FC877241

Overview
NameFC877241
Unique NameFC877241
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length410
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC877241 vs. ExPASy Swiss-Prot
Match: ZC3HF_CHICK (Zinc finger CCCH domain-containing protein 15 OS=Gallus gallus GN=ZC3H15 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.510e-19
Identity = 55/127 (43.31%), Postives = 72/127 (56.69%), Query Frame = 2
Query:   65 MPPKQQS-------KAELAKKQKIVEDKTFGLKNKNKSKNVQ--KYVQNLKQNVQPKPDQS---KVXXXXXXXXXXXXXXXLNDLFKIAVSQPKVPVGVDPXSILCEFYKAGQCQKGFKCKFSHDLN 409
            MPPK+Q        KA+  KK+KI+EDKTFGLKNK  +K  +  K V +L +  Q  P Q+   +                LN+LFK  V+  K+  G DP S++C F+K GQC KG KCKFSHDL+
Sbjct:    1 MPPKKQQQPAGSSKKADQKKKEKIIEDKTFGLKNKKGAKQQKFFKAVTHLVKFGQQYPRQAAQTESEKKLKKEDKKKELQELNELFKPVVAAQKISKGADPKSVVCAFFKQGQCTKGDKCKFSHDLS 127          
BLAST of FC877241 vs. ExPASy Swiss-Prot
Match: ZC3HF_DICDI (Zinc finger CCCH domain-containing protein 15 homolog OS=Dictyostelium discoideum GN=DDB_G0292410 PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.727e-18
Identity = 56/122 (45.90%), Postives = 68/122 (55.74%), Query Frame = 2
Query:   65 MPPKQ-QSKAELAK-KQKIVEDKTFGLKNKNKSKNVQKYVQNLKQNV-----QPKPDQSKVXXXXXXXXXXXXXXXLNDLFKIAVSQPKVPVGVDPXSILCEFYKAG-QCQKGFKCKFSHDL 406
            MPPKQ QSK  + K K+K VEDKTFGLKNKNKSK V  YV  ++  V     Q K    K                   +    + Q KVP+GVDP SI+CE++K G  C KG +CKF+HDL
Sbjct:    1 MPPKQAQSKKTVEKEKKKKVEDKTFGLKNKNKSKKVAAYVSQVEAQVKHSGLQNKEAALKEKAKRDKELAEKAKKEAESILVNTIVQSKVPLGVDPKSIVCEYFKQGVTCPKGNRCKFAHDL 122          
BLAST of FC877241 vs. ExPASy Swiss-Prot
Match: ZC3HF_DROME (Zinc finger CCCH domain-containing protein 15 homolog OS=Drosophila melanogaster GN=CG8635 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.868e-18
Identity = 52/121 (42.98%), Postives = 68/121 (56.20%), Query Frame = 2
Query:   62 KMPPKQQSKAELAKKQKIVEDKTFGLKNKNKSKNVQKYVQNLKQNVQ-----PKPDQSKVXXXXXXXXXXXXXXXLNDLFKIAVSQPKVPVGVDPXSILCEFYKAGQCQKGFKCKFSHDLN 409
            K PP    K E  KK+K++EDKTFGLKNK  +K  QK++Q +++ VQ     P+ D  K                L  +FK   +Q KV  G DP S++C F+K G C KG KCKFSHDL+
Sbjct:    5 KAPPGPSKKTEQKKKEKVIEDKTFGLKNKKGNKQ-QKFIQQVQKQVQSGGQHPRQDGDKRKEEKEKKLAEQREMAL--IFKPVQTQ-KVEKGTDPKSVVCAFFKQGTCTKGDKCKFSHDLS 121          
BLAST of FC877241 vs. ExPASy Swiss-Prot
Match: ZC3HF_DROPS (Zinc finger CCCH domain-containing protein 15 homolog OS=Drosophila pseudoobscura pseudoobscura GN=GA21225 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.155e-17
Identity = 49/122 (40.16%), Postives = 66/122 (54.10%), Query Frame = 2
Query:   65 MPPKQ-----QSKAELAKKQKIVEDKTFGLKNKNKSKNVQKYVQNLKQNVQPKPDQSKVXXXXXXXXXXXXXXXLNDLFKI--AVSQPKVPVGVDPXSILCEFYKAGQCQKGFKCKFSHDLN 409
            MPPK+       K E  KK+K++EDKTFGLKNK  +K  QK++Q +++ VQ      +                L ++  I   V   KV  G DP S++C F+K G C KG KCKFSHDL+
Sbjct:    1 MPPKKAPAGPSKKTEQKKKEKVIEDKTFGLKNKKGNKQ-QKFIQQVQKQVQAGGHHPRQDGDKKKDEKEKKLADLREMASIFKPVQTQKVDKGTDPKSVVCAFFKQGLCTKGDKCKFSHDLS 121          
BLAST of FC877241 vs. ExPASy Swiss-Prot
Match: ZC3HF_CAEEL (Zinc finger CCCH domain-containing protein 15 homolog OS=Caenorhabditis elegans GN=F27D4.4 PE=2 SV=3)

HSP 1 Score: 87.0409 bits (214), Expect = 3.155e-17
Identity = 49/117 (41.88%), Postives = 66/117 (56.41%), Query Frame = 2
Query:   65 MPPKQQS---KAELAKKQKIVEDKTFGLKNKNKSKNVQKYVQNLKQNVQPKPDQSKVXXXXXXXXXXXXXXXLNDLFKIAVSQPKVPVGVDPXSILCEFYKAGQCQKGFKCKFSHDL 406
            MPPKQQ    K+E  +K+K++EDKTFGLKNK  +KN QK+V  ++  V+    +  +               L+    +   + KV   VDP S+LC F+K G C KG KCKFSHDL
Sbjct:    1 MPPKQQGPSKKSEQKRKEKVIEDKTFGLKNKKGNKN-QKFVAQVENQVRNNNTRMDLVRQQEAAKKKEKDELLDIANLLKPVEQKVAKDVDPKSLLCVFFKQGLCGKGAKCKFSHDL 116          
BLAST of FC877241 vs. ExPASy Swiss-Prot
Match: ZC3HF_CAEBR (Zinc finger CCCH domain-containing protein 15 homolog OS=Caenorhabditis briggsae GN=CBG00292 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.382e-17
Identity = 49/116 (42.24%), Postives = 65/116 (56.03%), Query Frame = 2
Query:   65 MPPKQ--QSKAELAKKQKIVEDKTFGLKNKNKSKNVQKYVQNLKQNVQPKPDQSKVXXXXXXXXXXXXXXXLNDLFKIAVSQPKVPVGVDPXSILCEFYKAGQCQKGFKCKFSHDL 406
            MPPKQ    KAE  +K+K++EDKTFGLKNK  +KN QK+V  ++  V+    +  +               L+    +   + KV   VDP S+LC F+K G C KG KCKFSHDL
Sbjct:    1 MPPKQAPSKKAENKRKEKVIEDKTFGLKNKKGNKN-QKFVAQIENQVRNNNTRMDLVRQQEAAKKKEKDELLDIQNLLKPVEQKVAKDVDPKSLLCVFFKQGLCGKGAKCKFSHDL 115          
The following BLAST results are available for this feature:
BLAST of FC877241 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
ZC3HF_CHICK7.510e-1943.31Zinc finger CCCH domain-containing protein 15 OS=G... [more]
ZC3HF_DICDI3.727e-1845.90Zinc finger CCCH domain-containing protein 15 homo... [more]
ZC3HF_DROME4.868e-1842.98Zinc finger CCCH domain-containing protein 15 homo... [more]
ZC3HF_DROPS3.155e-1740.16Zinc finger CCCH domain-containing protein 15 homo... [more]
ZC3HF_CAEEL3.155e-1741.88Zinc finger CCCH domain-containing protein 15 homo... [more]
ZC3HF_CAEBR5.382e-1742.24Zinc finger CCCH domain-containing protein 15 homo... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAN2BC10RM1 EHR Citrus clementina cDNA clone KN0AAN2BC10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877241 ID=FC877241; Name=FC877241; organism=Citrus clementina; type=EST; length=410bp
GCACGAGGAATTAAATCAAGGATATTTTATTTTGTCTTGTTATTGAATTT
GATGATCATAAAAGATGCCGCCGAAGCAGCAATCGAAAGCAGAATTAGCG
AAGAAGCAGAAGATCGTCGAAGACAAGACCTTCGGTCTTAAGAACAAAAA
CAAAAGCAAAAACGTTCAGAAATATGTTCAGAATCTCAAACAGAACGTTC
AGCCAAAACCCGACCAGTCTAAGGTCGCCGCCAAGAAAAAGAAGGAGGAA
GAGAAGGCTAAAGAGAAAGAGCTGAATGATCTGTTCAAGATTGCTGTTAG
TCAGCCTAAAGTTCCAGTTGGTGTTGATCCTAANTCTATATTGTGCGAGT
TTTATAAAGCGGGACAGTGTCAGAAAGGTTTTAAATGCAAATTCTCACAT
GATTTGAATG
back to top