FC877210

Overview
NameFC877210
Unique NameFC877210
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length806
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC877210 vs. ExPASy Swiss-Prot
Match: MPV17_MOUSE (Protein Mpv17 OS=Mus musculus GN=Mpv17 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.648e-11
Identity = 47/163 (28.83%), Postives = 69/163 (42.33%), Query Frame = 1
Query:  166 WRKYLIQLQVHPLRTKAITAGVLAGCSDAIAQKI---SGVXXXXXXXXXXXXXFDFGYGVPFGHFLNKFLDAIFKGRDNKSVAKKVLLEQLIFSPWINFLFMTYFGLVVEGKPWGSVMKKVRKDYPAVQFTSWKVWPTVTWVNFQYVPQQFRELFFSLVASCW 645
            WR Y   L  HP + + +TAG L G  D I+Q++    G+                G+  P      K LD +  G       KK+LL+Q  F+P     F+   G ++ G        K+++DYP    T++ +WP V   NF  VP  +R      VA  W
Sbjct:    4 WRAYQRALAAHPWKVQVLTAGSLMGVGDMISQQLVERRGLQQHQAGRTLTMVSLGCGFVGPVVGGWYKVLDHLIPGTTKVHALKKMLLDQGGFAPCFLGCFLPLVG-ILNGMSAQDNWAKLKRDYPDALITNYYLWPAVQLANFYLVPLHYRLAVVQCVAIVW 165          
BLAST of FC877210 vs. ExPASy Swiss-Prot
Match: SYM1_NEUCR (Protein sym-1 OS=Neurospora crassa GN=sym-1 PE=3 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 6.261e-11
Identity = 49/164 (29.88%), Postives = 75/164 (45.73%), Query Frame = 1
Query:  175 YLIQLQVHPLRTKAITAGVLAGCSDAIAQKISGVXXXXXXXXXXXXXFDFGYGVPFG-------HFLNKFLDAIFKGRDNKSVAKKVLLEQLIFSPWINFLFMTYFGLVVEGKPWGSVMKKVRKDYPAVQFTSWKVWPTVTWVNFQYVPQQFRELFFSLVASCW 645
            Y  QL   PL T+A+T  +L G  D  AQ++                     G  FG        FL K +  +  G  NK++  +V  +Q +F+P    +F+     V+EG     V +K++K+Y     T+W VWP V  VNF+ VP   R LF ++++  W
Sbjct:    5 YKAQLAARPLLTQAVTTSILFGVGDVAAQQLVDRRGLSNHDLTRTGRMVLYGGAVFGPAATTWFRFLQKRV--VVPGSTNKTILARVAADQGLFAPTFIGIFLGSMA-VLEGT---DVKEKLQKNYWEALSTNWMVWPFVQMVNFKVVPLDHRVLFVNVISIGW 162          
BLAST of FC877210 vs. ExPASy Swiss-Prot
Match: MPV17_HUMAN (Protein Mpv17 OS=Homo sapiens GN=MPV17 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.261e-11
Identity = 47/163 (28.83%), Postives = 67/163 (41.10%), Query Frame = 1
Query:  166 WRKYLIQLQVHPLRTKAITAGVLAGCSDAIAQKI---SGVXXXXXXXXXXXXXFDFGYGVPFGHFLNKFLDAIFKGRDNKSVAKKVLLEQLIFSPWINFLFMTYFGLVVEGKPWGSVMKKVRKDYPAVQFTSWKVWPTVTWVNFQYVPQQFRELFFSLVASCW 645
            WR Y   L  HP + + +TAG L G  D I+Q++    G+                G+  P      K LD    G       KK+LL+Q  F+P     F+   G  + G        K+++DYP    T++ +WP V   NF  VP  +R      VA  W
Sbjct:    4 WRAYQRALAAHPWKVQVLTAGSLMGLGDIISQQLVERRGLQEHQRGRTLTMVSLGCGFVGPVVGGWYKVLDRFIPGTTKVDALKKMLLDQGGFAPCFLGCFLPLVG-ALNGLSAQDNWAKLQRDYPDALITNYYLWPAVQLANFYLVPLHYRLAVVQCVAVIW 165          
The following BLAST results are available for this feature:
BLAST of FC877210 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
MPV17_MOUSE1.648e-1128.83Protein Mpv17 OS=Mus musculus GN=Mpv17 PE=2 SV=1[more]
SYM1_NEUCR6.261e-1129.88Protein sym-1 OS=Neurospora crassa GN=sym-1 PE=3 S... [more]
MPV17_HUMAN6.261e-1128.83Protein Mpv17 OS=Homo sapiens GN=MPV17 PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionKN0AAN3DH02RM1 EHR Citrus clementina cDNA clone KN0AAN3DH02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877210 ID=FC877210; Name=FC877210; organism=Citrus clementina; type=EST; length=806bp
TGCAGATCAAACCAAGTGAAACCAGCTTGTCATTTCCTTAACTCAATTTC
TTTATCATCGCATTGTGGTGACTCCTCTCTTAACATTGAGCTTTTGGAGA
GAAGTTATTGTTGATCATCACAGGCTTCACAACCGCCAGCCATGTCTAAT
ATAGTCAAAGAAGCTTGGAGAAAATATCTTATACAACTCCAAGTTCACCC
TTTGAGAACCAAGGCAATCACAGCTGGGGTACTAGCTGGGTGTAGTGATG
CAATTGCCCAGAAGATTTCTGGGGTCAAAAAGCTTCAACTGAAAAGATTG
CTGCTTCTTATGCTTTTTGATTTCGGATATGGAGTACCATTTGGGCATTT
TCTTAACAAGTTCTTGGATGCCATTTTCAAGGGAAGGGACAACAAATCTG
TTGCAAAGAAGGTATTATTGGAGCAACTAATATTTTCGCCTTGGATCAAC
TTTCTGTTCATGACTTACTTTGGCTTGGTGGTTGAAGGAAAACCATGGGG
TTCAGTCATGAAGAAAGTTCGAAAGGACTATCCAGCTGTTCAGTTTACTT
CATGGAAGGTTTGGCCAACTGTTACTTGGGTGAATTTCCAGTACGTCCCT
CAGCAATTCCGAGAACTCTTTTTCAGCTTGGTTGCCTCCTGCTGGTGGCT
ATCTTCATCAATTTGAAAGCTGAATCCGCTGCAATAAAGAAGGACTAGAG
GGAGCCTCCAAGGGGTCTGGCCGGTAGAGTGATTTTCAAGTAGCCGAGTC
TAAATCCTGAGGAAAGGAGGGATTTAAAAAACTGGTTTCAGTTTTGGTCA
ACCTTT
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