FC877013

Overview
NameFC877013
Unique NameFC877013
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length820
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC877013 vs. ExPASy Swiss-Prot
Match: HUTH_SALPA (Histidine ammonia-lyase OS=Salmonella paratyphi A GN=hutH PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.996e-16
Identity = 48/161 (29.81%), Postives = 89/161 (55.28%), Query Frame = 1
Query:  337 LTVAQVAAIATSSTNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKNGGA--LQKELIRFLNAGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSK 813
            L+++Q+  +      + L  SA +G+ AS   V + + +G  +YG+ TGFG  +  R  +     LQ+ L+    AG+          L  +  R  M++++N+L +G+SGIR  ++EA+  L+N  + P +P +G++ ASGDL PL++++  L G   ++
Sbjct:   11 LSLSQLYDVWRHPVQLRLDASAIDGINASVACVNDIVAEGRTAYGINTGFGLLAQTRIADEDLQNLQRSLVLSHAAGV-------GDPLDDAMVRLIMVLKINSLARGFSGIRLSVIEALIALVNAGVYPLIPAKGSVGASGDLAPLAHLSLTLLGEGKAR 164          
BLAST of FC877013 vs. ExPASy Swiss-Prot
Match: HUTH_SALNS (Histidine ammonia-lyase OS=Salmonella newport (strain SL254) GN=hutH PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.996e-16
Identity = 48/161 (29.81%), Postives = 89/161 (55.28%), Query Frame = 1
Query:  337 LTVAQVAAIATSSTNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKNGGA--LQKELIRFLNAGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSK 813
            L+++Q+  +      + L  SA +G+ AS   V + + +G  +YG+ TGFG  +  R  +     LQ+ L+    AG+          L  +  R  M++++N+L +G+SGIR  ++EA+  L+N  + P +P +G++ ASGDL PL++++  L G   ++
Sbjct:   11 LSLSQLYDVWRHPVQLRLDASAIDGINASVACVNDIVAEGRTAYGINTGFGLLAQTRIADEDLQNLQRSLVLSHAAGV-------GDPLDDAMVRLIMVLKINSLARGFSGIRLSVIEALIALVNAGVYPLIPAKGSVGASGDLAPLAHLSLTLLGEGKAR 164          
BLAST of FC877013 vs. ExPASy Swiss-Prot
Match: HUTH_SALHS (Histidine ammonia-lyase OS=Salmonella heidelberg (strain SL476) GN=hutH PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.996e-16
Identity = 48/161 (29.81%), Postives = 89/161 (55.28%), Query Frame = 1
Query:  337 LTVAQVAAIATSSTNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKNGGA--LQKELIRFLNAGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSK 813
            L+++Q+  +      + L  SA +G+ AS   V + + +G  +YG+ TGFG  +  R  +     LQ+ L+    AG+          L  +  R  M++++N+L +G+SGIR  ++EA+  L+N  + P +P +G++ ASGDL PL++++  L G   ++
Sbjct:   11 LSLSQLYDVWRHPVQLRLDASAIDGINASVACVNDIVAEGRTAYGINTGFGLLAQTRIADEDLQNLQRSLVLSHAAGV-------GDPLDDAMVRLIMVLKINSLARGFSGIRLSVIEALIALVNAGVYPLIPAKGSVGASGDLAPLAHLSLTLLGEGKAR 164          
BLAST of FC877013 vs. ExPASy Swiss-Prot
Match: HUTH_SALG2 (Histidine ammonia-lyase OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=hutH PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.996e-16
Identity = 48/161 (29.81%), Postives = 89/161 (55.28%), Query Frame = 1
Query:  337 LTVAQVAAIATSSTNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKNGGA--LQKELIRFLNAGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSK 813
            L+++Q+  +      + L  SA +G+ AS   V + + +G  +YG+ TGFG  +  R  +     LQ+ L+    AG+          L  +  R  M++++N+L +G+SGIR  ++EA+  L+N  + P +P +G++ ASGDL PL++++  L G   ++
Sbjct:   11 LSLSQLYDVWRHPVQLRLDASAIDGINASVACVNDIVAEGRTAYGINTGFGLLAQTRIADEDLQNLQRSLVLSHAAGV-------GDPLDDAMVRLIMVLKINSLARGFSGIRLSVIEALIALVNAGVYPLIPAKGSVGASGDLAPLAHLSLTLLGEGKAR 164          
BLAST of FC877013 vs. ExPASy Swiss-Prot
Match: HUTH_SALEP (Histidine ammonia-lyase OS=Salmonella enteritidis PT4 (strain P125109) GN=hutH PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.996e-16
Identity = 48/161 (29.81%), Postives = 89/161 (55.28%), Query Frame = 1
Query:  337 LTVAQVAAIATSSTNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKNGGA--LQKELIRFLNAGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSK 813
            L+++Q+  +      + L  SA +G+ AS   V + + +G  +YG+ TGFG  +  R  +     LQ+ L+    AG+          L  +  R  M++++N+L +G+SGIR  ++EA+  L+N  + P +P +G++ ASGDL PL++++  L G   ++
Sbjct:   11 LSLSQLYDVWRHPVQLRLDASAIDGINASVACVNDIVAEGRTAYGINTGFGLLAQTRIADEDLQNLQRSLVLSHAAGV-------GDPLDDAMVRLIMVLKINSLARGFSGIRLSVIEALIALVNAGVYPLIPAKGSVGASGDLAPLAHLSLTLLGEGKAR 164          
BLAST of FC877013 vs. ExPASy Swiss-Prot
Match: HUTH_SALDC (Histidine ammonia-lyase OS=Salmonella dublin (strain CT_02021853) GN=hutH PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.996e-16
Identity = 48/161 (29.81%), Postives = 89/161 (55.28%), Query Frame = 1
Query:  337 LTVAQVAAIATSSTNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKNGGA--LQKELIRFLNAGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSK 813
            L+++Q+  +      + L  SA +G+ AS   V + + +G  +YG+ TGFG  +  R  +     LQ+ L+    AG+          L  +  R  M++++N+L +G+SGIR  ++EA+  L+N  + P +P +G++ ASGDL PL++++  L G   ++
Sbjct:   11 LSLSQLYDVWRHPVQLRLDASAIDGINASVACVNDIVAEGRTAYGINTGFGLLAQTRIADEDLQNLQRSLVLSHAAGV-------GDPLDDAMVRLIMVLKINSLARGFSGIRLSVIEALIALVNAGVYPLIPAKGSVGASGDLAPLAHLSLTLLGEGKAR 164          
BLAST of FC877013 vs. ExPASy Swiss-Prot
Match: HUTH_VIBFM (Histidine ammonia-lyase OS=Vibrio fischeri (strain MJ11) GN=hutH PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.913e-16
Identity = 46/161 (28.57%), Postives = 92/161 (57.14%), Query Frame = 1
Query:  337 LTVAQVAAIATSSTNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRT--KNGGALQKELIRFLNAGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSK 813
            L++ Q+  ++   T + L  +A   +  S+D V + + +    YG+ TGFG  ++ R   K+   LQ+ ++    AGI          +  +  R  +++++N+L +GYSGIR  +++A+ +L+N  + PC+P +G++ ASGDL PL++++ +L G   ++
Sbjct:   11 LSLKQLREVSRHPTKLSLDPNALPDMLISADVVAQVIKEDKTVYGINTGFGLLANTRIAEKDLETLQRSIVLSHAAGI-------GEFMDDATVRLMIILKINSLSRGYSGIRPLVIDALIQLVNSEVYPCIPKKGSVGASGDLAPLAHMSTVLLGEGEAR 164          
BLAST of FC877013 vs. ExPASy Swiss-Prot
Match: HUTH_STAAW (Histidine ammonia-lyase OS=Staphylococcus aureus (strain MW2) GN=hutH PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.913e-16
Identity = 54/161 (33.54%), Postives = 79/161 (49.07%), Query Frame = 1
Query:  322 LGGETLTVAQVAAIATSSTNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTK--NGGALQKELIRFLNAGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTG 798
            L GETLT+  + +     + +E+ + A E VK S   V   +      YG+TTGFG  S  R        LQ  LIR    G+                   M++R+NTLL+G+SG   E++  +   +N  I P +P +G++ ASGDL PLS++A  L G
Sbjct:    5 LDGETLTIEDIKSFLQQQSKIEIIDDALERVKKSRAVVERIIENEETVYGITTGFGLFSDVRIDPTQYNELQVNLIRSHACGL-------GEPFSKEVALVMMILRLNTLLKGHSGATLELVRQLQFFINERIIPIIPQQGSLGASGDLAPLSHLALALIG 158          
BLAST of FC877013 vs. ExPASy Swiss-Prot
Match: HUTH_STAAT (Histidine ammonia-lyase OS=Staphylococcus aureus (strain USA300 / TCH1516) GN=hutH PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.913e-16
Identity = 54/161 (33.54%), Postives = 79/161 (49.07%), Query Frame = 1
Query:  322 LGGETLTVAQVAAIATSSTNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTK--NGGALQKELIRFLNAGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTG 798
            L GETLT+  + +     + +E+ + A E VK S   V   +      YG+TTGFG  S  R        LQ  LIR    G+                   M++R+NTLL+G+SG   E++  +   +N  I P +P +G++ ASGDL PLS++A  L G
Sbjct:    5 LDGETLTIEDIKSFLQQQSKIEIIDDALERVKKSRAVVERIIENEETVYGITTGFGLFSDVRIDPTQYNELQVNLIRSHACGL-------GEPFSKEVALVMMILRLNTLLKGHSGATLELVRQLQFFINERIIPIIPQQGSLGASGDLAPLSHLALALIG 158          
BLAST of FC877013 vs. ExPASy Swiss-Prot
Match: HUTH_STAAS (Histidine ammonia-lyase OS=Staphylococcus aureus (strain MSSA476) GN=hutH PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.913e-16
Identity = 54/161 (33.54%), Postives = 79/161 (49.07%), Query Frame = 1
Query:  322 LGGETLTVAQVAAIATSSTNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTK--NGGALQKELIRFLNAGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTG 798
            L GETLT+  + +     + +E+ + A E VK S   V   +      YG+TTGFG  S  R        LQ  LIR    G+                   M++R+NTLL+G+SG   E++  +   +N  I P +P +G++ ASGDL PLS++A  L G
Sbjct:    5 LDGETLTIEDIKSFLQQQSKIEIIDDALERVKKSRAVVERIIENEETVYGITTGFGLFSDVRIDPTQYNELQVNLIRSHACGL-------GEPFSKEVALVMMILRLNTLLKGHSGATLELVRQLQFFINERIIPIIPQQGSLGASGDLAPLSHLALALIG 158          
The following BLAST results are available for this feature:
BLAST of FC877013 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 227
Match NameE-valueIdentityDescription
HUTH_SALPA2.996e-1629.81Histidine ammonia-lyase OS=Salmonella paratyphi A ... [more]
HUTH_SALNS2.996e-1629.81Histidine ammonia-lyase OS=Salmonella newport (str... [more]
HUTH_SALHS2.996e-1629.81Histidine ammonia-lyase OS=Salmonella heidelberg (... [more]
HUTH_SALG22.996e-1629.81Histidine ammonia-lyase OS=Salmonella gallinarum (... [more]
HUTH_SALEP2.996e-1629.81Histidine ammonia-lyase OS=Salmonella enteritidis ... [more]
HUTH_SALDC2.996e-1629.81Histidine ammonia-lyase OS=Salmonella dublin (stra... [more]
HUTH_VIBFM3.913e-1628.57Histidine ammonia-lyase OS=Vibrio fischeri (strain... [more]
HUTH_STAAW3.913e-1633.54Histidine ammonia-lyase OS=Staphylococcus aureus (... [more]
HUTH_STAAT3.913e-1633.54Histidine ammonia-lyase OS=Staphylococcus aureus (... [more]
HUTH_STAAS3.913e-1633.54Histidine ammonia-lyase OS=Staphylococcus aureus (... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN3CD12RM1 EHR Citrus clementina cDNA clone KN0AAN3CD12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877013 ID=FC877013; Name=FC877013; organism=Citrus clementina; type=EST; length=820bp
GCACGAGGTAGACTTCAGAATTTCCTTTAGCTCATTCATTCTTCATCACT
CCCATTCATTCTTCTTCTTCTTCTTCTTCTTTCTACAGTTTTGGTATTTT
TTGTAATTGCAGTAACATTTACGTAAAACGATATGGAGATAGGTGCCACT
ACTGAGAATGGTCACCAGAACGGTGGCCTGGAGGGTTTGTGCAAGAATAA
CAATTACAATTACAGTTCTGGGGATGCGTTGAACTGGGGAGTGATGGCGG
AGACGTTGAAGGGGAGCCATTTGGAGGAAGTGAAGCGTATGGTGGCGGAG
TACAGGAAGCCGGTGGTCAACCTCGGTGGTGAGACGTTGACCGTAGCACA
GGTGGCTGCCATTGCCACGTCCTCTACGAATGTGGAGCTGTCGGAATCTG
CCAGGGAAGGCGTCAAGGCCAGCAGTGATTGGGTGATGGAGAGCATGAAT
AAGGGTACCGACAGTTACGGCGTTACCACTGGCTTTGGTGCCACTTCTCA
TCGGAGAACCAAGAACGGCGGTGCTCTTCAGAAGGAGCTCATTAGATTTT
TGAACGCTGGAATCTTTGGAAACGGAACAGAGTCATCTCACACGCTACCT
CACTCAGCAACAAGGGCAGCCATGCTTGTGAGGGTTAACACTCTTCTCCA
GGGCTACTCCGGCATCCGATTTGAAATCCTGGAAGCGATCACAAAGCTGC
TCAATCACAACATCACTCCATGCCTCCCTCTTCGCGGCACAATCACTGCT
TCAGGGGATCTGGTTCCTCTTTCCTACATTGCCGGACTGCTCACCGGCCG
GCCCAATTCTAAGGCCACCG
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