FC877013

Overview
NameFC877013
Unique NameFC877013
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length820
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC877013 vs. ExPASy Swiss-Prot
Match: HUTH_ALKOO (Histidine ammonia-lyase OS=Alkaliphilus oremlandii (strain OhILAs) GN=hutH PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.623e-17
Identity = 55/163 (33.74%), Postives = 84/163 (51.53%), Query Frame = 1
Query:  316 VNLGGETLTVAQVAAIATSSTNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKNGG--ALQKELIRFLNAGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTG 798
            + + GE LT+  +  +  +   +ELSE A+  V+ +   V   + +    YG+TTGFG  S          ALQ+ LI     G+        + L     R  ML+R N L +GYSGIR E L  + ++LN  + P +P +G++ ASGDL PLS++  +L G
Sbjct:    4 IMIDGEQLTLQDIIHVTRNFYEIELSEDAKNRVRNNRKVVDRYVEEEKVVYGITTGFGKFSDVVISKSETEALQRNLIISHACGV-------GNPLEEDVVRGIMLLRANALSKGYSGIRLETLSTLIEMLNKGVHPVIPEKGSLGASGDLAPLSHMVLVLIG 159          
BLAST of FC877013 vs. ExPASy Swiss-Prot
Match: HUTH_STAS1 (Histidine ammonia-lyase OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=hutH PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 7.885e-17
Identity = 55/166 (33.13%), Postives = 80/166 (48.19%), Query Frame = 1
Query:  316 VNLGGETLTVAQVAAIATSSTNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKNG--GALQKELIRFLNAGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPN 807
            + L GE LT+  +         VE+++ A E VK S   V   +      YG+TTGFG  S  R        LQ  LIR    G+                   M++R+NTLL+G+SG    ++E +   +N+ I P +P +G++ ASGDL PLS++A  L G  N
Sbjct:    3 LQLNGEMLTINDIKTFLNKEDTVEVTQEALERVKKSRQTVEHIIENKETIYGITTGFGLFSDVRIDKDEYNQLQVNLIRSHACGV-------GKPFSEEVALVMMVLRLNTLLKGHSGTTVALVEQLVYYINNRIVPVIPQQGSLGASGDLAPLSHLALALIGEGN 161          
BLAST of FC877013 vs. ExPASy Swiss-Prot
Match: HUTH_PSEFS (Histidine ammonia-lyase OS=Pseudomonas fluorescens (strain SBW25) GN=hutH PE=3 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 7.885e-17
Identity = 51/168 (30.36%), Postives = 95/168 (56.55%), Query Frame = 1
Query:  316 VNLGGETLTVAQVAAIATSSTNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKNGGA--LQKELIRFLNAGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSK 813
            +NL    L++AQ+ AI      + L +SA   ++AS   V + + +   +YG+ TGFG  +  R  +     LQ+ L+    AG+          +  +  R  M+++VN+L +G+SGIR ++++A+  L+N  + P +PL+G++ ASGDL PL++++ +L G   ++
Sbjct:    6 LNLIPGQLSLAQLRAIYQQPVTLRLDDSATAQIEASVACVEQILAENRTAYGINTGFGLLASTRIASEDLENLQRSLVLSHAAGV-------GEPISDALVRLVMVLKVNSLSRGFSGIRRQVIDALIALINAEVYPHIPLKGSVGASGDLAPLAHMSLVLLGEGKAR 166          
BLAST of FC877013 vs. ExPASy Swiss-Prot
Match: HUTH_BURS3 (Histidine ammonia-lyase OS=Burkholderia sp. (strain 383) GN=hutH PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 7.885e-17
Identity = 50/156 (32.05%), Postives = 89/156 (57.05%), Query Frame = 1
Query:  337 LTVAQVAAIATSSTNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFG--ATSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTG 798
            LT+ Q+  IA  S  + L  ++   + A +  V +   KG  +YG+ TGFG  A++H        LQK L+     G+          +  S+ R  M +++++L +G+SGIR E+++A+ KL N ++ P +P++G++ ASGDL PL++++ +L G
Sbjct:    9 LTLPQLRQIARESVQLTLDPASFAKIDAGAKAVADIAAKGEPAYGINTGFGRLASTHIPHDQLELLQKNLVLSHAVGV-------GEPMARSSVRLLMALKLSSLGRGHSGIRREVMDALIKLFNADVLPLIPVKGSVGASGDLAPLAHMSAVLLG 157          
BLAST of FC877013 vs. ExPASy Swiss-Prot
Match: HUTH_YERPS (Histidine ammonia-lyase OS=Yersinia pseudotuberculosis GN=hutH PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.345e-16
Identity = 50/161 (31.06%), Postives = 93/161 (57.76%), Query Frame = 1
Query:  337 LTVAQVAAIATSSTNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRR--TKNGGALQKELIRFLNAGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSK 813
            +T+A +  I     ++ L ESA   ++ S D V   + +   +YG+ TGFG  +  R  T++   LQ+ ++    AG+ G   + +        R  M++++N+L +G+SGIR E+++A+  L+N  + P +PL+G++ ASGDL PL++++ LL G   ++
Sbjct:   11 MTLADLRHIYQHPVHITLDESAYVPIQQSVDCVQAILAEQRTAYGINTGFGLLASTRIATEDLENLQRSIVLSHAAGV-GEANDDA------IVRLIMVLKINSLARGFSGIRLEVIQALITLVNAGVYPHIPLKGSVGASGDLAPLAHMSLLLLGEGKAR 164          
BLAST of FC877013 vs. ExPASy Swiss-Prot
Match: HUTH_YERPE (Histidine ammonia-lyase OS=Yersinia pestis GN=hutH PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.345e-16
Identity = 50/161 (31.06%), Postives = 93/161 (57.76%), Query Frame = 1
Query:  337 LTVAQVAAIATSSTNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRR--TKNGGALQKELIRFLNAGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSK 813
            +T+A +  I     ++ L ESA   ++ S D V   + +   +YG+ TGFG  +  R  T++   LQ+ ++    AG+ G   + +        R  M++++N+L +G+SGIR E+++A+  L+N  + P +PL+G++ ASGDL PL++++ LL G   ++
Sbjct:   11 MTLADLRHIYQHPVHITLDESAYVPIQQSVDCVQAILAEQRTAYGINTGFGLLASTRIATEDLENLQRSIVLSHAAGV-GEANDDA------IVRLIMVLKINSLARGFSGIRLEVIQALITLVNAGVYPHIPLKGSVGASGDLAPLAHMSLLLLGEGKAR 164          
BLAST of FC877013 vs. ExPASy Swiss-Prot
Match: HUTH_YERE8 (Histidine ammonia-lyase OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=hutH PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.345e-16
Identity = 50/161 (31.06%), Postives = 93/161 (57.76%), Query Frame = 1
Query:  337 LTVAQVAAIATSSTNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRR--TKNGGALQKELIRFLNAGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSK 813
            +T+A +  I      + L ESA   ++ S D V + + +   +YG+ TGFG  +  R  T++   LQ+ ++    AG+   G  +   +     R  M++++N+L +G+SGIR E+++A+  L+N  + P +PL+G++ ASGDL PL++++ LL G   ++
Sbjct:    8 MTLADLRHIYQHPVKITLDESAYAPIQQSVDCVQKILAEKRTAYGINTGFGLLASTRIATEDLENLQRSIVLSHAAGV---GEPNDDAI----VRLIMVLKINSLARGFSGIRLEVIQALITLVNAQVYPHIPLKGSVGASGDLAPLAHMSLLLLGEGKAR 161          
BLAST of FC877013 vs. ExPASy Swiss-Prot
Match: HUTH_SHEPW (Histidine ammonia-lyase OS=Shewanella piezotolerans (strain WP3 / JCM 13877) GN=hutH PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.345e-16
Identity = 45/151 (29.80%), Postives = 86/151 (56.95%), Query Frame = 1
Query:  334 TLTVAQVAAIATSSTNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKNGGA--LQKELIRFLNAGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYI 780
            +LT+ Q+  I+     +EL++SA   +  S+  V + +++G   YG+ TGFG  ++ +        LQ+ ++    AG       +   +  +  R  M++++N+L +G+SGIR E++  +  L+N  + PC+P +G++ ASGDL PLS++
Sbjct:   10 SLTLKQIREISRGKVTLELADSAIADINTSAGLVQQVLDEGRTVYGINTGFGLLANTKIAADDLQLLQRSIVLSHAAG-------TGQYMQDATVRLMMVLKINSLSRGFSGIRLEVINFLIALVNAEVYPCVPEKGSVGASGDLAPLSHM 153          
BLAST of FC877013 vs. ExPASy Swiss-Prot
Match: HUTH_GEOSW (Histidine ammonia-lyase OS=Geobacillus sp. (strain WCH70) GN=hutH PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.345e-16
Identity = 59/164 (35.98%), Postives = 83/164 (50.61%), Query Frame = 1
Query:  313 VVNLGGETLTVAQVAAIATSSTNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKNGGA--LQKELIRFLNAGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTG 798
            +V L G TLT+ +V  +      V  S+ + E V+ S   V E +      YG+ TGFG  S      G    LQ  LI     G+           P   +RA +L+R N LL+GYSG+R  ++E +  LLN  I P +P +G++ ASGDL PLS++A  L G
Sbjct:    1 MVVLTGHTLTLEEVKRVLYRDELVIASKESMEAVERSRKAVEEIVANKNVVYGINTGFGKFSDVLIAAGDVEELQWNLIHSHACGV-------GEPFPEEVSRAMLLLRANALLKGYSGVRPIVIERLLDLLNAKIHPVIPQQGSLGASGDLAPLSHLALALLG 157          
BLAST of FC877013 vs. ExPASy Swiss-Prot
Match: HUTH_GEOKA (Histidine ammonia-lyase OS=Geobacillus kaustophilus GN=hutH PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.345e-16
Identity = 53/162 (32.72%), Postives = 83/162 (51.23%), Query Frame = 1
Query:  313 VVNLGGETLTVAQVAAIATSSTNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTG 798
            ++ L G TLT+ +V  +      V   E +   V+ S   V ++++ G   YGV TGFG  +  R + G  L++  I  L +     G            RA +L+R N LL+GYSG+R  ++E +   LN  I P +P +G++ ASGDL PL+++A    G
Sbjct:    1 MIVLTGHTLTIDEVRRVVYERERVAADEESMRAVEKSRAAVEQAISNGRTIYGVNTGFGKLADVRIE-GSDLEQLQINLLRSHACAVG----EPFAEDVVRAMLLLRANALLKGYSGVRPAVIEQLLAFLNTGIHPIVPQQGSLGASGDLAPLAHLALAFAG 157          
The following BLAST results are available for this feature:
BLAST of FC877013 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 227
Match NameE-valueIdentityDescription
HUTH_ALKOO4.623e-1733.74Histidine ammonia-lyase OS=Alkaliphilus oremlandii... [more]
HUTH_STAS17.885e-1733.13Histidine ammonia-lyase OS=Staphylococcus saprophy... [more]
HUTH_PSEFS7.885e-1730.36Histidine ammonia-lyase OS=Pseudomonas fluorescens... [more]
HUTH_BURS37.885e-1732.05Histidine ammonia-lyase OS=Burkholderia sp. (strai... [more]
HUTH_YERPS1.345e-1631.06Histidine ammonia-lyase OS=Yersinia pseudotubercul... [more]
HUTH_YERPE1.345e-1631.06Histidine ammonia-lyase OS=Yersinia pestis GN=hutH... [more]
HUTH_YERE81.345e-1631.06Histidine ammonia-lyase OS=Yersinia enterocolitica... [more]
HUTH_SHEPW1.345e-1629.80Histidine ammonia-lyase OS=Shewanella piezotoleran... [more]
HUTH_GEOSW1.345e-1635.98Histidine ammonia-lyase OS=Geobacillus sp. (strain... [more]
HUTH_GEOKA1.345e-1632.72Histidine ammonia-lyase OS=Geobacillus kaustophilu... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN3CD12RM1 EHR Citrus clementina cDNA clone KN0AAN3CD12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877013 ID=FC877013; Name=FC877013; organism=Citrus clementina; type=EST; length=820bp
GCACGAGGTAGACTTCAGAATTTCCTTTAGCTCATTCATTCTTCATCACT
CCCATTCATTCTTCTTCTTCTTCTTCTTCTTTCTACAGTTTTGGTATTTT
TTGTAATTGCAGTAACATTTACGTAAAACGATATGGAGATAGGTGCCACT
ACTGAGAATGGTCACCAGAACGGTGGCCTGGAGGGTTTGTGCAAGAATAA
CAATTACAATTACAGTTCTGGGGATGCGTTGAACTGGGGAGTGATGGCGG
AGACGTTGAAGGGGAGCCATTTGGAGGAAGTGAAGCGTATGGTGGCGGAG
TACAGGAAGCCGGTGGTCAACCTCGGTGGTGAGACGTTGACCGTAGCACA
GGTGGCTGCCATTGCCACGTCCTCTACGAATGTGGAGCTGTCGGAATCTG
CCAGGGAAGGCGTCAAGGCCAGCAGTGATTGGGTGATGGAGAGCATGAAT
AAGGGTACCGACAGTTACGGCGTTACCACTGGCTTTGGTGCCACTTCTCA
TCGGAGAACCAAGAACGGCGGTGCTCTTCAGAAGGAGCTCATTAGATTTT
TGAACGCTGGAATCTTTGGAAACGGAACAGAGTCATCTCACACGCTACCT
CACTCAGCAACAAGGGCAGCCATGCTTGTGAGGGTTAACACTCTTCTCCA
GGGCTACTCCGGCATCCGATTTGAAATCCTGGAAGCGATCACAAAGCTGC
TCAATCACAACATCACTCCATGCCTCCCTCTTCGCGGCACAATCACTGCT
TCAGGGGATCTGGTTCCTCTTTCCTACATTGCCGGACTGCTCACCGGCCG
GCCCAATTCTAAGGCCACCG
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