FC877106

Overview
NameFC877106
Unique NameFC877106
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length746
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC877106 vs. ExPASy Swiss-Prot
Match: CFTR_PAPAN (Cystic fibrosis transmembrane conductance regulator OS=Papio anubis GN=CFTR PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.969e-20
Identity = 47/131 (35.88%), Postives = 77/131 (58.78%), Query Frame = -3 
Query:  352 DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKLMETNSSFSKLVA 744
            D EIWK  ++  L++ I   P KLD  + D G   S G +QL CL R +L + +IL+LDE +A +D  T  I++R ++Q F++CTVI   HR+  +++    +V+   K+ +YD   KL+   S F + ++
Sbjct: 1313 DQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEHRIEAMLECQQFLVIEENKVRQYDSIQKLLNERSLFRQAIS 1443
[Close]
BLAST of FC877106 vs. ExPASy Swiss-Prot
Match: CFTR_OTOGA (Cystic fibrosis transmembrane conductance regulator OS=Otolemur garnettii GN=CFTR PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.969e-20
Identity = 47/131 (35.88%), Postives = 77/131 (58.78%), Query Frame = -3 
Query:  352 DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKLMETNSSFSKLVA 744
            D EIWK  ++  L++ I   P KLD  + D G   S G +QL CL R +L + +IL+LDE +A +D  T  I++R ++Q F++CTVI   HR+  +++    +V+   K+ +YD   KL+   S F + ++
Sbjct: 1314 DQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGYVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQIIRRTLKQAFADCTVILCEHRIEAMLECQRFLVIEENKVRQYDSIQKLLSEKSLFRQAIS 1444
[Close]
BLAST of FC877106 vs. ExPASy Swiss-Prot
Match: CFTR_ORNAN (Cystic fibrosis transmembrane conductance regulator OS=Ornithorhynchus anatinus GN=CFTR PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.969e-20
Identity = 46/131 (35.11%), Postives = 77/131 (58.78%), Query Frame = -3 
Query:  352 DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKLMETNSSFSKLVA 744
            D E+WK  E+  LK+ I   P +LD  + D G   S G RQL CL R +L + +IL+LDE +A +D  T  ++++ ++Q F+NCTVI   HR+  +++    +V+   K+ +Y+   KL+   S F + ++
Sbjct: 1314 DQELWKVAEEVGLKSVIEQFPGQLDFVLIDGGYVLSHGHRQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAFTNCTVILSEHRIEAMLECQRFLVIEENKVRQYESIQKLLNEKSVFKQAIS 1444
[Close]
BLAST of FC877106 vs. ExPASy Swiss-Prot
Match: CFTR_MACMU (Cystic fibrosis transmembrane conductance regulator OS=Macaca mulatta GN=CFTR PE=2 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 4.969e-20
Identity = 47/131 (35.88%), Postives = 77/131 (58.78%), Query Frame = -3 
Query:  352 DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKLMETNSSFSKLVA 744
            D EIWK  ++  L++ I   P KLD  + D G   S G +QL CL R +L + +IL+LDE +A +D  T  I++R ++Q F++CTVI   HR+  +++    +V+   K+ +YD   KL+   S F + ++
Sbjct: 1313 DQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEHRIEAMLECQQFLVIEENKVRQYDSIQKLLNERSLFRQAIS 1443
[Close]
BLAST of FC877106 vs. ExPASy Swiss-Prot
Match: CFTR_MACFU (Cystic fibrosis transmembrane conductance regulator OS=Macaca fuscata fuscata GN=CFTR PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.969e-20
Identity = 47/131 (35.88%), Postives = 77/131 (58.78%), Query Frame = -3 
Query:  352 DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKLMETNSSFSKLVA 744
            D EIWK  ++  L++ I   P KLD  + D G   S G +QL CL R +L + +IL+LDE +A +D  T  I++R ++Q F++CTVI   HR+  +++    +V+   K+ +YD   KL+   S F + ++
Sbjct: 1313 DQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEHRIEAMLECQQFLVIEENKVRQYDSIQKLLNERSLFRQAIS 1443
[Close]
BLAST of FC877106 vs. ExPASy Swiss-Prot
Match: CFTR_MACFA (Cystic fibrosis transmembrane conductance regulator OS=Macaca fascicularis GN=CFTR PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.969e-20
Identity = 47/131 (35.88%), Postives = 77/131 (58.78%), Query Frame = -3 
Query:  352 DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKLMETNSSFSKLVA 744
            D EIWK  ++  L++ I   P KLD  + D G   S G +QL CL R +L + +IL+LDE +A +D  T  I++R ++Q F++CTVI   HR+  +++    +V+   K+ +YD   KL+   S F + ++
Sbjct: 1313 DQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEHRIEAMLECQQFLVIEENKVRQYDSIQKLLNERSLFRQAIS 1443
[Close]
BLAST of FC877106 vs. ExPASy Swiss-Prot
Match: CFTR_HYLLE (Cystic fibrosis transmembrane conductance regulator OS=Hylobates leucogenys GN=CFTR PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.969e-20
Identity = 47/131 (35.88%), Postives = 77/131 (58.78%), Query Frame = -3 
Query:  352 DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKLMETNSSFSKLVA 744
            D EIWK  ++  L++ I   P KLD  + D G   S G +QL CL R +L + +IL+LDE +A +D  T  I++R ++Q F++CTVI   HR+  +++    +V+   K+ +YD   KL+   S F + ++
Sbjct: 1312 DQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEHRIEAMLECQQFLVIEENKVRQYDSIQKLLNERSLFRQAIS 1442
[Close]
BLAST of FC877106 vs. ExPASy Swiss-Prot
Match: CFTR_HUMAN (Cystic fibrosis transmembrane conductance regulator OS=Homo sapiens GN=CFTR PE=1 SV=3)

HSP 1 Score: 98.2117 bits (243), Expect = 4.969e-20
Identity = 47/131 (35.88%), Postives = 77/131 (58.78%), Query Frame = -3 
Query:  352 DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKLMETNSSFSKLVA 744
            D EIWK  ++  L++ I   P KLD  + D G   S G +QL CL R +L + +IL+LDE +A +D  T  I++R ++Q F++CTVI   HR+  +++    +V+   K+ +YD   KL+   S F + ++
Sbjct: 1312 DQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEHRIEAMLECQQFLVIEENKVRQYDSIQKLLNERSLFRQAIS 1442
[Close]
BLAST of FC877106 vs. ExPASy Swiss-Prot
Match: CFTR_GORGO (Cystic fibrosis transmembrane conductance regulator OS=Gorilla gorilla gorilla GN=CFTR PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.969e-20
Identity = 47/131 (35.88%), Postives = 77/131 (58.78%), Query Frame = -3 
Query:  352 DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKLMETNSSFSKLVA 744
            D EIWK  ++  L++ I   P KLD  + D G   S G +QL CL R +L + +IL+LDE +A +D  T  I++R ++Q F++CTVI   HR+  +++    +V+   K+ +YD   KL+   S F + ++
Sbjct: 1312 DQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEHRIEAMLECQQFLVIEENKVRQYDSIQKLLNERSLFRQAIS 1442
[Close]
BLAST of FC877106 vs. ExPASy Swiss-Prot
Match: CFTR_COLGU (Cystic fibrosis transmembrane conductance regulator OS=Colobus guereza GN=CFTR PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.969e-20
Identity = 47/131 (35.88%), Postives = 77/131 (58.78%), Query Frame = -3 
Query:  352 DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKLMETNSSFSKLVA 744
            D EIWK  ++  L++ I   P KLD  + D G   S G +QL CL R +L + +IL+LDE +A +D  T  I++R ++Q F++CTVI   HR+  +++    +V+   K+ +YD   KL+   S F + ++
Sbjct: 1313 DQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEHRIEAMLECQQFLVIEENKVRQYDSIQKLLNERSLFRQAIS 1443
The following BLAST results are available for this feature:
BLAST of FC877106 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 382
Match NameE-valueIdentityDescription
CFTR_PAPAN4.969e-2035.88Cystic fibrosis transmembrane conductance regulato... [more]
CFTR_OTOGA4.969e-2035.88Cystic fibrosis transmembrane conductance regulato... [more]
CFTR_ORNAN4.969e-2035.11Cystic fibrosis transmembrane conductance regulato... [more]
CFTR_MACMU4.969e-2035.88Cystic fibrosis transmembrane conductance regulato... [more]
CFTR_MACFU4.969e-2035.88Cystic fibrosis transmembrane conductance regulato... [more]
CFTR_MACFA4.969e-2035.88Cystic fibrosis transmembrane conductance regulato... [more]
CFTR_HYLLE4.969e-2035.88Cystic fibrosis transmembrane conductance regulato... [more]
CFTR_HUMAN4.969e-2035.88Cystic fibrosis transmembrane conductance regulato... [more]
CFTR_GORGO4.969e-2035.88Cystic fibrosis transmembrane conductance regulato... [more]
CFTR_COLGU4.969e-2035.88Cystic fibrosis transmembrane conductance regulato... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN3DB01RM1 EHR Citrus clementina cDNA clone KN0AAN3DB01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877106 ID=FC877106; Name=FC877106; organism=Citrus clementina; type=EST; length=746bp
GATAAACTGAAAACTTTTTATTATTGAATCAATGTATTTTACACACTTAT
ATAACAAGTATCAATTCCTTGTTAATAATCTGTTACACATGCACGTAGTA
ATTCTTAAACCAATATAACAGATTGAGCCACGTCAGCTAGCTATAACAAA
CTGAGCCACGTCAGCTTAGGGAGCTAATCTGCTACAGTCCAACACACAGT
AACAATCATGTGCTCGCTTCCTCTGTTTCATCACAATTAACCAGTTTCAC
TAACAGTGGGACCCGTTCATGCAGAATTTCGGTTGTTGAGCTCATTACTG
AAAGTTATTCAAATTCTGGTAGGAATTTCTCCTGCAACTTGACCAGTACT
CTGCTACAAGCTTGGAAAAGGAGGAATTAGTTTCCATAAGCTTTGATGGT
TCATCATACTCCAACAATTTTCCATATGAGAGCACCATGACCATGTCACT
ATCAATAACAGTTGGTACTCTATGAGCTACCGTTATCACTGTGCAGTTGG
AGAATTCCTGCCTGATAATTCTCTGTAGAATAGCATCTGTTGCGGAATCA
ATGGAAGCGTTAGCTTCATCCAGAACTAGAATTCTATTTCTCTTTAGGAG
GACTCTTCCAAGGCAAAAGAGTTGGCGTTGCCCCGCGCTCCAATTTTCAC
CTTCATCACTCACAGATGAGTCCAGCTTATTGGGCAGGCTGCTGATAGTT
GTCTTAAGCTGACACTTCTCCAGAGCCTTCCATATTTCATCATCTG
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