FC877120

Overview
NameFC877120
Unique NameFC877120
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length812
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC877120 vs. ExPASy Swiss-Prot
Match: DNAJ_BACTN (Chaperone protein dnaJ OS=Bacteroides thetaiotaomicron GN=dnaJ PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.284e-11
Identity = 55/238 (23.11%), Postives = 111/238 (46.64%), Query Frame = 2
Query:  110 LKVSLEDLYNGTSKKLSLSRNV-IXXXXXXXXXXXXXXXXXXXXQGSGMKVSIRH--LGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEADEAPDT-VTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGR---QLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFTVDFPESLSPDQCRMLE 802
            +K++L+++  G  KK  L + V                      +GSG  +  +   LG     Q +  C  C G G+ I  K++C +C G+ ++  ++V+ V +  G+  G +++  G+ +      V GD++ +++++ HP   R  +DL     LS   A  G    I  +DG+   ++   +QPG+V++      +  +G+P     +  G L ++ ++  PE+L+ ++   LE
Sbjct:  144 VKMTLKEISTGVEKKFKLKKYVPCNHCHGTGAEGDGGSETCPTCKGSGSVIRNQQTILGT---MQTRTTCPTCNGEGKII--KNKCKECGGDGIVYGEEVVTVKIPAGVAEGMQLSMGGKGNAGKHNGVPGDLLILVEEEPHPDLIRDENDLIYNLLLSFPTAALGGAVEIPTIDGKVKVKIDSGTQPGKVLR------LRGKGLPNV-NGYGTGDLLVNISIYVPEALNKEEKSTLE 369          
BLAST of FC877120 vs. ExPASy Swiss-Prot
Match: DNAJ_BACCN (Chaperone protein dnaJ OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.284e-11
Identity = 45/165 (27.27%), Postives = 80/165 (48.48%), Query Frame = 2
Query:  308 CNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEADEAPD-TVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFTVDFPESLSPDQCRML 799
            C  C GTG+ I  K++C  C G   ++++K + V +  G+ NGQ+I   G+ +   +    GD+  V+  +EH  F+R GD +  E  L+  +A  G +  +  + G+  L    P       +F+ +  +G P   R + +G  Y+   V  P +L+  Q  +L
Sbjct:  184 CRHCSGTGQMI--KEKCTTCHGTGKVRKRKKINVKIPAGIDNGQQIRVAGKGEAGVNGGPAGDLYVVVHVREHEFFERDGDHIICEMPLTFAQAALGAEVEVPTVHGKVKL--KIPAGTQTGTEFR-LKGKGAPNV-RGYGQGDQYVVVRVVVPTNLTAHQKELL 342          
BLAST of FC877120 vs. ExPASy Swiss-Prot
Match: DNAJ1_STRCO (Chaperone protein dnaJ 1 OS=Streptomyces coelicolor GN=dnaJ1 PE=3 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 8.284e-11
Identity = 44/159 (27.67%), Postives = 73/159 (45.91%), Query Frame = 2
Query:  305 PCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEADEAP-DTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFTVDFPESLS 778
            PC +CKG G  +  +D C  CKG    +  + ++V +  G+ +GQ+I   G+          GD+  V+  KEHP F R+GD+L V   ++  EA  G +  +  L G  + +K   G        + +   G    ++   RG L +   V  P+ L+
Sbjct:  217 PCPDCKGRG--LIAEDPCEVCKGSGRAKSSRTMQVRIPAGVSDGQRIRLRGKGTPGERGGPAGDLYVVVHVKEHPVFGRRGDNLTVTVPVTYAEAALGGEVRVPTLGGPSVTLKLPAG----TPNGRTMRARGKGAVRKDGTRGDLLVTVEVSVPKDLT 369          
The following BLAST results are available for this feature:
BLAST of FC877120 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 393
Match NameE-valueIdentityDescription
DNAJ_BACTN8.284e-1123.11Chaperone protein dnaJ OS=Bacteroides thetaiotaomi... [more]
DNAJ_BACCN8.284e-1127.27Chaperone protein dnaJ OS=Bacillus cereus subsp. c... [more]
DNAJ1_STRCO8.284e-1127.67Chaperone protein dnaJ 1 OS=Streptomyces coelicolo... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN2AE03RM1 EHR Citrus clementina cDNA clone KN0AAN2AE03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877120 ID=FC877120; Name=FC877120; organism=Citrus clementina; type=EST; length=812bp
GCACGAGGACCCATTCGACATATTCCAATCCTTCTTCGGTGGCAGCCCAT
TTGGTGGTGGGAGCAGCAGAGGAAGAAGGCAAAGGAGGGGAGAGGATGTA
ATCCATCCCCTCAAGGTTTCTTTGGAGGATCTCTACAATGGGACATCTAA
GAAGCTCTCGCTCTCCCGCAATGTAATCTGCACCAAGTGCAAAGGGAAGG
GGTCTAAGTCAGGTGCATCAATGAAATGTTCTGGCTGCCAGGGATCTGGA
ATGAAAGTTTCAATAAGACACCTTGGCCCCTCTATGATTCAACAAATGCA
GCATCCTTGCAATGAGTGCAAGGGTACTGGAGAAACAATCAATGACAAGG
ATCGCTGCCCACAATGTAAGGGTGAGAAGGTCATTCAGGAGAAAAAAGTC
TTGGAGGTTATTGTTGAGAAGGGGATGCAAAATGGACAGAAGATTACGTT
CCCTGGAGAAGCTGATGAAGCGCCCGACACTGTCACAGGTGACATTGTAT
TTGTTCTACAACAGAAAGAGCACCCGAAATTTAAGCGAAAGGGTGATGAC
CTATTTGTTGAGCACACCCTGTCACTGACAGAAGCTCTCTGTGGCTTTCA
ATTTGTAATAACTCATTTGGATGGCCGGCAACTCCTCATCAAATCCCAGC
CTGGGGAAGTAGTCAAGCCGGACCAATTCAAGGCCATAAATGATGAAGGA
ATGCCTATGTATCAGAGGCCATTTATGAGGGGCAAACTGTACATTCATTT
CACTGTTGACTTCCCTGAGTCACTGAGCCCAGACCAGTGCAGGATGCTGG
AAACCGTACTAC
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