FC877104
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC877104 vs. ExPASy Swiss-Prot
Match: RS11_METVS (30S ribosomal protein S11P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rps11p PE=3 SV=1) HSP 1 Score: 122.094 bits (305), Expect = 2.938e-27 Identity = 57/113 (50.44%), Postives = 83/113 (73.45%), Query Frame = 1 Query: 130 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 468 +G+ HI+AS+N+T +HVTD++G ET+ +++GGM V+ RDESSPYAAM AA +++ ++ GI +H+K+RA AQ+A+RAL+R+G+KIGRIED TPIP D T Sbjct: 5 WGLVHIYASYNNTILHVTDVTGAETIAKVSGGMIVRNQRDESSPYAAMQAAFKIAELMRDKGIDQVHVKVRAAGGQKSKNPGPGAQAAIRALSRAGIKIGRIEDATPIPHDGT 117
BLAST of FC877104 vs. ExPASy Swiss-Prot
Match: RS11_METST (30S ribosomal protein S11P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rps11p PE=3 SV=1) HSP 1 Score: 121.324 bits (303), Expect = 5.011e-27 Identity = 61/113 (53.98%), Postives = 81/113 (71.68%), Query Frame = 1 Query: 130 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 468 +GVAH+++SFN+T I VTD++G ET+ + +GG V++DR ESSP+AAM AA V+ KE GI LHIK+RA AQ+ +RALAR+G+KIG+IEDVTPIP D T Sbjct: 7 WGVAHVYSSFNNTIITVTDITGAETITQWSGGKVVRSDRQESSPFAAMEAANRVADDIKEKGIAGLHIKVRASGGNGPRTPGPGAQATIRALARAGIKIGKIEDVTPIPHDGT 119
BLAST of FC877104 vs. ExPASy Swiss-Prot
Match: RS11_METMP (30S ribosomal protein S11P OS=Methanococcus maripaludis GN=rps11p PE=3 SV=1) HSP 1 Score: 121.324 bits (303), Expect = 5.011e-27 Identity = 57/113 (50.44%), Postives = 82/113 (72.57%), Query Frame = 1 Query: 130 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 468 +G+ HI+AS+N+T +HVTDL+G ET+ +++GGM V+ RDESSPYAAM AA ++ ++ GI +H+K+RA AQ+A+RAL+R+G++IGRIED TPIP D T Sbjct: 5 WGLVHIYASYNNTILHVTDLTGAETIAKVSGGMIVRNQRDESSPYAAMQAAFKIADLMRDKGIDQVHVKVRATGGQKSKNPGPGAQAAIRALSRAGIRIGRIEDATPIPHDGT 117
BLAST of FC877104 vs. ExPASy Swiss-Prot
Match: RS11_METM7 (30S ribosomal protein S11P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rps11p PE=3 SV=1) HSP 1 Score: 121.324 bits (303), Expect = 5.011e-27 Identity = 57/113 (50.44%), Postives = 82/113 (72.57%), Query Frame = 1 Query: 130 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 468 +G+ HI+AS+N+T +HVTDL+G ET+ +++GGM V+ RDESSPYAAM AA ++ ++ GI +H+K+RA AQ+A+RAL+R+G++IGRIED TPIP D T Sbjct: 5 WGLVHIYASYNNTILHVTDLTGAETIAKVSGGMIVRNQRDESSPYAAMQAAFKIADLMRDKGIDQVHVKVRATGGQKSKNPGPGAQAAIRALSRAGIRIGRIEDATPIPHDGT 117
BLAST of FC877104 vs. ExPASy Swiss-Prot
Match: RS11_METM5 (30S ribosomal protein S11P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rps11p PE=3 SV=1) HSP 1 Score: 121.324 bits (303), Expect = 5.011e-27 Identity = 57/113 (50.44%), Postives = 82/113 (72.57%), Query Frame = 1 Query: 130 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 468 +G+ HI+AS+N+T +HVTDL+G ET+ +++GGM V+ RDESSPYAAM AA ++ ++ GI +H+K+RA AQ+A+RAL+R+G++IGRIED TPIP D T Sbjct: 5 WGLVHIYASYNNTILHVTDLTGAETIAKVSGGMIVRNQRDESSPYAAMQAAFKIADLMRDKGIDQVHVKVRATGGQKSKNPGPGAQAAIRALSRAGIRIGRIEDATPIPHDGT 117
BLAST of FC877104 vs. ExPASy Swiss-Prot
Match: RS11_HALWD (30S ribosomal protein S11P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rps11p PE=3 SV=1) HSP 1 Score: 120.939 bits (302), Expect = 6.545e-27 Identity = 61/116 (52.59%), Postives = 81/116 (69.83%), Query Frame = 1 Query: 121 EHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 468 E +GVAH+ ASFN+T I VTDL+G ET+V+ +GG VK +RDE+SPYAAM A+ V++ K GI LH+++R AQ+ +RALAR+G++IGRIEDVTPIP D T Sbjct: 8 EKRWGVAHVHASFNNTLITVTDLTGAETIVKSSGGAVVKQNRDEASPYAAMQMAESVAEDIKAAGIDGLHVRVRGPGGNGNKSPGPGAQATIRALARAGLEIGRIEDVTPIPHDGT 123
BLAST of FC877104 vs. ExPASy Swiss-Prot
Match: RS11_METJA (30S ribosomal protein S11P OS=Methanocaldococcus jannaschii GN=rps11p PE=3 SV=1) HSP 1 Score: 120.553 bits (301), Expect = 8.547e-27 Identity = 57/113 (50.44%), Postives = 80/113 (70.80%), Query Frame = 1 Query: 130 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 468 +G+ HI++S+N+T IH TD++G ET+ R++GG + RDE SPYAAM AA +++ KE GI +HIK+RA AQ+A+RALAR+G++IGRIEDVTP+P D T Sbjct: 9 WGIVHIYSSYNNTIIHATDITGAETIARVSGGRVTRNQRDEGSPYAAMQAAFKLAEVLKERGIENIHIKVRAPGGSGQKNPGPGAQAAIRALARAGLRIGRIEDVTPVPHDGT 121
BLAST of FC877104 vs. ExPASy Swiss-Prot
Match: RS11_METTH (30S ribosomal protein S11P OS=Methanobacterium thermoautotrophicum GN=rps11p PE=3 SV=1) HSP 1 Score: 119.783 bits (299), Expect = 1.458e-26 Identity = 60/113 (53.10%), Postives = 81/113 (71.68%), Query Frame = 1 Query: 130 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 468 +G+A+I++SFN+T I +TD++G ET+ + +GG V+ADR ESSP+AAM AA + KE GI LHIK+RA AQ+A+RALAR+GM+IG+IEDVTPIP D T Sbjct: 7 WGIANIYSSFNNTIITITDITGAETITQWSGGKVVRADRQESSPFAAMEAATRAADDAKEKGIVGLHIKVRAPGGNGPRTPGPGAQAAIRALARAGMRIGKIEDVTPIPHDGT 119
BLAST of FC877104 vs. ExPASy Swiss-Prot
Match: RS11_THEAC (30S ribosomal protein S11P OS=Thermoplasma acidophilum GN=rps11p PE=3 SV=1) HSP 1 Score: 119.013 bits (297), Expect = 2.487e-26 Identity = 63/112 (56.25%), Postives = 80/112 (71.43%), Query Frame = 1 Query: 133 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 468 G+AHI+AS N+T IHVTD +G ET+ ++GGM VK DRD++SPYAAM AA VS+ KE IT L IK+RA AQ+A+RAL+R+G+KI RIE+VTPIP D T Sbjct: 8 GIAHIYASQNNTIIHVTDPTGAETIAMVSGGMVVKNDRDQASPYAAMKAADMVSEALKEKEITDLIIKVRAPGGNKSKIPGPGAQAAIRALSRAGLKIVRIEEVTPIPHDGT 119
BLAST of FC877104 vs. ExPASy Swiss-Prot
Match: RS11_SULSO (30S ribosomal protein S11P OS=Sulfolobus solfataricus GN=rps11p PE=3 SV=2) HSP 1 Score: 119.013 bits (297), Expect = 2.487e-26 Identity = 62/112 (55.36%), Postives = 79/112 (70.54%), Query Frame = 1 Query: 130 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDS 465 +G+AHI+AS N+T + ++DL+G E + R +GGM VKADR++SSPYAAMLAA + E GI ALHIK+RA AQ A+RALAR+G IGRIEDVTPIP D+ Sbjct: 9 WGIAHIYASQNNTLLTISDLTGAEIISRASGGMVVKADREKSSPYAAMLAANKAASDALEKGIMALHIKVRAPGGYGSKTPGPGAQPAIRALARAGFIIGRIEDVTPIPHDT 120 The following BLAST results are available for this feature:
BLAST of FC877104 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 227
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Sequences
The
following sequences are available for this feature:
EST sequence >FC877104 ID=FC877104; Name=FC877104; organism=Citrus clementina; type=EST; length=706bpback to top |