FC876876

Overview
NameFC876876
Unique NameFC876876
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length647
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876876 vs. ExPASy Swiss-Prot
Match: ZC3HF_DICDI (Zinc finger CCCH domain-containing protein 15 homolog OS=Dictyostelium discoideum GN=DDB_G0292410 PE=3 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 9.726e-48
Identity = 99/202 (49.01%), Postives = 128/202 (63.37%), Query Frame = 3
Query:   66 MPPKH-QSKAELAK-KQKIVEDKTFGLNNKNKSKNVQKYVQNLKQNV-----QPKPDQSKVXXXXXXXXXXXXXXXLNDLFKIAVSQPKVPVGVDPKSILCEFYKAG-QCQKGFKCKFSHDLNVQRKGEKIDIYSDKR-DKETMEDWDQETLEKVVESKNNEYQQNKPTDIVCKYFLESVENKQYGWFWVCPNGGKDCHYRH 644
            MPPK  QSK  + K K+K VEDKTFGL NKNKSK V  YV  ++  V     Q K    K                   +    + Q KVP+GVDPKSI+CE++K G  C KG +CKF+HDL   RK EKIDIY+D+R D++TME+WD+  L+ VVE K     + KPT I+CK+FL+++E+K+YGWFW CPNGG+ C Y+H
Sbjct:    1 MPPKQAQSKKTVEKEKKKKVEDKTFGLKNKNKSKKVAAYVSQVEAQVKHSGLQNKEAALKEKAKRDKELAEKAKKEAESILVNTIVQSKVPLGVDPKSIVCEYFKQGVTCPKGNRCKFAHDLAAGRKSEKIDIYTDRRKDEDTMENWDEAKLKSVVEKKRTTENKAKPTAIICKFFLDAIESKKYGWFWECPNGGEKCAYQH 202          
BLAST of FC876876 vs. ExPASy Swiss-Prot
Match: TMA46_YEAST (Translation machinery-associated protein 46 OS=Saccharomyces cerevisiae GN=TMA46 PE=1 SV=2)

HSP 1 Score: 187.193 bits (474), Expect = 6.304e-47
Identity = 91/197 (46.19%), Postives = 123/197 (62.44%), Query Frame = 3
Query:   66 MPPKHQSKAELAKKQKIVEDKTFGLNNKNKSKNVQKYVQNLKQNVQPKPDQSKVXXXXXXXXXXXXXXXLNDLFKIAVSQPKVPVGVDPKSILCEFYKAGQCQKGFKCKFSHDLNVQRKGEKIDIYSDKR---DKETMEDWDQETLEKVVESKNNEYQQNKPTDIVCKYFLESVENKQYGWFWVCPNGGKDCHYRHA 647
            MPPK   +A+ A K+K   DKTFG+ NKN+S  VQKY++ ++    PK ++ ++                  LF   V+  +V  GVDPKS++C  +K G C KG KCKFSHDLNV R+ EK D+Y D R   + +TM++WD+E L KV+ SK+        TD VCKYF+E+VEN +YGWFW+CPNGG  C YRH+
Sbjct:    1 MPPKKGKQAQAAGKKKDNVDKTFGMKNKNRSTKVQKYIKQVQSQSDPKKEEMRLKKLEEKKRREAEEAERRALFN-PVADQRVRAGVDPKSMVCALFKLGNCNKGAKCKFSHDLNVGRRMEKKDLYQDTRSEKENDTMDNWDEEKLRKVILSKHG--NPKTTTDKVCKYFIEAVENGKYGWFWICPNGGDKCMYRHS 194          
BLAST of FC876876 vs. ExPASy Swiss-Prot
Match: ZC3HF_DROME (Zinc finger CCCH domain-containing protein 15 homolog OS=Drosophila melanogaster GN=CG8635 PE=1 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 6.524e-44
Identity = 95/201 (47.26%), Postives = 124/201 (61.69%), Query Frame = 3
Query:   63 KMPPKHQSKAELAKKQKIVEDKTFGLNNKNKSKNVQKYVQNLKQNVQ-----PKPDQSKVXXXXXXXXXXXXXXXLNDLFKIAVSQPKVPVGVDPKSILCEFYKAGQCQKGFKCKFSHDLNVQRKGEKIDIYSDKRDKET-MEDWDQETLEKVVESKNNEYQQNKPTDIVCKYFLESVENKQYGWFWVCPNGGKDCHYRHA 647
            K PP    K E  KK+K++EDKTFGL NK  +K  QK++Q +++ VQ     P+ D  K                L  +FK   +Q KV  G DPKS++C F+K G C KG KCKFSHDL+ + K EK  IY D RD++  M +WD   L++VVE K++  +Q   TDI+CK+FLE+VE  +YGWFW CPNGGK C YRHA
Sbjct:    5 KAPPGPSKKTEQKKKEKVIEDKTFGLKNKKGNKQ-QKFIQQVQKQVQSGGQHPRQDGDKRKEEKEKKLAEQREMAL--IFKPVQTQ-KVEKGTDPKSVVCAFFKQGTCTKGDKCKFSHDLSQENKVEKRSIYVDMRDEDDPMTNWDDAKLKEVVEKKSSGEKQRPTTDIICKFFLEAVEKSKYGWFWECPNGGK-CIYRHA 200          
BLAST of FC876876 vs. ExPASy Swiss-Prot
Match: ZC3HF_CAEEL (Zinc finger CCCH domain-containing protein 15 homolog OS=Caenorhabditis elegans GN=F27D4.4 PE=2 SV=3)

HSP 1 Score: 173.326 bits (438), Expect = 9.420e-43
Identity = 91/200 (45.50%), Postives = 119/200 (59.50%), Query Frame = 3
Query:   66 MPPKHQS---KAELAKKQKIVEDKTFGLNNKNKSKNVQKYVQNLKQNVQPKPDQSKVXXXXXXXXXXXXXXXLNDLFKIAVSQPKVPVGVDPKSILCEFYKAGQCQKGFKCKFSHDLNVQRKGEKIDIYSDKR----DKETMEDWDQETLEKVVESKNNEYQQNKPTDIVCKYFLESVENKQYGWFWVCPNGGKDCHYRH 644
            MPPK Q    K+E  +K+K++EDKTFGL NK  +KN QK+V  ++  V+    +  +               L+    +   + KV   VDPKS+LC F+K G C KG KCKFSHDL V +K  K ++Y+D R    D+ET E+WD + L +VV  KN         DIVCKYFLE+VEN +YGWFW CPNGG+ C YRH
Sbjct:    1 MPPKQQGPSKKSEQKRKEKVIEDKTFGLKNKKGNKN-QKFVAQVENQVRNNNTRMDLVRQQEAAKKKEKDELLDIANLLKPVEQKVAKDVDPKSLLCVFFKQGLCGKGAKCKFSHDLAVAQKTAKKNLYADSREVEKDEETNENWDSDKLNEVVNKKNKNKHM---IDIVCKYFLEAVENNKYGWFWECPNGGEKCQYRH 196          
BLAST of FC876876 vs. ExPASy Swiss-Prot
Match: ZC3HF_DROPS (Zinc finger CCCH domain-containing protein 15 homolog OS=Drosophila pseudoobscura pseudoobscura GN=GA21225 PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.042e-41
Identity = 89/203 (43.84%), Postives = 121/203 (59.61%), Query Frame = 3
Query:   66 MPPKH-----QSKAELAKKQKIVEDKTFGLNNKNKSKNVQKYVQNLKQNVQPKPDQSKVXXXXXXXXXXXXXXXLNDLFKI--AVSQPKVPVGVDPKSILCEFYKAGQCQKGFKCKFSHDLNVQRKGEKIDIYSDKRDKET--MEDWDQETLEKVVESKNNEYQQNKPTDIVCKYFLESVENKQYGWFWVCPNGGKDCHYRHA 647
            MPPK        K E  KK+K++EDKTFGL NK  +K  QK++Q +++ VQ      +                L ++  I   V   KV  G DPKS++C F+K G C KG KCKFSHDL+++ K EK  +Y D RD E   M +WD   L++VV+ K++E ++   T+I+CK+FLE+VE  +YGWFW CPNG K C YRHA
Sbjct:    1 MPPKKAPAGPSKKTEQKKKEKVIEDKTFGLKNKKGNKQ-QKFIQQVQKQVQAGGHHPRQDGDKKKDEKEKKLADLREMASIFKPVQTQKVDKGTDPKSVVCAFFKQGLCTKGDKCKFSHDLSLENKVEKRSMYVDMRDNEDDLMTNWDDAKLKEVVDKKHSEEKRRPTTEIICKFFLEAVEKSKYGWFWECPNGEK-CIYRHA 201          
BLAST of FC876876 vs. ExPASy Swiss-Prot
Match: ZC3HF_CAEBR (Zinc finger CCCH domain-containing protein 15 homolog OS=Caenorhabditis briggsae GN=CBG00292 PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 8.253e-39
Identity = 89/207 (43.00%), Postives = 116/207 (56.04%), Query Frame = 3
Query:   66 MPPKH--QSKAELAKKQKIVEDKTFGLNNKNKSKNVQKYVQNLKQNVQPKPDQSKVXXXXXXXXXXXXXXXLNDLFKIAVSQPKVPVGVDPKSILCEFYKAGQCQKGFKCKFSHDLNVQRKGEKIDIYSDKRDKETMEDWDQETLEKVVESKNNEYQ------------QNKPTDIVCKYFLESVENKQYGWFWVCPNGGKDCHYRH 644
            MPPK     KAE  +K+K++EDKTFGL NK  +KN QK+V  ++  V+    +  +               L+    +   + KV   VDPKS+LC F+K G C KG KCKFSHDL V +K  K ++Y+DK    T E+WD+E L++VV  KN                  K  + VCKYFLE+VEN +YGWFW CPNGG  C YRH
Sbjct:    1 MPPKQAPSKKAENKRKEKVIEDKTFGLKNKKGNKN-QKFVAQIENQVRNNNTRMDLVRQQEAAKKKEKDELLDIQNLLKPVEQKVAKDVDPKSLLCVFFKQGLCGKGAKCKFSHDLAVAQKTAKKNLYADK----TNENWDKEKLDEVVNKKNKGGHVIDIVRDFLMIFALKNQEKVCKYFLEAVENNKYGWFWECPNGGDKCQYRH 202          
BLAST of FC876876 vs. ExPASy Swiss-Prot
Match: MEP33_SCHPO (mRNA export protein 33 OS=Schizosaccharomyces pombe GN=mep33 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.418e-14
Identity = 62/205 (30.24%), Postives = 88/205 (42.93%), Query Frame = 3
Query:   66 MPPKHQSKAE-----LAKKQ--KIVEDKTFGLNNKNKSKNVQKYVQNLKQNVQPKPDQ-SKVXXXXXXXXXXXXXXXLNDLFKIAVSQPKVPVGVDPKSILCEFYKAGQCQKGFKCKFSHDLNVQRKGEKIDIYSDKRDKETMEDWDQETLEKVVESKNNEYQQNKP---TDIVCKYFLESVENKQYGWFWVCPNGGKDCHYRHA 647
            MPPK  +K +      AKK   K   D TFGL NKN+S  VQ  ++ ++QN      + +K                     ++A     +P    P++ L    +                   ++ +KID+YSD RD++T        LEK            +P   TDIVCK+FLE+ E  +YGW W CPNG   C Y+HA
Sbjct:    1 MPPKKAAKGKGDPGKAAKKDPTKKAADATFGLKNKNRSTKVQAKIRQIEQNAAASGSKDAKRQEALRKRREEEKRAAEAAKAEVAALFNAIPKKQTPQNFLTRKEEV------------------KESQKIDLYSDVRDQQT-----DLPLEK------------RPWINTDIVCKFFLEACETGKYGWLWQCPNGNMTCIYKHA 170          
The following BLAST results are available for this feature:
BLAST of FC876876 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
ZC3HF_DICDI9.726e-4849.01Zinc finger CCCH domain-containing protein 15 homo... [more]
TMA46_YEAST6.304e-4746.19Translation machinery-associated protein 46 OS=Sac... [more]
ZC3HF_DROME6.524e-4447.26Zinc finger CCCH domain-containing protein 15 homo... [more]
ZC3HF_CAEEL9.420e-4345.50Zinc finger CCCH domain-containing protein 15 homo... [more]
ZC3HF_DROPS1.042e-4143.84Zinc finger CCCH domain-containing protein 15 homo... [more]
ZC3HF_CAEBR8.253e-3943.00Zinc finger CCCH domain-containing protein 15 homo... [more]
MEP33_SCHPO2.418e-1430.24mRNA export protein 33 OS=Schizosaccharomyces pomb... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN1CG07RM1 EHR Citrus clementina cDNA clone KN0AAN1CG07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876876 ID=FC876876; Name=FC876876; organism=Citrus clementina; type=EST; length=647bp
CGCACGAGGAATTAAATCGAGGATATTTTATTTTGTCTTGTTATTGAATT
TGATGATCATAAAAGATGCCGCCGAAGCATCAATCGAAAGCAGAATTAGC
GAAGAAGCAGAAGATCGTCGAAGACAAGACCTTCGGTCTTAACAACAAAA
ACAAAAGCAAAAACGTTCAGAAATATGTTCAGAATCTCAAACAGAACGTT
CAGCCCAAACCCGACCAGTCTAAGGTCGCCGCCAAGAAAAAGAAGGAGGA
AGAGAAGGCTAAAGAGAAAGAGCTGAATGATCTGTTCAAGATTGCTGTTA
GTCAGCCTAAAGTTCCAGTTGGTGTTGATCCTAAGTCTATATTGTGCGAG
TTTTATAAAGCGGGACAGTGTCAGAAAGGTTTTAAATGCAAGTTCTCACA
TGATTTGAATGTTCAGAGGAAAGGGGAAAAGATTGACATTTACAGTGACA
AGCGCGACAAAGAAACAATGGAGGATTGGGATCAGGAAACTTTGGAGAAG
GTTGTGGAATCAAAGAATAATGAATACCAGCAGAACAAACCTACAGATAT
TGTTTGTAAATACTTTTTAGAATCTGTGGAGAATAAACAGTATGGCTGGT
TTTGGGTCTGCCCAAATGGTGGTAAAGATTGCCATTACAGGCATGCT
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