FC877019

Overview
NameFC877019
Unique NameFC877019
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length598
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC877019 vs. ExPASy Swiss-Prot
Match: MYL4_MOUSE (Myosin light chain 4 OS=Mus musculus GN=Myl4 PE=2 SV=3)

HSP 1 Score: 70.4774 bits (171), Expect = 7.378e-12
Identity = 44/130 (33.85%), Postives = 71/130 (54.62%), Query Frame = 1
Query:    1 GDGCITTKELGTAVRCTAGVTPLRRSSRTVINEVDAD--GNGTIGFPEFLNLMAR--KMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMA 378
            G+  IT  + G  +R   G  P       V+ +   +   + T+ F  FL ++    + K+  + E+  E  RVFDK+ NG +  AELRHV+  LGEK+++ EV++++     D +G INYE FVK +M+
Sbjct:   65 GEMKITYGQCGDVLRAL-GQNPTNAEVLRVLGKPKPEEMSSKTLDFEMFLPILQHISRNKEQGTYEDFVEGLRVFDKESNGTVMGAELRHVLATLGEKMSEAEVEQLL-SGQEDANGCINYEAFVKHIMS 192          
BLAST of FC877019 vs. ExPASy Swiss-Prot
Match: CML32_ARATH (Probable calcium-binding protein CML32 OS=Arabidopsis thaliana GN=CML32 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 7.378e-12
Identity = 46/129 (35.66%), Postives = 70/129 (54.26%), Query Frame = 1
Query:    4 DGCITTKELGTAVRCTAGVTPLRRSSR--TVINEVDADGNGTIGFPEFLNLMARKMKDTDSEEEL--KEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMA 378
            DG I+  E   A+R     +P   S     +  E+D DG+  I   E+ + +    +    +E++  KEAF ++D D +G ISA+E+  V+  LGEK T  E   M+R  D DGDG +++EEF K MM+
Sbjct:   15 DGKISWDEFAEAIRA---FSPSITSEEIDNMFREIDVDGDNQIDVAEYASCLMLGGEGNKEDEDIVMKEAFDLYDIDGDGKISASEIHVVLKRLGEKQTIAECIAMVRAVDADGDGFVSFEEF-KTMMS 139          
BLAST of FC877019 vs. ExPASy Swiss-Prot
Match: CML21_ORYSJ (Probable calcium-binding protein CML21 OS=Oryza sativa subsp. japonica GN=CML21 PE=2 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 7.378e-12
Identity = 53/144 (36.81%), Postives = 74/144 (51.39%), Query Frame = 1
Query:    1 GDGCITTKELGTAVRCTAGVT----PLRRSSRTVINEVDADGNGTIGFPEFLNL------------MARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLG--EKLTDEEVDEMIREADVDGDGQINYEEFVKVMMA 378
            GDG IT  EL  A+ C  G      P   +   V+    A G   + F EF  L            +A    + + E +++EAF VFD+D +G+ISAAEL+ V++ +G  E      V +MI  AD D DG+++YEEF K MMA
Sbjct:   53 GDGVITPAELSGAL-CRLGARGEAPPAAAALDAVVAAYIAPGMAGLRFAEFEALHAELAGLGGRQAVAAAEAEEEKEADMREAFGVFDEDGDGYISAAELQAVLSRMGLPEAACMARVRDMIAAADRDSDGRVDYEEF-KAMMA 194          
BLAST of FC877019 vs. ExPASy Swiss-Prot
Match: CML17_ORYSJ (Probable calcium-binding protein CML17 OS=Oryza sativa subsp. japonica GN=CML17 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 7.378e-12
Identity = 48/138 (34.78%), Postives = 73/138 (52.90%), Query Frame = 1
Query:    1 GDGCITTKELGTAVRCTAGVTPLRRSSRTVINEVDADGNGTIGFPEFLNLMARKMK------------DTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEK--LTDEEVDEMIREADVDGDGQINYEEFVKVM 372
            GDG IT +EL  ++    G+   R      I  +DA+G+G +   EF  L    M+            D D E  ++EAF VFD++ +GFI+  EL  V+ +LG K   T E+   MI + D DGDG++++ EF ++M
Sbjct:   20 GDGRITREELTESLE-RLGMPVHREELAATIARIDANGDGCVDMDEFTQLYETVMRVDGGGGGGGGACDVD-EASMREAFDVFDRNGDGFITVDELGAVLASLGIKQGRTAEDCGRMIGQVDRDGDGRVDFLEFKQMM 155          
BLAST of FC877019 vs. ExPASy Swiss-Prot
Match: CDPKN_ARATH (Calcium-dependent protein kinase 23 OS=Arabidopsis thaliana GN=CPK23 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 7.378e-12
Identity = 49/128 (38.28%), Postives = 72/128 (56.25%), Query Frame = 1
Query:    7 GCITTKELGTAVRCTAGVTPLR-RSSRTVINEV----DADGNGTIGFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDE-EVDEMIREADVDGDGQINYEEFVKVM 372
            G IT ++L T      G++ LR R S T + ++    D DGNGTI + EF++    + K    +E + +AF+  DKD+NG I+  EL   M   G  + DE  + E+I E D D DG+IN+EEF  +M
Sbjct:  387 GTITYEQLQT------GLSRLRSRLSETEVQQLVEASDVDGNGTIDYYEFISATMHRYK-LHHDEHVHKAFQHLDKDKNGHITRDELESAMKEYG--MGDEASIKEVISEVDTDNDGKINFEEFRAMM 505          
BLAST of FC877019 vs. ExPASy Swiss-Prot
Match: CANB_ASHGO (Calcineurin subunit B OS=Ashbya gossypii GN=CNB1 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 7.378e-12
Identity = 38/96 (39.58%), Postives = 62/96 (64.58%), Query Frame = 1
Query:   88 VINEVDADGNGTIGFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVM-TNLGEKLTDEE----VDEMIREADVDGDGQINYEEF 360
            ++   DAD +G + F EF++ ++     +D EE+L+ AF+++D D++G+IS  EL  V+   +G  L DE+    VD  I E DVDGDG++++EEF
Sbjct:   61 IMEVFDADNSGDVDFQEFISGLSVFSGRSDKEEKLRFAFKIYDIDKDGYISNGELFIVLKIMVGNNLEDEQLQQVVDRTIMENDVDGDGKLSFEEF 156          
BLAST of FC877019 vs. ExPASy Swiss-Prot
Match: CABP7_RAT (Calcium-binding protein 7 OS=Rattus norvegicus GN=Cabp7 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 7.378e-12
Identity = 33/69 (47.83%), Postives = 49/69 (71.01%), Query Frame = 1
Query:  175 DSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 381
            D  EE++EAF+VFD+D NGFIS  EL   M +LG    + E++ +I+  D+DGDGQ+++EEFV ++  K
Sbjct:   33 DELEEIREAFKVFDRDGNGFISKQELGTAMRSLGYMPNEVELEVIIQRLDMDGDGQVDFEEFVTLLGPK 101          
BLAST of FC877019 vs. ExPASy Swiss-Prot
Match: CABP7_PAPAN (Calcium-binding protein 7 OS=Papio anubis GN=CABP7 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 7.378e-12
Identity = 33/69 (47.83%), Postives = 49/69 (71.01%), Query Frame = 1
Query:  175 DSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 381
            D  EE++EAF+VFD+D NGFIS  EL   M +LG    + E++ +I+  D+DGDGQ+++EEFV ++  K
Sbjct:   33 DELEEIREAFKVFDRDGNGFISKQELGTAMRSLGYMPNEVELEVIIQRLDMDGDGQVDFEEFVTLLGPK 101          
BLAST of FC877019 vs. ExPASy Swiss-Prot
Match: CABP7_MOUSE (Calcium-binding protein 7 OS=Mus musculus GN=Cabp7 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 7.378e-12
Identity = 33/69 (47.83%), Postives = 49/69 (71.01%), Query Frame = 1
Query:  175 DSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 381
            D  EE++EAF+VFD+D NGFIS  EL   M +LG    + E++ +I+  D+DGDGQ+++EEFV ++  K
Sbjct:   33 DELEEIREAFKVFDRDGNGFISKQELGTAMRSLGYMPNEVELEVIIQRLDMDGDGQVDFEEFVTLLGPK 101          
BLAST of FC877019 vs. ExPASy Swiss-Prot
Match: CABP7_HUMAN (Calcium-binding protein 7 OS=Homo sapiens GN=CABP7 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 7.378e-12
Identity = 33/69 (47.83%), Postives = 49/69 (71.01%), Query Frame = 1
Query:  175 DSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 381
            D  EE++EAF+VFD+D NGFIS  EL   M +LG    + E++ +I+  D+DGDGQ+++EEFV ++  K
Sbjct:   33 DELEEIREAFKVFDRDGNGFISKQELGTAMRSLGYMPNEVELEVIIQRLDMDGDGQVDFEEFVTLLGPK 101          
The following BLAST results are available for this feature:
BLAST of FC877019 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 381
Match NameE-valueIdentityDescription
MYL4_MOUSE7.378e-1233.85Myosin light chain 4 OS=Mus musculus GN=Myl4 PE=2 ... [more]
CML32_ARATH7.378e-1235.66Probable calcium-binding protein CML32 OS=Arabidop... [more]
CML21_ORYSJ7.378e-1236.81Probable calcium-binding protein CML21 OS=Oryza sa... [more]
CML17_ORYSJ7.378e-1234.78Probable calcium-binding protein CML17 OS=Oryza sa... [more]
CDPKN_ARATH7.378e-1238.28Calcium-dependent protein kinase 23 OS=Arabidopsis... [more]
CANB_ASHGO7.378e-1239.58Calcineurin subunit B OS=Ashbya gossypii GN=CNB1 P... [more]
CABP7_RAT7.378e-1247.83Calcium-binding protein 7 OS=Rattus norvegicus GN=... [more]
CABP7_PAPAN7.378e-1247.83Calcium-binding protein 7 OS=Papio anubis GN=CABP7... [more]
CABP7_MOUSE7.378e-1247.83Calcium-binding protein 7 OS=Mus musculus GN=Cabp7... [more]
CABP7_HUMAN7.378e-1247.83Calcium-binding protein 7 OS=Homo sapiens GN=CABP7... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN1DH11RM1 EHR Citrus clementina cDNA clone KN0AAN1DH11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877019 ID=FC877019; Name=FC877019; organism=Citrus clementina; type=EST; length=598bp
GGCGACGGTTGCATTACCACCAAGGAGCTTGGCACTGCTGTGAGGTGCAC
TGCGGGCGTAACCCCACTGAGGCGGAGCTCCCGGACAGTGATCAATGAAG
TGGATGCTGATGGTAATGGAACTATTGGTTTTCCTGAATTCCTAAACCTC
ATGGCCAGGAAGATGAAGGATACCGACTCTGAGGAGGAGCTGAAAGAGGC
CTTCCGGGTTTTCGACAAGGATCAGAATGGTTTCATCTCAGCTGCTGAGC
TGCGCCATGTGATGACAAACCTAGGAGAGAAACTTACTGATGAAGAAGTT
GATGAGATGATAAGGGAAGCTGATGTTGATGGTGATGGCCAGATAAATTA
TGAGGAATTTGTCAAGGTTATGATGGCCAAGTAATGACCCCAACCCACCA
ATACTTATAAAATGGGTTGACTAAATTATAAAGGGATTCCTAGTTTTCTC
TTTTACAATTTTTAATTTGATAGTCATGAGGGTCAGGCTAAAGGAAGCAA
TGGTCTTTTAATGGTGATGGGCCTGATGGTGTAGGACAAATGTTGTCTCC
CTCGTCAATATGTCTTGTGACTCGCAACACTTTTCGGTTTTTATTATT
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