FC876923

Overview
NameFC876923
Unique NameFC876923
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length737
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876923 vs. ExPASy Swiss-Prot
Match: GPMI_PARDP (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Paracoccus denitrificans (strain Pd 1222) GN=gpmI PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.849e-17
Identity = 53/149 (35.57%), Postives = 81/149 (54.36%), Query Frame = -3
Query:  289 PKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKFGEPLFKDGNIQVLTSHTFKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINFHGYEAPSD 735
            P+M A E++ +  +AI    +  + VN  N DMVGHTG + A + AC+A D+ + ++++A+EK GG  +V ADHGN E  +     G            T+HT  PVP+ + G   P+  K R    NG LA+VA T ++  G + P +
Sbjct:  366 PEMAAPEVSAKLVEAI-EAGYDLIVVNYANPDMVGHTGSLPAAIRACEAVDKGLGMMLEALEKAGGAAVVIADHGNCETTIDPETGGPH----------TAHTTNPVPVIVFGG--PEGAKLR----NGRLADVAPTVLDLMGLDLPPE 497          
BLAST of FC876923 vs. ExPASy Swiss-Prot
Match: GPMI_SHESW (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Shewanella sp. (strain W3-18-1) GN=gpmI PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.565e-17
Identity = 51/149 (34.23%), Postives = 77/149 (51.68%), Query Frame = -3
Query:  289 PKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKFGEPLFKDGNIQVLTSHTFKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINFHGYEAPSD 735
            P+M + E+ ++   AI S ++  +  N PN DMVGHTG+ +A V AC+A D  +  +++A+ KVGG  ++TADHGNAE M            +   Q  T+HT + VP    G     D         G L++VA T +   G   P++
Sbjct:  372 PEMSSTELTDKLVAAIESTKYDVIICNYPNGDMVGHTGNFDAAVKACEAVDTCIGRVVEALAKVGGECIITADHGNAEQMT----------DETTGQAHTAHTSELVPFIFVGRDATID-------KGGKLSDVAPTILQLIGETIPAE 503          
BLAST of FC876923 vs. ExPASy Swiss-Prot
Match: GPMI_SHEPC (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=gpmI PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.565e-17
Identity = 51/149 (34.23%), Postives = 77/149 (51.68%), Query Frame = -3
Query:  289 PKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKFGEPLFKDGNIQVLTSHTFKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINFHGYEAPSD 735
            P+M + E+ ++   AI S ++  +  N PN DMVGHTG+ +A V AC+A D  +  +++A+ KVGG  ++TADHGNAE M            +   Q  T+HT + VP    G     D         G L++VA T +   G   P++
Sbjct:  372 PEMSSTELTDKLVAAIESTKYDVIICNYPNGDMVGHTGNFDAAVKACEAVDTCIGRVVEALAKVGGECIITADHGNAEQMT----------DETTGQAHTAHTSELVPFIFVGRDATID-------KGGKLSDVAPTILQLIGETIPAE 503          
BLAST of FC876923 vs. ExPASy Swiss-Prot
Match: GPMI_AGRT5 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=gpmI PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.565e-17
Identity = 53/149 (35.57%), Postives = 79/149 (53.02%), Query Frame = -3
Query:  289 PKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKFGEPLFKDGNIQVLTSHTFKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINFHGYEAPSD 735
            P+M A E+ E+  + ++ + +  +  N  N DMVGHTGD++A + AC+A D  +  ++ A+EKVGG  LV ADHGN E MV     G            T+HT  PVP+ + G   P+  K    + +G LA+VA T +       P +
Sbjct:  365 PEMSAAEVTEKFVE-VIGKGYDLIVTNYANPDMVGHTGDLQAAIKACEAVDRGLGAVVAALEKVGGAMLVIADHGNCETMVDPVTGGPH----------TAHTTNPVPVILFGG--PEGAK----VHDGILADVAPTLLQLMNVPLPPE 496          
BLAST of FC876923 vs. ExPASy Swiss-Prot
Match: GPMI2_METBF (2,3-bisphosphoglycerate-independent phosphoglycerate mutase 2 OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=gpmI2 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.565e-17
Identity = 55/149 (36.91%), Postives = 80/149 (53.69%), Query Frame = -3
Query:  289 PKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKFGEPLFKDGNIQVLTSHTFKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINFHGYEAPSD 735
            P+M A EI +   + I S ++  + +N  N DMVGHTG  EA V A +A D+ +  I++ +++ GG+ L+TADHGNAE+M+   K GEP          T+HT  PV     G     ++K    L NG L +VA T +   G   P +
Sbjct:  383 PEMSAYEITDEVIRRIQSGKYDVIVLNFANMDMVGHTGIFEAAVKAVEAVDKCIGRIVEVLKEKGGVALITADHGNAEEMIDL-KTGEP---------HTAHTSNPVKCIYFG---NSEIK---ALRNGKLCDVAPTILELLGIPKPQE 515          
BLAST of FC876923 vs. ExPASy Swiss-Prot
Match: GPMI_PSE14 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=gpmI PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.574e-17
Identity = 57/149 (38.26%), Postives = 77/149 (51.68%), Query Frame = -3
Query:  289 PKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKFGEPLFKDGNIQVLTSHTFKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINFHGYEAPSD 735
            P+M A E+ ++   AI  +R+  + VN  N DMVGH+G +EA + A +  D  V  I  A+EKVGG  L+TADHGN E M            D   Q  T+HT +PVP    G      +K R     G LA+VA T ++  G E P +
Sbjct:  368 PEMSAPEVTDKIVDAIEHQRYDVIIVNYANGDMVGHSGIMEAAIKAVECLDVCVGRITAALEKVGGEALITADHGNVEQMT----------DDSTGQAHTAHTSEPVPFVYVG---KRPLKVR---EGGVLADVAPTMLHLLGMEKPQE 500          
BLAST of FC876923 vs. ExPASy Swiss-Prot
Match: GPMI_CHLSY (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl) GN=gpmI PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.574e-17
Identity = 59/151 (39.07%), Postives = 77/151 (50.99%), Query Frame = -3
Query:  289 PKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKFGEPLFKDGNIQVLTSHTFKPVP-IAIGGPGLPDDVKFRTDLPNGG-LANVAATFINFHGYEAPSD 735
            P+M A E+ E    AI S ++  + VN  N DMVGHTG I A + AC+A D  +  ++ AI + GG+ LV ADHGNAE M+     G            T+HT  P P   IGG G   D     +L +GG LA+VA T +     E   D
Sbjct:  392 PEMSAPEVTEALLAAIDSDQYDFIVVNYANPDMVGHTGSIPAVIKACEAVDAGLARVVPAILERGGVALVIADHGNAEQMIDPETGGPH----------TAHTTNPAPCFLIGGAGYGKDA---IELRHGGRLADVAPTLLELLELEPSPD 529          
BLAST of FC876923 vs. ExPASy Swiss-Prot
Match: GPMI_CHLAA (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=gpmI PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.574e-17
Identity = 59/151 (39.07%), Postives = 77/151 (50.99%), Query Frame = -3
Query:  289 PKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKFGEPLFKDGNIQVLTSHTFKPVP-IAIGGPGLPDDVKFRTDLPNGG-LANVAATFINFHGYEAPSD 735
            P+M A E+ E    AI S ++  + VN  N DMVGHTG I A + AC+A D  +  ++ AI + GG+ LV ADHGNAE M+     G            T+HT  P P   IGG G   D     +L +GG LA+VA T +     E   D
Sbjct:  392 PEMSAPEVTEALLAAIDSDQYDFIVVNYANPDMVGHTGSIPAVIKACEAVDAGLARVVPAILERGGVALVIADHGNAEQMIDPETGGPH----------TAHTTNPAPCFLIGGAGYGKDA---IELRHGGRLADVAPTLLELLELEPSPD 529          
BLAST of FC876923 vs. ExPASy Swiss-Prot
Match: GPMI_VIBSL (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Vibrio splendidus (strain LGP32) GN=gpmI PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.120e-16
Identity = 53/147 (36.05%), Postives = 80/147 (54.42%), Query Frame = -3
Query:  295 PKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKFGEPLFKDGNIQVLTSHTFKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINFHGYEAP 735
            P+M A E+ E+   AI   ++  +  N PN DMVGHTG  +A V A ++ DE +  +++AI++  G  L+TADHGNAE MV     G          + T+HT  PVP+   G     DV+F+     G L+++A T ++  G + P
Sbjct:  370 PEMSAPELTEKLVAAIKGGKYDAIVCNFPNCDMVGHTGVYDAAVKAVESLDECLGKVVEAIKEADGQLLITADHGNAEMMVNPETGG----------IHTAHTNLPVPLIYVG---NKDVEFK---EGGKLSDLAPTMLSLSGIDIP 500          
BLAST of FC876923 vs. ExPASy Swiss-Prot
Match: GPMI_SYNJA (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Synechococcus sp. (strain JA-3-3Ab) GN=gpmI PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.120e-16
Identity = 58/155 (37.42%), Postives = 80/155 (51.61%), Query Frame = -3
Query:  289 PKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKFGEPLFKDGNIQVLTSHTFKPVP-IAIGG-----PGLPDDVKFRTDLPNGGLANVAATFINFHGYEAPSD 735
            P+M A+E+ ++A +AI  R +  V +N  N DMVGHTG+ +ATV A +  D  +  ++ A+  VGG  L+ ADHGNAE           L  D      T+HT  PVP I + G     PG   DVK R+    G LA+V  T +   G   P +
Sbjct:  366 PEMSAVEVTDKAIEAIARREYSLVVLNYANPDMVGHTGNFKATVRALETVDRCLGRLLAAVVDVGGTTLIVADHGNAE-----------LMWDEQGNPWTAHTNNPVPCILVEGERRKIPGRGGDVKLRS---GGTLADVGPTLLEILGLPQPPE 506          
The following BLAST results are available for this feature:
BLAST of FC876923 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 262
Match NameE-valueIdentityDescription
GPMI_PARDP3.849e-1735.572,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SHESW6.565e-1734.232,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SHEPC6.565e-1734.232,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_AGRT56.565e-1735.572,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI2_METBF6.565e-1736.912,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_PSE148.574e-1738.262,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_CHLSY8.574e-1739.072,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_CHLAA8.574e-1739.072,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_VIBSL1.120e-1636.052,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SYNJA1.120e-1637.422,3-bisphosphoglycerate-independent phosphoglycera... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN3BG10RM1 EHR Citrus clementina cDNA clone KN0AAN3BG10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876923 ID=FC876923; Name=FC876923; organism=Citrus clementina; type=EST; length=737bp
GCACGAGGGAGAGAACTAGTCTCAGTTTTTTTTTTTTTTTTTTTTTTTTT
CTAACAAAAATAAATTTTGAGCTATATTGTTCTGTCTGCCTCCAACAAAC
AGCAATCGAAATGTAAGCTGAAAAACAGCACGCGTATCAAAATGAATTCA
AAACCCCAAAATTCAATTTATTGTTTTACGTTTTAACGGAATTCCTCCGG
AGTTATAAAATCTAGGCGACGATCCATTGTTCGCCCAGTCGTCAGTTACT
TCTCAGTCGTCAGTTACTTCAATAAAACTTGGCTCGTAGTCACTAGGCGC
CTCATATCCATGGAAATTGATAAAAGTTGCTGCTACATTGGCCAGCCCAC
CATTAGGGAGATCTGTGCGGAACTTGACATCATCTGGCAGTCCAGGACCT
CCGATTGCAATGGGAACGGGTTTAAAAGTGTGAGACGTGAGCACTTGAAT
ATTGCCATCCTTAAAAAGAGGCTCCCCAAATTTGTTCCTCTTGACCATGT
CCTCAGCATTGCCATGATCTGCAGTAACAAGATATATTCCACCAACTTTC
TCTATTGCATCAATGATTATCTTGACAGCTTCATCAGCAGCCTTGCATGC
CACCACTGTTGCCTCAATATCTCCCGTGTGCCCCACCATGTCACTATTTG
GTAGGTTAACACGCACCTGGTGGAACCTGCGACTAAGGATGGCCTTCTTT
GCCCTTTCAGCAATCTCCAAAGCCTTCATCTTGGGCT
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