FC877013

Overview
NameFC877013
Unique NameFC877013
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length820
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC877013 vs. ExPASy Swiss-Prot
Match: HUTH1_FUSNN (Histidine ammonia-lyase 1 OS=Fusobacterium nucleatum subsp. nucleatum GN=hutH1 PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 8.718e-16
Identity = 49/161 (30.43%), Postives = 87/161 (54.04%), Query Frame = 1
Query:  322 LGGETLTVAQVAAIATSSTNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFG--ATSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTG 798
            LG + +T+  +  +      V +SE A E +  +   V + + +G  SYG+TTGFG  A      +  G LQK ++   +  +        + LP    +  +L+R   L +GYSG R  ++E + +LLN ++TP +P +G++ +SGDL PL++++ +L G
Sbjct:   10 LGSKNITLEDLINVTRKGYKVSISEEAYEKIDKARALVDKYVEEGKVSYGITTGFGKFAEVSISKEQTGQLQKNIVMSHSCNV-------GNPLPIDIAKGIVLLRAVNLAKGYSGARRIVIEKLVELLNKDVTPWIPEKGSVGSSGDLSPLAHMSLVLIG 163          
BLAST of FC877013 vs. ExPASy Swiss-Prot
Match: HUTH_VIBVY (Histidine ammonia-lyase OS=Vibrio vulnificus (strain YJ016) GN=hutH PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.139e-15
Identity = 46/161 (28.57%), Postives = 89/161 (55.28%), Query Frame = 1
Query:  337 LTVAQVAAIATSSTNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRT--KNGGALQKELIRFLNAGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSK 813
            L++ Q+  ++ S  N+ L  SA   ++ S+  V   + +    YG+ TGFG  ++ R   ++   LQ+ ++    AGI          +     R  M++++N+L +GYSGIR  +++ +  L+N  + PC+P +G++ ASGDL PL++++ +L G   ++
Sbjct:   13 LSLNQLRQVSRSPINLSLDASAIPAIEDSTQVVERVIAEDRTVYGINTGFGLLANTRIAPEDLETLQRSIVLSHAAGI-------GEFMADETVRLMMVLKINSLSRGYSGIRLNVIQMLIDLVNAQVYPCVPQKGSVGASGDLAPLAHMSTVLLGEGQAR 166          
BLAST of FC877013 vs. ExPASy Swiss-Prot
Match: HUTH_PSESM (Histidine ammonia-lyase OS=Pseudomonas syringae pv. tomato GN=hutH PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.139e-15
Identity = 51/168 (30.36%), Postives = 91/168 (54.17%), Query Frame = 1
Query:  316 VNLGGETLTVAQVAAIATSSTNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKNGGA--LQKELIRFLNAGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSK 813
            +NL    LT+AQ+ AI     ++ L  SA + +  S   V   + +   +YG+ TGFG  +  R  +     LQ+ L+    AG+          +     R  M+++VN+L +G+SGIR  +++A+  L+N  + P +PL+G++ ASGDL PL++++ +L G   ++
Sbjct:    9 LNLIPGQLTLAQLRAIHQQPVSLTLDSSANQQIDDSVACVERILAENRTAYGINTGFGLLASTRIASEDLENLQRSLVLSHAAGV-------GQPISDDLVRLIMVLKVNSLSRGFSGIRRVVIDALIALINAEVYPHIPLKGSVGASGDLAPLAHMSLVLLGEGKAR 169          
BLAST of FC877013 vs. ExPASy Swiss-Prot
Match: HUTH_PSEAE (Histidine ammonia-lyase OS=Pseudomonas aeruginosa GN=hutH PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.139e-15
Identity = 49/161 (30.43%), Postives = 87/161 (54.04%), Query Frame = 1
Query:  337 LTVAQVAAIATSSTNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKNGGA--LQKELIRFLNAGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSK 813
            LT+A +     +   + L  SA   + AS   V   + +G  +YG+ TGFG  +  R        LQ+ ++    AG+          L  +  R  ML++VN+L +G+SGIR ++++A+  L+N  + P +PL+G++ ASGDL PL++++ +L G   ++
Sbjct:   10 LTLADLRQAYLAPVRLSLDPSADAPIAASVACVENIIAEGRTAYGINTGFGLLASTRISPADLEKLQRSIVLSHAAGV-------GEALDDAMVRLVMLLKVNSLARGFSGIRRKVIDALIALINAEVYPHIPLKGSVGASGDLAPLAHMSLVLIGESRAR 163          
BLAST of FC877013 vs. ExPASy Swiss-Prot
Match: HUTH_PSEA8 (Histidine ammonia-lyase OS=Pseudomonas aeruginosa (strain LESB58) GN=hutH PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.139e-15
Identity = 49/161 (30.43%), Postives = 87/161 (54.04%), Query Frame = 1
Query:  337 LTVAQVAAIATSSTNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKNGGA--LQKELIRFLNAGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSK 813
            LT+A +     +   + L  SA   + AS   V   + +G  +YG+ TGFG  +  R        LQ+ ++    AG+          L  +  R  ML++VN+L +G+SGIR ++++A+  L+N  + P +PL+G++ ASGDL PL++++ +L G   ++
Sbjct:   10 LTLADLRQAYLAPVRLSLDPSADAPIAASVACVENIIAEGRTAYGINTGFGLLASTRISPADLEKLQRSIVLSHAAGV-------GEALDDAMVRLVMLLKVNSLARGFSGIRRKVIDALIALINAEVYPHIPLKGSVGASGDLAPLAHMSLVLIGESRAR 163          
BLAST of FC877013 vs. ExPASy Swiss-Prot
Match: HUTH_HUMAN (Histidine ammonia-lyase OS=Homo sapiens GN=HAL PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.139e-15
Identity = 62/213 (29.11%), Postives = 106/213 (49.77%), Query Frame = 1
Query:  178 LEGLCKNNNYN--YSSGDALNWGVMAETLKGSHLEEVKRMVAEYRKP--VVNLGGETLTVAQVAAIATSSTNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFG--ATSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTG 798
            LE   +NN +      GDA++   +    +G +L       ++YR+P   + L G+ LT   +  +      ++L+ +A + V+ S + +   + + T  YG+TTGFG  A +         LQ  L+R  ++G+          L     R  + +R+N L +GYSGI  E L+ + ++ N +  P +P +GT+ ASGDL PLS++A  L G
Sbjct:   70 LEVALENNEFVEVVIEGDAMSPDFIPSQPEGVYL------YSKYREPEKYIELDGDRLTTEDLVNLGKGRYKIKLTPTAEKRVQKSREVIDSIIKEKTVVYGITTGFGKFARTVIPINKLQELQVNLVRSHSSGV-------GKPLSPERCRMLLALRINVLAKGYSGISLETLKQVIEMFNASCLPYVPEKGTVGASGDLAPLSHLALGLVG 269          
BLAST of FC877013 vs. ExPASy Swiss-Prot
Match: HUTH_SHEON (Histidine ammonia-lyase OS=Shewanella oneidensis GN=hutH PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.487e-15
Identity = 44/156 (28.21%), Postives = 87/156 (55.77%), Query Frame = 1
Query:  334 TLTVAQVAAIATSSTNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGI-FGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTG 798
            +L++AQ+  I+     +EL+  A   +  S+  V + +++G   YG+ TGFG  ++ +      +  E ++ L   I   +   +   +  +  R  M++++N+L +G+SGIR E++  +  L+N  + PC+P +G++ ASGDL PL+++   L G
Sbjct:   13 SLSLAQLREISRHKLTLELAPEAINDINISAQIVQKVLDEGRTVYGINTGFGLLANTK------IAPEDLQLLQRSIVLSHAAGTGQYMQDATVRLMMVLKINSLSRGFSGIRLEVINFLISLVNAEVYPCVPEKGSVGASGDLAPLAHMCLPLLG 162          
BLAST of FC877013 vs. ExPASy Swiss-Prot
Match: HUTH_ENT38 (Histidine ammonia-lyase OS=Enterobacter sp. (strain 638) GN=hutH PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.487e-15
Identity = 49/161 (30.43%), Postives = 88/161 (54.66%), Query Frame = 1
Query:  337 LTVAQVAAIATSSTNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRR--TKNGGALQKELIRFLNAGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSK 813
            LT+ Q+  +    T + L E+A E +  S   V   + +   +YG+ TGFG  +  R  T +   LQ+ L+    AG+          L  +  R  M++++N+L +G+SGIR  +++A+  L+N  + P +P +G++ ASGDL PL++++ LL G   ++
Sbjct:   11 LTLKQLRGVWRHPTPLVLDENAHEAINQSVACVEAIVAEDRTAYGINTGFGLLAQTRIATHDLENLQRSLVLSHAAGV-------GAPLDDNMVRLMMVLKINSLARGFSGIRLSVIQALIALVNAQVYPWIPSKGSVGASGDLAPLAHMSLLLLGEGKAR 164          
BLAST of FC877013 vs. ExPASy Swiss-Prot
Match: HUTH_BURA4 (Histidine ammonia-lyase OS=Burkholderia ambifaria (strain MC40-6) GN=hutH PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.487e-15
Identity = 48/156 (30.77%), Postives = 87/156 (55.77%), Query Frame = 1
Query:  337 LTVAQVAAIATSSTNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFG--ATSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTG 798
            LT+ Q+  IA     + L  ++   + A +  V +   KG  +YG+ TGFG  A++H        LQK L+     G+          +  S+ R  M +++++L +G+SGIR E+++A+  L N ++ P +P++G++ ASGDL PL++++ +L G
Sbjct:    9 LTLPQLRKIAREPVQLTLDPASFAKIDAGAKAVADIAAKGEPAYGINTGFGRLASTHIPHDQLELLQKNLVLSHAVGV-------GEPMARSSVRLLMALKLSSLGRGHSGIRREVMDALITLFNADVLPLIPVKGSVGASGDLAPLAHMSAVLLG 157          
BLAST of FC877013 vs. ExPASy Swiss-Prot
Match: HUTH_STRCO (Histidine ammonia-lyase OS=Streptomyces coelicolor GN=hutH PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.942e-15
Identity = 55/168 (32.74%), Postives = 86/168 (51.19%), Query Frame = 1
Query:  316 VNLGGETLTVAQVAAIATSSTNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGA--TSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSK 813
            V +G   +T + V A+A +   +ELSE A   + A+   V     K    YGV+TGFGA  T H   +  G LQ+ ++R   AG+          +     RA M +R+ T+  G +G+R E+ + +  +LN  ITP +   G++  SGDL PLS+ A  L G  +++
Sbjct:    4 VVVGTSGVTASDVLAVARAGARIELSEEAVAALAAARSVVDALAAKPDPVYGVSTGFGALATRHISPELRGRLQRNIVRSHAAGM-------GPRVEREVVRALMFLRLKTVCSGRTGVRPEVAQTMADVLNAGITPVVHEYGSLGCSGDLAPLSHCALTLMGEGDAE 164          
The following BLAST results are available for this feature:
BLAST of FC877013 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 227
Match NameE-valueIdentityDescription
HUTH1_FUSNN8.718e-1630.43Histidine ammonia-lyase 1 OS=Fusobacterium nucleat... [more]
HUTH_VIBVY1.139e-1528.57Histidine ammonia-lyase OS=Vibrio vulnificus (stra... [more]
HUTH_PSESM1.139e-1530.36Histidine ammonia-lyase OS=Pseudomonas syringae pv... [more]
HUTH_PSEAE1.139e-1530.43Histidine ammonia-lyase OS=Pseudomonas aeruginosa ... [more]
HUTH_PSEA81.139e-1530.43Histidine ammonia-lyase OS=Pseudomonas aeruginosa ... [more]
HUTH_HUMAN1.139e-1529.11Histidine ammonia-lyase OS=Homo sapiens GN=HAL PE=... [more]
HUTH_SHEON1.487e-1528.21Histidine ammonia-lyase OS=Shewanella oneidensis G... [more]
HUTH_ENT381.487e-1530.43Histidine ammonia-lyase OS=Enterobacter sp. (strai... [more]
HUTH_BURA41.487e-1530.77Histidine ammonia-lyase OS=Burkholderia ambifaria ... [more]
HUTH_STRCO1.942e-1532.74Histidine ammonia-lyase OS=Streptomyces coelicolor... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAN3CD12RM1 EHR Citrus clementina cDNA clone KN0AAN3CD12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877013 ID=FC877013; Name=FC877013; organism=Citrus clementina; type=EST; length=820bp
GCACGAGGTAGACTTCAGAATTTCCTTTAGCTCATTCATTCTTCATCACT
CCCATTCATTCTTCTTCTTCTTCTTCTTCTTTCTACAGTTTTGGTATTTT
TTGTAATTGCAGTAACATTTACGTAAAACGATATGGAGATAGGTGCCACT
ACTGAGAATGGTCACCAGAACGGTGGCCTGGAGGGTTTGTGCAAGAATAA
CAATTACAATTACAGTTCTGGGGATGCGTTGAACTGGGGAGTGATGGCGG
AGACGTTGAAGGGGAGCCATTTGGAGGAAGTGAAGCGTATGGTGGCGGAG
TACAGGAAGCCGGTGGTCAACCTCGGTGGTGAGACGTTGACCGTAGCACA
GGTGGCTGCCATTGCCACGTCCTCTACGAATGTGGAGCTGTCGGAATCTG
CCAGGGAAGGCGTCAAGGCCAGCAGTGATTGGGTGATGGAGAGCATGAAT
AAGGGTACCGACAGTTACGGCGTTACCACTGGCTTTGGTGCCACTTCTCA
TCGGAGAACCAAGAACGGCGGTGCTCTTCAGAAGGAGCTCATTAGATTTT
TGAACGCTGGAATCTTTGGAAACGGAACAGAGTCATCTCACACGCTACCT
CACTCAGCAACAAGGGCAGCCATGCTTGTGAGGGTTAACACTCTTCTCCA
GGGCTACTCCGGCATCCGATTTGAAATCCTGGAAGCGATCACAAAGCTGC
TCAATCACAACATCACTCCATGCCTCCCTCTTCGCGGCACAATCACTGCT
TCAGGGGATCTGGTTCCTCTTTCCTACATTGCCGGACTGCTCACCGGCCG
GCCCAATTCTAAGGCCACCG
back to top