FC877065

Overview
NameFC877065
Unique NameFC877065
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length501
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC877065 vs. ExPASy Swiss-Prot
Match: ZC3HF_DANRE (Zinc finger CCCH domain-containing protein 15 OS=Danio rerio GN=zc3h15 PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 2.873e-28
Identity = 73/167 (43.71%), Postives = 99/167 (59.28%), Query Frame = 2
Query:   65 MPPKQQS------KAELAKKQKIVEDKTFGLKNKNKSKNVQKYV-----------QNLKQNVQPKPDQSKVXXXXXXXXXXXXXXXLNDLFKIAVSQPKVPVGVDPKSILCEFYKAGQCQKGFKCKFSHDLNVQRKGEKIDIYSDKRD-----KETMEDWDQEPLEK 499
            MPPK+ +      K +  KK+KI+EDKTFGLKNK  +K  QK++           QN +Q    + +++K                LN+LFK  V+  KV  GVDPKS+LC F+K GQC KG KCKFSHDL+++RK EK  +Y D RD     K+TME+WD++ LE+
Sbjct:    1 MPPKKPAPAAANKKTQEKKKEKIIEDKTFGLKNKKGAKQ-QKFIKAVTQQVKFGQQNARQIAAAESEKTK-----KKDDKKKELSELNELFKPVVAAQKVSKGVDPKSVLCAFFKQGQCTKGDKCKFSHDLSLERKCEKRSLYVDGRDDELLEKDTMENWDEKKLEE 161          
BLAST of FC877065 vs. ExPASy Swiss-Prot
Match: ZC3HF_CHICK (Zinc finger CCCH domain-containing protein 15 OS=Gallus gallus GN=ZC3H15 PE=1 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 4.901e-28
Identity = 71/161 (44.10%), Postives = 97/161 (60.25%), Query Frame = 2
Query:   65 MPPKQQS-------KAELAKKQKIVEDKTFGLKNKNKSKNVQ--KYVQNLKQNVQPKPDQS---KVXXXXXXXXXXXXXXXLNDLFKIAVSQPKVPVGVDPKSILCEFYKAGQCQKGFKCKFSHDLNVQRKGEKIDIYSDKRD----KETMEDWDQEPLEK 499
            MPPK+Q        KA+  KK+KI+EDKTFGLKNK  +K  +  K V +L +  Q  P Q+   +                LN+LFK  V+  K+  G DPKS++C F+K GQC KG KCKFSHDL+++RK EK  +Y D RD    K+TM++WD++ LE+
Sbjct:    1 MPPKKQQQPAGSSKKADQKKKEKIIEDKTFGLKNKKGAKQQKFFKAVTHLVKFGQQYPRQAAQTESEKKLKKEDKKKELQELNELFKPVVAAQKISKGADPKSVVCAFFKQGQCTKGDKCKFSHDLSLERKCEKRSVYIDARDEDLEKDTMDNWDEKKLEE 161          
BLAST of FC877065 vs. ExPASy Swiss-Prot
Match: ZC3HF_DROME (Zinc finger CCCH domain-containing protein 15 homolog OS=Drosophila melanogaster GN=CG8635 PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 2.517e-24
Identity = 65/152 (42.76%), Postives = 87/152 (57.24%), Query Frame = 2
Query:   62 KMPPKQQSKAELAKKQKIVEDKTFGLKNKNKSKNVQKYVQNLKQNVQ-----PKPDQSKVXXXXXXXXXXXXXXXLNDLFKIAVSQPKVPVGVDPKSILCEFYKAGQCQKGFKCKFSHDLNVQRKGEKIDIYSDKRDK-ETMEDWDQEPLEK 499
            K PP    K E  KK+K++EDKTFGLKNK  +K  QK++Q +++ VQ     P+ D  K                L  +FK   +Q KV  G DPKS++C F+K G C KG KCKFSHDL+ + K EK  IY D RD+ + M +WD   L++
Sbjct:    5 KAPPGPSKKTEQKKKEKVIEDKTFGLKNKKGNKQ-QKFIQQVQKQVQSGGQHPRQDGDKRKEEKEKKLAEQREMAL--IFKPVQTQ-KVEKGTDPKSVVCAFFKQGTCTKGDKCKFSHDLSQENKVEKRSIYVDMRDEDDPMTNWDDAKLKE 152          
BLAST of FC877065 vs. ExPASy Swiss-Prot
Match: ZC3HF_CAEEL (Zinc finger CCCH domain-containing protein 15 homolog OS=Caenorhabditis elegans GN=F27D4.4 PE=2 SV=3)

HSP 1 Score: 111.309 bits (277), Expect = 2.517e-24
Identity = 63/152 (41.45%), Postives = 88/152 (57.89%), Query Frame = 2
Query:   65 MPPKQQS---KAELAKKQKIVEDKTFGLKNKNKSKNVQKYVQNLKQNVQPKPDQSKVXXXXXXXXXXXXXXXLNDLFKIAVSQPKVPVGVDPKSILCEFYKAGQCQKGFKCKFSHDLNVQRKGEKIDIYSDKR----DKETMEDWDQEPLEK 499
            MPPKQQ    K+E  +K+K++EDKTFGLKNK  +KN QK+V  ++  V+    +  +               L+    +   + KV   VDPKS+LC F+K G C KG KCKFSHDL V +K  K ++Y+D R    D+ET E+WD + L +
Sbjct:    1 MPPKQQGPSKKSEQKRKEKVIEDKTFGLKNKKGNKN-QKFVAQVENQVRNNNTRMDLVRQQEAAKKKEKDELLDIANLLKPVEQKVAKDVDPKSLLCVFFKQGLCGKGAKCKFSHDLAVAQKTAKKNLYADSREVEKDEETNENWDSDKLNE 151          
BLAST of FC877065 vs. ExPASy Swiss-Prot
Match: ZC3HF_DROPS (Zinc finger CCCH domain-containing protein 15 homolog OS=Drosophila pseudoobscura pseudoobscura GN=GA21225 PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.249e-23
Identity = 62/154 (40.26%), Postives = 85/154 (55.19%), Query Frame = 2
Query:   65 MPPKQ-----QSKAELAKKQKIVEDKTFGLKNKNKSKNVQKYVQNLKQNVQPKPDQSKVXXXXXXXXXXXXXXXLNDLFKI--AVSQPKVPVGVDPKSILCEFYKAGQCQKGFKCKFSHDLNVQRKGEKIDIYSDKRDKE--TMEDWDQEPLEK 499
            MPPK+       K E  KK+K++EDKTFGLKNK  +K  QK++Q +++ VQ      +                L ++  I   V   KV  G DPKS++C F+K G C KG KCKFSHDL+++ K EK  +Y D RD E   M +WD   L++
Sbjct:    1 MPPKKAPAGPSKKTEQKKKEKVIEDKTFGLKNKKGNKQ-QKFIQQVQKQVQAGGHHPRQDGDKKKDEKEKKLADLREMASIFKPVQTQKVDKGTDPKSVVCAFFKQGLCTKGDKCKFSHDLSLENKVEKRSMYVDMRDNEDDLMTNWDDAKLKE 153          
BLAST of FC877065 vs. ExPASy Swiss-Prot
Match: ZC3HF_CAEBR (Zinc finger CCCH domain-containing protein 15 homolog OS=Caenorhabditis briggsae GN=CBG00292 PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 2.131e-23
Identity = 62/147 (42.18%), Postives = 86/147 (58.50%), Query Frame = 2
Query:   65 MPPKQ--QSKAELAKKQKIVEDKTFGLKNKNKSKNVQKYVQNLKQNVQPKPDQSKVXXXXXXXXXXXXXXXLNDLFKIAVSQPKVPVGVDPKSILCEFYKAGQCQKGFKCKFSHDLNVQRKGEKIDIYSDKRDKETMEDWDQEPLEK 499
            MPPKQ    KAE  +K+K++EDKTFGLKNK  +KN QK+V  ++  V+    +  +               L+    +   + KV   VDPKS+LC F+K G C KG KCKFSHDL V +K  K ++Y+DK    T E+WD+E L++
Sbjct:    1 MPPKQAPSKKAENKRKEKVIEDKTFGLKNKKGNKN-QKFVAQIENQVRNNNTRMDLVRQQEAAKKKEKDELLDIQNLLKPVEQKVAKDVDPKSLLCVFFKQGLCGKGAKCKFSHDLAVAQKTAKKNLYADK----TNENWDKEKLDE 142          
The following BLAST results are available for this feature:
BLAST of FC877065 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
ZC3HF_DANRE2.873e-2843.71Zinc finger CCCH domain-containing protein 15 OS=D... [more]
ZC3HF_CHICK4.901e-2844.10Zinc finger CCCH domain-containing protein 15 OS=G... [more]
ZC3HF_DROME2.517e-2442.76Zinc finger CCCH domain-containing protein 15 homo... [more]
ZC3HF_CAEEL2.517e-2441.45Zinc finger CCCH domain-containing protein 15 homo... [more]
ZC3HF_DROPS1.249e-2340.26Zinc finger CCCH domain-containing protein 15 homo... [more]
ZC3HF_CAEBR2.131e-2342.18Zinc finger CCCH domain-containing protein 15 homo... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN2AA08RM1 EHR Citrus clementina cDNA clone KN0AAN2AA08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877065 ID=FC877065; Name=FC877065; organism=Citrus clementina; type=EST; length=501bp
GCACGAGGAATTAAATCAAGGATATTTTATTTTGTCTTGTTATTGAATTT
GATGATCATAAAAGATGCCGCCGAAGCAGCAATCGAAAGCAGAATTAGCG
AAGAAGCAGAAGATCGTCGAAGACAAGACCTTCGGTCTTAAGAACAAAAA
CAAAAGCAAAAACGTTCAGAAATATGTTCAGAATCTCAAACAGAACGTTC
AGCCAAAACCCGACCAGTCTAAGGTCGCCGCCAAGAAAAAGAAGGAGGAA
GAGAAGGCTAAAGAGAAAGAGCTGAATGATCTGTTCAAGATTGCTGTTAG
TCAGCCTAAAGTTCCAGTTGGTGTTGATCCTAAGTCTATATTGTGCGAGT
TTTATAAAGCGGGACAGTGTCAGAAAGGTTTTAAATGCAAGTTCTCACAT
GATTTGAATGTTCAGAGGAAAGGGGAAAAGATTGACATTTACAGTGACAA
GCGCGACAAAGAAACAATGGAGGATTGGGATCAGGAACCTTTGGAAAAGG
T
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