FC877104

Overview
NameFC877104
Unique NameFC877104
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length706
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC877104 vs. ExPASy Swiss-Prot
Match: RS11_HAEDU (30S ribosomal protein S11 OS=Haemophilus ducreyi GN=rpsK PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.587e-11
Identity = 39/108 (36.11%), Postives = 58/108 (53.70%), Query Frame = 1
Query:  133 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 456
            GVAHI ASFN+T + +TD  G        GG   +  R +S+P+AA +AA+  ++  KE G+  L + ++              +S +RAL  +G +I  I DVTPIP
Sbjct:   19 GVAHIHASFNNTIVTITDRQGNALAWATAGGSGFRGSR-KSTPFAAQVAAERCAEAVKEFGLKNLEVMVKG--------PGPGRESTIRALNAAGFRITNITDVTPIP 117          
BLAST of FC877104 vs. ExPASy Swiss-Prot
Match: RS11_GLUDA (30S ribosomal protein S11 OS=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) GN=rpsK PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.587e-11
Identity = 41/121 (33.88%), Postives = 62/121 (51.24%), Query Frame = 1
Query:  103 PAVRDGEH---VFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 456
            P +R  E    + GVAH+ ++FN+T I ++D  G        G    K  R +S+PYAA +AA+D  ++ +E G+  L I++               +SALRAL   G  I  I D+TP+P
Sbjct:    7 PRIRKKERKNIISGVAHVLSTFNNTMITISDAQGNAIAWSSAGAQGFKGSR-KSTPYAAQVAAEDAGRKAREHGMETLEIEVSG--------PGSGRESALRALQAVGFSITSIRDMTPVP 118          
BLAST of FC877104 vs. ExPASy Swiss-Prot
Match: RS11_GEOMG (30S ribosomal protein S11 OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=rpsK PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.587e-11
Identity = 39/108 (36.11%), Postives = 62/108 (57.41%), Query Frame = 1
Query:  133 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 456
            GVAHI A+FN+T I +TD +G        GG   K  R +S+P+AA +AA+D +++ ++ G+ ++ + ++              +SALRAL  +G  +  I DVTPIP
Sbjct:   21 GVAHIQATFNNTIITITDPAGNVVAWSSAGGKGFKGSR-KSTPFAAQVAAEDCAKKAQDHGMRSVEVYVKG--------PGSGRESALRALQAAGFHVNFIRDVTPIP 119          
BLAST of FC877104 vs. ExPASy Swiss-Prot
Match: RS11_AZOVD (30S ribosomal protein S11 OS=Azotobacter vinelandii (strain DJ / ATCC BAA-1303) GN=rpsK PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.587e-11
Identity = 41/110 (37.27%), Postives = 58/110 (52.73%), Query Frame = 1
Query:  127 VFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 456
            V G+AHI ASFN+T + +TD  G       +GG   +  R +S+P+AA +AA+   Q   E G+  L + ++              +SA+RAL   G KI  I DVTPIP
Sbjct:   17 VDGIAHIHASFNNTIVTITDRQGNALSWATSGGSGFRGSR-KSTPFAAQVAAERAGQAALEYGLKNLDVNVKG--------PGPGRESAVRALNACGYKIASITDVTPIP 117          
BLAST of FC877104 vs. ExPASy Swiss-Prot
Match: RS11_ACTPJ (30S ribosomal protein S11 OS=Actinobacillus pleuropneumoniae serotype 3 (strain JL03) GN=rpsK PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.587e-11
Identity = 39/108 (36.11%), Postives = 58/108 (53.70%), Query Frame = 1
Query:  133 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 456
            GVAHI ASFN+T + +TD  G        GG   +  R +S+P+AA +AA+  ++  KE G+  L + ++              +S +RAL  +G +I  I DVTPIP
Sbjct:   19 GVAHIHASFNNTIVTITDRQGNALAWATAGGSGFRGSR-KSTPFAAQVAAERCAEAVKEFGLKNLEVMVKG--------PGPGRESTIRALNAAGFRITNITDVTPIP 117          
BLAST of FC877104 vs. ExPASy Swiss-Prot
Match: RS11_ACTP7 (30S ribosomal protein S11 OS=Actinobacillus pleuropneumoniae serotype 7 (strain AP76) GN=rpsK PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.587e-11
Identity = 39/108 (36.11%), Postives = 58/108 (53.70%), Query Frame = 1
Query:  133 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 456
            GVAHI ASFN+T + +TD  G        GG   +  R +S+P+AA +AA+  ++  KE G+  L + ++              +S +RAL  +G +I  I DVTPIP
Sbjct:   19 GVAHIHASFNNTIVTITDRQGNALAWATAGGSGFRGSR-KSTPFAAQVAAERCAEAVKEFGLKNLEVMVKG--------PGPGRESTIRALNAAGFRITNITDVTPIP 117          
BLAST of FC877104 vs. ExPASy Swiss-Prot
Match: RS11_ACTP2 (30S ribosomal protein S11 OS=Actinobacillus pleuropneumoniae serotype 5b (strain L20) GN=rpsK PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.587e-11
Identity = 39/108 (36.11%), Postives = 58/108 (53.70%), Query Frame = 1
Query:  133 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 456
            GVAHI ASFN+T + +TD  G        GG   +  R +S+P+AA +AA+  ++  KE G+  L + ++              +S +RAL  +G +I  I DVTPIP
Sbjct:   19 GVAHIHASFNNTIVTITDRQGNALAWATAGGSGFRGSR-KSTPFAAQVAAERCAEAVKEFGLKNLEVMVKG--------PGPGRESTIRALNAAGFRITNITDVTPIP 117          
The following BLAST results are available for this feature:
BLAST of FC877104 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 227
Match NameE-valueIdentityDescription
RS11_HAEDU8.587e-1136.1130S ribosomal protein S11 OS=Haemophilus ducreyi G... [more]
RS11_GLUDA8.587e-1133.8830S ribosomal protein S11 OS=Gluconacetobacter dia... [more]
RS11_GEOMG8.587e-1136.1130S ribosomal protein S11 OS=Geobacter metalliredu... [more]
RS11_AZOVD8.587e-1137.2730S ribosomal protein S11 OS=Azotobacter vinelandi... [more]
RS11_ACTPJ8.587e-1136.1130S ribosomal protein S11 OS=Actinobacillus pleuro... [more]
RS11_ACTP78.587e-1136.1130S ribosomal protein S11 OS=Actinobacillus pleuro... [more]
RS11_ACTP28.587e-1136.1130S ribosomal protein S11 OS=Actinobacillus pleuro... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN2AD10RM1 EHR Citrus clementina cDNA clone KN0AAN2AD10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877104 ID=FC877104; Name=FC877104; organism=Citrus clementina; type=EST; length=706bp
GCACGAGGATTTCGAGGCTTTTGTGATCAACTCTCCGTGTCATCAGCAGC
CATGTCAAGAAGAAAGACCAGAGAGCCTAAGGAGGAAAATGTTACTCTTG
GACCTGCCGTTAGAGATGGCGAGCATGTATTTGGCGTTGCCCACATTTTT
GCGTCGTTTAATGACACTTTCATTCATGTGACTGACTTGTCTGGAAGAGA
AACTCTTGTGCGCATTACTGGTGGTATGAAGGTTAAAGCTGACAGGGATG
AATCCTCCCCTTATGCAGCTATGCTTGCAGCACAAGATGTTTCTCAACGA
TGCAAGGAGCTTGGCATTACTGCTCTTCATATTAAGCTCCGGGCTACTGG
GGGTAACAAAACTAAAACTCCTGGTCCAGGTGCTCAGTCAGCACTTAGAG
CTCTTGCTCGTTCTGGAATGAAGATTGGCCGCATAGAGGATGTGACTCCA
ATTCCCACCGACAGTACCCGCAGAAAGGGTGGTAGAAGGGGTAGAAGGTT
GTAATTCTTTTCCTCACACCCATCCATAACGTTCAAGATGATGCCGTGGT
TACAGAGAGTTTCACTCTCTTCTGTTAGATGCAAGAGTTATTTCCCAATT
TTGTTGTTTGGAATGTCTGTAGTCTTGGATTCCTTTGTGTTAGCCTTTCG
GATCAATTAAGTTTATACAGTGGCAAGACTAATCATTTCTCCATGAGTTT
CTGAAA
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