FC876923

Overview
NameFC876923
Unique NameFC876923
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length737
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876923 vs. ExPASy Swiss-Prot
Match: GPMI_CLOK5 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680) GN=gpmI PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.030e-11
Identity = 45/149 (30.20%), Postives = 69/149 (46.31%), Query Frame = -3
Query:  289 PKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKFGEPLFKDGNIQVLTSHTFKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINFHGYEAPSD 735
            P+M A E+       +   ++  + +N  N DMVGHTG  +A   A +  DE +  I+  I +  G   +TADHGN+E MV         +  GN   +T+HT   VP         +  + R D   G LA+++ T +   G E P +
Sbjct:  369 PEMSAREVTSTVLDRLDQDKYDMIILNFANPDMVGHTGIFQAAKKAIEVVDECLGRIVSKILEKNGTVFITADHGNSEQMVD--------YSTGN--PMTAHTTNSVPFLYVS---KNSTELRKD---GILADISPTILQVMGLEKPKE 501          
BLAST of FC876923 vs. ExPASy Swiss-Prot
Match: GPMI_HELHP (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Helicobacter hepaticus GN=gpmI PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.182e-11
Identity = 44/151 (29.14%), Postives = 75/151 (49.67%), Query Frame = -3
Query:  283 PKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKFGEPLFKDGNIQVLTSHTFKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINFHGYEAPSDYE 735
            P+M A  + +   KA+  + +  V VN  N DMVGHTG++EA + A +A D+ +  I+++ +K      +T+DHGN E+M           KD    +LT+HT       +G       ++  + + NGGL N+A + +       P + +
Sbjct:  355 PQMNASAVGDAVIKAV-EQGYDFVVVNFANGDMVGHTGNLEAAIKAVEAVDKELGRIVESAQKHHYALFITSDHGNCEEM-----------KDEKGNMLTNHT-------VGQVWCFGMIEGVSKIENGGLNNIAPSVLKAMNLPIPPEMD 486          
The following BLAST results are available for this feature:
BLAST of FC876923 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 262
Match NameE-valueIdentityDescription
GPMI_CLOK57.030e-1130.202,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_HELHP9.182e-1129.142,3-bisphosphoglycerate-independent phosphoglycera... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN3BG10RM1 EHR Citrus clementina cDNA clone KN0AAN3BG10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876923 ID=FC876923; Name=FC876923; organism=Citrus clementina; type=EST; length=737bp
GCACGAGGGAGAGAACTAGTCTCAGTTTTTTTTTTTTTTTTTTTTTTTTT
CTAACAAAAATAAATTTTGAGCTATATTGTTCTGTCTGCCTCCAACAAAC
AGCAATCGAAATGTAAGCTGAAAAACAGCACGCGTATCAAAATGAATTCA
AAACCCCAAAATTCAATTTATTGTTTTACGTTTTAACGGAATTCCTCCGG
AGTTATAAAATCTAGGCGACGATCCATTGTTCGCCCAGTCGTCAGTTACT
TCTCAGTCGTCAGTTACTTCAATAAAACTTGGCTCGTAGTCACTAGGCGC
CTCATATCCATGGAAATTGATAAAAGTTGCTGCTACATTGGCCAGCCCAC
CATTAGGGAGATCTGTGCGGAACTTGACATCATCTGGCAGTCCAGGACCT
CCGATTGCAATGGGAACGGGTTTAAAAGTGTGAGACGTGAGCACTTGAAT
ATTGCCATCCTTAAAAAGAGGCTCCCCAAATTTGTTCCTCTTGACCATGT
CCTCAGCATTGCCATGATCTGCAGTAACAAGATATATTCCACCAACTTTC
TCTATTGCATCAATGATTATCTTGACAGCTTCATCAGCAGCCTTGCATGC
CACCACTGTTGCCTCAATATCTCCCGTGTGCCCCACCATGTCACTATTTG
GTAGGTTAACACGCACCTGGTGGAACCTGCGACTAAGGATGGCCTTCTTT
GCCCTTTCAGCAATCTCCAAAGCCTTCATCTTGGGCT
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