FC876871

Overview
NameFC876871
Unique NameFC876871
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length677
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC876871 vs. ExPASy Swiss-Prot
Match: RS17E_META3 (30S ribosomal protein S17e OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rps17e PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.216e-11
Identity = 29/61 (47.54%), Postives = 46/61 (75.41%), Query Frame = 3 
Query:   75 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRI 257
            MGR+R   +K++   ++E+Y  R+T DF TNKK+++EVA I +KRLRN++AG+ T  MK++
Sbjct:    1 MGRIRQTFIKRAGEDLVEKYEDRLTTDFETNKKVIDEVAEIATKRLRNRVAGYVTKKMKKV 61
The following BLAST results are available for this feature:
BLAST of FC876871 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
RS17E_META31.216e-1147.5430S ribosomal protein S17e OS=Methanococcus aeolic... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN3BC08RM1 EHR Citrus clementina cDNA clone KN0AAN3BC08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876871 ID=FC876871; Name=FC876871; organism=Citrus clementina; type=EST; length=677bp
GCACGAGGCTCAAGCTCTTCTGCTTCACCGTCTTTGTCTTCTTCAAGACA
GCAGCAGCAGCTTCTTAAACTGAAATGGGTCGTGTTCGTACCAAGACCGT
GAAGAAGTCCTCTCGCCAGGTGATTGAGAGGTACTACTCAAGAATGACAC
TGGACTTCCATACCAACAAGAAAATTTTGGAGGAGGTTGCTATCATCCCC
TCGAAGAGGCTGCGTAACAAAATTGCTGGGTTCTCAACCCATTTGATGAA
GAGGATTCAGAAGGGTCCAGTTCGTGGAATCTCCCTTAAATTGCAGGAAG
AGGAGCGCGAACGCCGCATGGACTTTGTGCCTGATGAGTCAGCTATTAAG
ACTGATGAAATTAAGGTTGACAAGGAAACCTTGGATATGCTTGCTGCTCT
TGGCATGTCCGACATTTCTGGGCTTGTTGAAGTTGAGCCACAGAGCATGA
TTACTCCTCCAGTTTTTGGTCGGGGTGGTGGCAGGAGGTACTGAGTTAAT
TGAGGCTTTGTGGCTCAATCAAGAATGAGAAGTTTAGGTTCTTATTAATC
AGTACTTCTTGTGTTTGTTATGAATGCTTTTGTGACTAGTTTTCTTTACT
ATTTTAAGAAGGGTGTTTAGTTAAAACTTGAACTCTGGNATCATACTTTA
ATTGATTTAATGGACTTGTTTTGTCTT
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