FC877106

Overview
NameFC877106
Unique NameFC877106
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length746
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC877106 vs. ExPASy Swiss-Prot
Match: MRP7_MOUSE (Multidrug resistance-associated protein 7 OS=Mus musculus GN=Abcc10 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.493e-24
Identity = 58/131 (44.27%), Postives = 87/131 (66.41%), Query Frame = -3
Query:  355 DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKLM-ETNSSFSKLV 744
            D  +W+ALE+C L     ++   LD  + + G+N S GQRQL CL R LL   +IL +DEA AS+D  TD +LQ+ I + F+N TV+T+AHR+ T+++SD V+VL  G+++E D PS L  + +S F +L+
Sbjct: 1358 DRALWQALEQCHLSEVAVAMGG-LDGELGERGQNLSLGQRQLLCLARALLTDAKILCIDEATASVDQKTDQLLQQTICKRFANKTVLTIAHRLNTILNSDRVLVLQAGRVVELDSPSALRNQPHSLFQQLL 1487          
BLAST of FC877106 vs. ExPASy Swiss-Prot
Match: MRP6_RAT (Multidrug resistance-associated protein 6 OS=Rattus norvegicus GN=Abcc6 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.325e-24
Identity = 53/132 (40.15%), Postives = 85/132 (64.39%), Query Frame = -3
Query:  349 DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKLMETNSSFSKLVAE 744
            D+ IW ALE  QLK  ++SLP +L    S +G++ S GQ+QL CL R LL++ +IL+LDEA AS+D  T+  +Q  + + F+ CTV+ +AHR+ +V++   V+V+  G++ E   P++L+     F +L  E
Sbjct: 1367 DEGIWAALETVQLKAFVTSLPGQLQYECSGQGDDLSVGQKQLLCLARALLRKTQILILDEATASVDPGTEIQMQAALERWFAQCTVLLIAHRLRSVMNCARVLVMDEGQVAESGSPAQLLAQKGLFYRLAQE 1498          
BLAST of FC877106 vs. ExPASy Swiss-Prot
Match: MRP7_HUMAN (Multidrug resistance-associated protein 7 OS=Homo sapiens GN=ABCC10 PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.672e-24
Identity = 57/131 (43.51%), Postives = 88/131 (67.18%), Query Frame = -3
Query:  355 DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKLM-ETNSSFSKLV 744
            D  +W+AL++C L   I+S+   LD  + + G + S GQRQL CL R LL   +IL +DEA AS+D  TD +LQ+ I + F+N TV+T+AHR+ T+++SD V+VL  G+++E D P+ L  + +S F +L+
Sbjct: 1349 DRALWQALKQCHLSEVITSMGG-LDGELGEGGRSLSLGQRQLLCLARALLTDAKILCIDEATASVDQKTDQLLQQTICKRFANKTVLTIAHRLNTILNSDRVLVLQAGRVVELDSPATLRNQPHSLFQQLL 1478          
BLAST of FC877106 vs. ExPASy Swiss-Prot
Match: AB13C_ARATH (ABC transporter C family member 13 OS=Arabidopsis thaliana GN=ABCC13 PE=2 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 7.408e-24
Identity = 59/131 (45.04%), Postives = 84/131 (64.12%), Query Frame = -3
Query:  355 DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKLMETNSS-FSKLV 744
            D  IW+ L+KC++K  + S+   LDS V + G ++S GQRQL CL R LLK ++IL LDE  A+ID  T ++L   I  E    TVIT+AHR+ TV+D D +++L  G L+E  +P  L++ +SS FS  V
Sbjct: 1061 DWRIWEILDKCKVKAAVESVGG-LDSYVKESGCSFSVGQRQLLCLARALLKSSKILCLDECTANIDVHTASLLHNTISSECKGVTVITIAHRISTVVDLDSILILDRGILVEQGKPQHLLQDDSSTFSSFV 1190          
BLAST of FC877106 vs. ExPASy Swiss-Prot
Match: MRP6_MOUSE (Multidrug resistance-associated protein 6 OS=Mus musculus GN=Abcc6 PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.155e-23
Identity = 51/132 (38.64%), Postives = 84/132 (63.64%), Query Frame = -3
Query:  349 DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKLMETNSSFSKLVAE 744
            D+ IW ALE  QLK  ++SLP +L    + +G++ S G +QL CL R LL++ +IL+LDEA AS+D  T+  +Q  + + F+ CT++ +AHR+ +V+D   V+V+  G++ E   P++L+     F +L  E
Sbjct: 1363 DEGIWAALETVQLKAFVTSLPGQLQYECAGQGDDLSVGHKQLLCLARALLRKTQILILDEATASVDPGTEMQMQAALERWFTQCTLLLIAHRLRSVMDCARVLVMDEGQVAESGNPAQLLAQKGLFYRLAHE 1494          
BLAST of FC877106 vs. ExPASy Swiss-Prot
Match: ABCC9_DICDI (ABC transporter C family member 9 OS=Dictyostelium discoideum GN=abcC9 PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.815e-23
Identity = 51/131 (38.93%), Postives = 83/131 (63.36%), Query Frame = -3
Query:  355 DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENW-SAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKLMETNSSFSKLV 744
            D+ IW  LE  +LK  I  +P KL+S + + G    S GQ+QL CL R L+K  +++++DEA +S+D  T   ++ +I +   N T++T+AHR+  +IDSD + V+   KL+E++ P  L+ +NS F K+V
Sbjct: 1206 DEMIWNYLEMVKLKKLIIEMPLKLNSKIHENGNTTLSYGQKQLLCLCRCLIKNPKLIIMDEATSSVDFQTAETIKSVINENLVNNTILTIAHRLDIIIDSDKIAVIDNSKLIEFENPKNLINSNSKFRKIV 1336          
BLAST of FC877106 vs. ExPASy Swiss-Prot
Match: ABCC7_DICDI (ABC transporter C family member 7 OS=Dictyostelium discoideum GN=abcC7 PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.397e-22
Identity = 57/134 (42.54%), Postives = 85/134 (63.43%), Query Frame = -3
Query:  355 DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKLMET----NSSFSKLV 744
            D EIW ALEK +LK TIS LP K+D+ + ++  N S GQ+QL CL RVLLK  +++  DE ++SID  T   L   +++  +N T +T+AHR+ T+IDSD ++V+  G+L+E  + + +       NS F K V
Sbjct: 1186 DSEIWLALEKVKLKETISLLPMKIDTIIHEQA-NLSFGQKQLLCLTRVLLKSPKLVFFDEHSSSIDYFTAHQLNISVKENITNSTTLTIAHRIDTIIDSDRILVIDSGELIEIFDKNNINNNINNQNSKFKKFV 1318          
BLAST of FC877106 vs. ExPASy Swiss-Prot
Match: MDLB_BUCAI (Multidrug resistance-like ATP-binding protein mdlB OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=mdlB PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.383e-22
Identity = 48/138 (34.78%), Postives = 87/138 (63.04%), Query Frame = -3
Query:  331 DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKLMETNSSFSKLVAEYWSSCR 744
            ++++W  L+   L   + S+P  + S + +EG N S GQ+QL  + RVL+   ++L+LDEA A+IDS T+ ++Q+ +     NCT+I +AHR+ T+I++D ++VL  GK++E+    +L+   S + K+    + SC+
Sbjct:  444 EEKVWNILDTVHLSDLVKSMPKGIYSLLGEEGNNLSVGQKQLLAIARVLVAYPKVLILDEATANIDSGTEQLIQKTLLSIRKNCTLIIIAHRLSTIIEADSIIVLKKGKIVEFGTHEQLLTKKSCYYKMYK--FQSCK 579          
BLAST of FC877106 vs. ExPASy Swiss-Prot
Match: MDLB_BUCAP (Multidrug resistance-like ATP-binding protein mdlB OS=Buchnera aphidicola subsp. Schizaphis graminum GN=mdlB PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.017e-21
Identity = 46/129 (35.66%), Postives = 83/129 (64.34%), Query Frame = -3
Query:  358 DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKLMETNSSFSKL 744
            +++IW  L+   L + + S+P  + S + +EG N S GQ+QL  + R+L++  +IL+LDEA A+IDS T+ ++Q  +    +  T++ +AHR+ TVI++DM++VL  GK++E     +L+E    + K+
Sbjct:  444 EEKIWNVLKTVHLSSLVQSMPKGIYSILGEEGNNLSLGQKQLLAIARILVRNPKILILDEATANIDSGTEKLIQTTLSSIRAKTTLVVIAHRLSTVIEADMIVVLKKGKIVELGTHKQLLEKKGFYWKM 572          
BLAST of FC877106 vs. ExPASy Swiss-Prot
Match: YBT1_YEAST (ATP-dependent bile acid permease OS=Saccharomyces cerevisiae GN=YBT1 PE=1 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 3.441e-21
Identity = 51/104 (49.04%), Postives = 73/104 (70.19%), Query Frame = -3
Query:  367 LDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEP-SKLMETNSSF 675
            L S +S+ G N S GQRQL CL R LL+  +I++LDEA ASID ++DA +Q  IR+EF   T++T+AHR+ +VID D ++V+  G++ EYD P S L+   S+F
Sbjct: 1528 LSSEISEGGSNLSQGQRQLMCLARSLLRSPKIILLDEATASIDYSSDAKIQETIRKEFQGSTILTIAHRLRSVIDYDKILVMDAGEVKEYDHPYSLLLNKQSAF 1631          
The following BLAST results are available for this feature:
BLAST of FC877106 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 382
Match NameE-valueIdentityDescription
MRP7_MOUSE1.493e-2444.27Multidrug resistance-associated protein 7 OS=Mus m... [more]
MRP6_RAT3.325e-2440.15Multidrug resistance-associated protein 6 OS=Rattu... [more]
MRP7_HUMAN5.672e-2443.51Multidrug resistance-associated protein 7 OS=Homo ... [more]
AB13C_ARATH7.408e-2445.04ABC transporter C family member 13 OS=Arabidopsis ... [more]
MRP6_MOUSE2.155e-2338.64Multidrug resistance-associated protein 6 OS=Mus m... [more]
ABCC9_DICDI2.815e-2338.93ABC transporter C family member 9 OS=Dictyostelium... [more]
ABCC7_DICDI1.397e-2242.54ABC transporter C family member 7 OS=Dictyostelium... [more]
MDLB_BUCAI2.383e-2234.78Multidrug resistance-like ATP-binding protein mdlB... [more]
MDLB_BUCAP2.017e-2135.66Multidrug resistance-like ATP-binding protein mdlB... [more]
YBT1_YEAST3.441e-2149.04ATP-dependent bile acid permease OS=Saccharomyces ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAN3DB01RM1 EHR Citrus clementina cDNA clone KN0AAN3DB01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877106 ID=FC877106; Name=FC877106; organism=Citrus clementina; type=EST; length=746bp
GATAAACTGAAAACTTTTTATTATTGAATCAATGTATTTTACACACTTAT
ATAACAAGTATCAATTCCTTGTTAATAATCTGTTACACATGCACGTAGTA
ATTCTTAAACCAATATAACAGATTGAGCCACGTCAGCTAGCTATAACAAA
CTGAGCCACGTCAGCTTAGGGAGCTAATCTGCTACAGTCCAACACACAGT
AACAATCATGTGCTCGCTTCCTCTGTTTCATCACAATTAACCAGTTTCAC
TAACAGTGGGACCCGTTCATGCAGAATTTCGGTTGTTGAGCTCATTACTG
AAAGTTATTCAAATTCTGGTAGGAATTTCTCCTGCAACTTGACCAGTACT
CTGCTACAAGCTTGGAAAAGGAGGAATTAGTTTCCATAAGCTTTGATGGT
TCATCATACTCCAACAATTTTCCATATGAGAGCACCATGACCATGTCACT
ATCAATAACAGTTGGTACTCTATGAGCTACCGTTATCACTGTGCAGTTGG
AGAATTCCTGCCTGATAATTCTCTGTAGAATAGCATCTGTTGCGGAATCA
ATGGAAGCGTTAGCTTCATCCAGAACTAGAATTCTATTTCTCTTTAGGAG
GACTCTTCCAAGGCAAAAGAGTTGGCGTTGCCCCGCGCTCCAATTTTCAC
CTTCATCACTCACAGATGAGTCCAGCTTATTGGGCAGGCTGCTGATAGTT
GTCTTAAGCTGACACTTCTCCAGAGCCTTCCATATTTCATCATCTG
back to top