FC877020

Overview
NameFC877020
Unique NameFC877020
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length692
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC877020 vs. ExPASy Swiss-Prot
Match: MLC1_DROSI (Myosin light chain alkali OS=Drosophila simulans GN=Mlc1 PE=4 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 8.235e-11
Identity = 42/144 (29.17%), Postives = 75/144 (52.08%), Query Frame = 3
Query:   39 QISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMA--RKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREA--DVDGDGQINYEEFVKVMMA 458
            ++   +  F +    G+G I   +LG  +R+L  NPT A L + +          I   EFL + +  +K K+    E+  E  +++DK++NG +  AEL+H +  LGE L DE+V+ +  +     D +G I Y +F++ +M+
Sbjct:    8 EVENVEFVFEVMGSPGEG-IDAVDLGDALRALNLNPTLA-LIEKLGGTKKRNEKKIKLDEFLPIYSQVKKEKEQGCYEDFIECLKLYDKEENGTMMLAELQHALLALGESLDDEQVETLFADCMDPEDDEGFIPYSQFIQRLMS 149          
BLAST of FC877020 vs. ExPASy Swiss-Prot
Match: MLC1_DROME (Myosin light chain alkali OS=Drosophila melanogaster GN=Mlc1 PE=2 SV=4)

HSP 1 Score: 67.3958 bits (163), Expect = 8.235e-11
Identity = 43/144 (29.86%), Postives = 75/144 (52.08%), Query Frame = 3
Query:   39 QISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMA--RKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREA--DVDGDGQINYEEFVKVMMA 458
            ++   +  F +    G+G I   +LG  +R+L  NPT A L + +          I   EFL + +  +K K+    E+  E  +++DK++NG +  AEL+H +  LGE L DE+V+ +  +     D +G I Y +FV+ +M+
Sbjct:    8 EVENVEFVFEVMGSPGEG-IDAVDLGDALRALNLNPTLA-LIEKLGGTKKRNEKKIKLDEFLPIYSQVKKEKEQGCYEDFIECLKLYDKEENGTMLLAELQHALLALGESLDDEQVETLFADCMDPEDDEGFIPYSQFVQRLMS 149          
BLAST of FC877020 vs. ExPASy Swiss-Prot
Match: CML29_ORYSJ (Probable calcium-binding protein CML29 OS=Oryza sativa subsp. japonica GN=CML29 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.235e-11
Identity = 47/136 (34.56%), Postives = 72/136 (52.94%), Query Frame = 3
Query:   42 ISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLM-ARKMKDTDSEEELKEAFRVFDK--DQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEF 440
            IS   EAF  FD D DG +T  EL  ++ SLG +  E E++DM+   DAD +G +   E L++M A ++        L+ A    +     +G + A EL  +++ +G   + E+  E+I   D DGDG I+ EEF
Sbjct:   29 ISSLVEAFQAFDSDNDGLVTAPELRGLLASLGLDKPEHEVRDMLARADADRDGKLSVEELLDVMNAGQLGLGALGALLQSAVPALESAAGPDGVLGADELARLLSVMG-TASVEDCMEIIACMDGDGDGAISVEEF 163          
The following BLAST results are available for this feature:
BLAST of FC877020 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 483
Match NameE-valueIdentityDescription
MLC1_DROSI8.235e-1129.17Myosin light chain alkali OS=Drosophila simulans G... [more]
MLC1_DROME8.235e-1129.86Myosin light chain alkali OS=Drosophila melanogast... [more]
CML29_ORYSJ8.235e-1134.56Probable calcium-binding protein CML29 OS=Oryza sa... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN1DH12RM1 EHR Citrus clementina cDNA clone KN0AAN1DH12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877020 ID=FC877020; Name=FC877020; organism=Citrus clementina; type=EST; length=692bp
GCACGAGGAGAAAAATGGCGGATCAGCTCACGGACGATCAGATCTCTGAG
TTCAAAGAGGCCTTCAGCTTGTTTGACAAGGATGGCGACGGTTGCATTAC
CACCAAGGAGCTTGGCACTGTTATGAGGTCACTGGGTCAGAACCCCACTG
AGGCTGAGCTCCAGGACATGATCAATGAAGTGGATGCTGATGGTAATGGA
ACTATTGATTTTCCTGAATTCCTAAACCTCATGGCCAGGAAGATGAAGGA
TACCGACTCTGAGGAGGAGCTGAAAGAGGCCTTCCGGGTTTTCGACAAGG
ATCAGAATGGTTTCATCTCAGCTGCTGAGCTGCGCCATGTGATGACAAAC
CTAGGAGAGAAACTTACTGATGAAGAAGTTGATGAGATGATAAGGGAAGC
TGATGTTGATGGTGATGGCCAGATAAATTATGAGGAATTTGTCAAGGTTA
TGATGGCCAAGTAATGACCCCAACCCACCAATACTTATAAAATGGGTTGA
CTAAATTATAAAGGGATTCCTAGTTTTCTCTTTTACAATTTTTAATTTGA
TAGTCATGAGGGTCAGGCTAAAGGAAGCAATGGTCTTTTAATGGTGATGG
GCCTGATGGTGTAGGAAGAATGTTGTCTCCCTCGTCAATATGTCTTGTGA
CTCGCAAAACTTTTCGGTTTTTATTATTTTAGTTGTTCTGCT
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