL--IFKPVQTQ-KVEKGTDPKSVVCAFFKQGTCTKGDKCKFSHDLSQENKVEKRSIYVDMRDEDDPMTNWDDAKLKEVVEKKSSGEKQRPTTDIICKFFLEAVEKSKYGWFWECPNGG-KCIYRHALPAGYVLK 208          
BLAST of FC876863 vs. ExPASy Swiss-Prot
Match: ZC3HF_CAEEL (Zinc finger CCCH domain-containing protein 15 homolog OS=Caenorhabditis elegans GN=F27D4.4 PE=2 SV=3)

HSP 1 Score: 175.252 bits (443), Expect = 2.780e-43
Identity = 95/215 (44.19%), Postives = 125/215 (58.14%), Query Frame = 2
Query:   65 MPPKQQS---KAELAKKQKIVEDKTFGLKNKNKSKNVQKYVQNLKQNVQPKPDQSKVXXXXXXXXXXXXXXXLNDLFKIAVSQPKVPVGVDPKSILCEFYKAGQCQKGFKCKFSHDLNVQRKGEKIDIYSDKR----DKQTMEDWDQETLEKVVESKNKEYQQNKPTDIDCKYFLEPVDKKHYGWF*VCPNGGIECHYRHALPPEYVIKSHMTAL 688
            MPPKQQ    K+E  +K+K++EDKTFGLKNK  +KN QK+V  ++  V+    +  +               L+    +   + KV   VDPKS+LC F+K G C KG KCKFSHDL V +K  K ++Y+D R    D++T E+WD + L +VV  KNK        DI CKYFLE V+   YGWF  CPNGG +C YRH LP  YV+K    A+
Sbjct:    1 MPPKQQGPSKKSEQKRKEKVIEDKTFGLKNKKGNKN-QKFVAQVENQVRNNNTRMDLVRQQEAAKKKEKDELLDIANLLKPVEQKVAKDVDPKSLLCVFFKQGLCGKGAKCKFSHDLAVAQKTAKKNLYADSREVEKDEETNENWDSDKLNEVVNKKNKNKHM---IDIVCKYFLEAVENNKYGWFWECPNGGEKCQYRHCLPEGYVLKKERKAM 211          
BLAST of FC876863 vs. ExPASy Swiss-Prot
Match: ZC3HF_DROPS (Zinc finger CCCH domain-containing protein 15 homolog OS=Drosophila pseudoobscura pseudoobscura GN=GA21225 PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 8.089e-43
Identity = 93/211 (44.08%), Postives = 126/211 (59.72%), Query Frame = 2
Query:   65 MPPKQ-----QSKAELAKKQKIVEDKTFGLKNKNKSKNVQKYVQNLKQNVQPKPDQSKVXXXXXXXXXXXXXXXLNDLFKI--AVSQPKVPVGVDPKSILCEFYKAGQCQKGFKCKFSHDLNVQRKGEKIDIYSDKRDKQ--TMEDWDQETLEKVVESKNKEYQQNKPTDIDCKYFLEPVDKKHYGWF*VCPNGGIECHYRHALPPEYVIK 670
            MPPK+       K E  KK+K++EDKTFGLKNK  +K  QK++Q +++ VQ      +                L ++  I   V   KV  G DPKS++C F+K G C KG KCKFSHDL+++ K EK  +Y D RD +   M +WD   L++VV+ K+ E ++   T+I CK+FLE V+K  YGWF  CPNG  +C YRHALPP YV+K
Sbjct:    1 MPPKKAPAGPSKKTEQKKKEKVIEDKTFGLKNKKGNKQ-QKFIQQVQKQVQAGGHHPRQDGDKKKDEKEKKLADLREMASIFKPVQTQKVDKGTDPKSVVCAFFKQGLCTKGDKCKFSHDLSLENKVEKRSMYVDMRDNEDDLMTNWDDAKLKEVVDKKHSEEKRRPTTEIICKFFLEAVEKSKYGWFWECPNGE-KCIYRHALPPGYVLK 209          
BLAST of FC876863 vs. ExPASy Swiss-Prot
Match: ZC3HF_CAEBR (Zinc finger CCCH domain-containing protein 15 homolog OS=Caenorhabditis briggsae GN=CBG00292 PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 8.371e-40
Identity = 94/222 (42.34%), Postives = 123/222 (55.41%), Query Frame = 2
Query:   65 MPPKQ--QSKAELAKKQKIVEDKTFGLKNKNKSKNVQKYVQNLKQNVQPKPDQSKVXXXXXXXXXXXXXXXLNDLFKIAVSQPKVPVGVDPKSILCEFYKAGQCQKGFKCKFSHDLNVQRKGEKIDIYSDKRDKQTMEDWDQETLEKVVESKNKEYQ------------QNKPTDIDCKYFLEPVDKKHYGWF*VCPNGGIECHYRHALPPEYVIKSHMTAL 688
            MPPKQ    KAE  +K+K++EDKTFGLKNK  +KN QK+V  ++  V+    +  +               L+    +   + KV   VDPKS+LC F+K G C KG KCKFSHDL V +K  K ++Y+DK    T E+WD+E L++VV  KNK                 K  +  CKYFLE V+   YGWF  CPNGG +C YRH LP  YV+K    A+
Sbjct:    1 MPPKQAPSKKAENKRKEKVIEDKTFGLKNKKGNKN-QKFVAQIENQVRNNNTRMDLVRQQEAAKKKEKDELLDIQNLLKPVEQKVAKDVDPKSLLCVFFKQGLCGKGAKCKFSHDLAVAQKTAKKNLYADK----TNENWDKEKLDEVVNKKNKGGHVIDIVRDFLMIFALKNQEKVCKYFLEAVENNKYGWFWECPNGGDKCQYRHCLPEGYVLKKDRKAM 217          
The following BLAST results are available for this feature:
BLAST of FC876863 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
ZC3HF_DANRE3.509e-4645.78Zinc finger CCCH domain-containing protein 15 OS=D... [more]
TMA46_YEAST5.985e-4644.44Translation machinery-associated protein 46 OS=Sac... [more]
ZC3HF_DROME4.289e-4447.37Zinc finger CCCH domain-containing protein 15 homo... [more]
ZC3HF_CAEEL2.780e-4344.19Zinc finger CCCH domain-containing protein 15 homo... [more]
ZC3HF_DROPS8.089e-4344.08Zinc finger CCCH domain-containing protein 15 homo... [more]
ZC3HF_CAEBR8.371e-4042.34Zinc finger CCCH domain-containing protein 15 homo... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN1CF10RM1 EHR Citrus clementina cDNA clone KN0AAN1CF10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876863 ID=FC876863; Name=FC876863; organism=Citrus clementina; type=EST; length=690bp
GCACGAGGAATTAAATCAAGGATATTTTATTTTGTCTTGTTATTGAATTT
GATGATCATAAAAGATGCCGCCGAAGCAGCAATCGAAAGCAGAATTAGCG
AAGAAGCAGAAGATCGTCGAAGACAAGACCTTCGGTCTTAAGAACAAAAA
CAAAAGCAAAAACGTTCAGAAATATGTTCAGAATCTCAAACAGAACGTTC
AGCCAAAACCCGACCAGTCTAAGGTCGCCGCCAAGAAAAAGAAGGAGGAA
GAGAAGGCTAAAGAGAAAGAGCTGAATGATCTGTTCAAGATTGCTGTTAG
TCAGCCTAAAGTTCCAGTTGGTGTTGATCCTAAGTCTATATTGTGCGAGT
TTTATAAAGCGGGACAGTGTCAGAAAGGTTTTAAATGCAAGTTCTCACAT
GATTTGAATGTTCAGAGGAAAGGGGAAAAGATTGACATTTACAGTGACAA
GCGCGACAAACAAACAATGGAGGATTGGGATCAGGAAACTTTGGAGAAAG
TTGTGGAATCAAAGAATAAAGAATACCAGCAGAACAAACCTACAGATATT
GATTGTAAATACTTTTTAGAACCTGTGGATAAGAAACATTATGGCTGGTT
TTGAGTCTGCCCAAATGGTGGTATAGAGTGCCATTACAGGCACGCTCTTC
CTCCTGAATATGTTATAAAATCACATATGACGGCTCTGTT
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