FC877275

Overview
NameFC877275
Unique NameFC877275
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length467
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC877275 vs. ExPASy Swiss-Prot
Match: UBIQ_ICTPU (Ubiquitin OS=Ictalurus punctatus GN=rps27a PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.463e-11
Identity = 36/52 (69.23%), Postives = 39/52 (75.00%), Query Frame = 1 
Query:   25 NLSVKIEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 177
            N+  KI+DKE I  DQQR IFAGK+LEDGRTL DYNI   STLH V R RGG
Sbjct:   25 NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of FC877275 vs. ExPASy Swiss-Prot
Match: UBIQ_HUMAN (Ubiquitin OS=Homo sapiens GN=RPS27A PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.463e-11
Identity = 36/52 (69.23%), Postives = 39/52 (75.00%), Query Frame = 1 
Query:   25 NLSVKIEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 177
            N+  KI+DKE I  DQQR IFAGK+LEDGRTL DYNI   STLH V R RGG
Sbjct:   25 NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of FC877275 vs. ExPASy Swiss-Prot
Match: UBIQ_HORSE (Ubiquitin OS=Equus caballus GN=UBB PE=3 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 3.463e-11
Identity = 36/52 (69.23%), Postives = 39/52 (75.00%), Query Frame = 1 
Query:   25 NLSVKIEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 177
            N+  KI+DKE I  DQQR IFAGK+LEDGRTL DYNI   STLH V R RGG
Sbjct:   25 NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of FC877275 vs. ExPASy Swiss-Prot
Match: UBIQ_GORGO (Ubiquitin OS=Gorilla gorilla gorilla GN=UBB PE=3 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 3.463e-11
Identity = 36/52 (69.23%), Postives = 39/52 (75.00%), Query Frame = 1 
Query:   25 NLSVKIEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 177
            N+  KI+DKE I  DQQR IFAGK+LEDGRTL DYNI   STLH V R RGG
Sbjct:   25 NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of FC877275 vs. ExPASy Swiss-Prot
Match: UBIQ_GEOCY (Ubiquitin OS=Geodia cydonium PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.463e-11
Identity = 36/52 (69.23%), Postives = 39/52 (75.00%), Query Frame = 1 
Query:   25 NLSVKIEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 177
            N+  KI+DKE I  DQQR IFAGK+LEDGRTL DYNI   STLH V R RGG
Sbjct:   25 NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of FC877275 vs. ExPASy Swiss-Prot
Match: UBIQ_FELCA (Ubiquitin OS=Felis catus GN=UBA52 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.463e-11
Identity = 36/52 (69.23%), Postives = 39/52 (75.00%), Query Frame = 1 
Query:   25 NLSVKIEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 177
            N+  KI+DKE I  DQQR IFAGK+LEDGRTL DYNI   STLH V R RGG
Sbjct:   25 NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of FC877275 vs. ExPASy Swiss-Prot
Match: UBIQ_ENCCU (Ubiquitin OS=Encephalitozoon cuniculi GN=ECU02_0740i PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.463e-11
Identity = 36/52 (69.23%), Postives = 39/52 (75.00%), Query Frame = 1 
Query:   25 NLSVKIEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 177
            N+  KI+DKE I  DQQR IFAGK+LEDGRTL DYNI   STLH V R RGG
Sbjct:   25 NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of FC877275 vs. ExPASy Swiss-Prot
Match: UBIQ_EIMBO (Ubiquitin OS=Eimeria bovis PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.463e-11
Identity = 36/52 (69.23%), Postives = 39/52 (75.00%), Query Frame = 1 
Query:   25 NLSVKIEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 177
            N+  KI+DKE I  DQQR IFAGK+LEDGRTL DYNI   STLH V R RGG
Sbjct:   25 NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of FC877275 vs. ExPASy Swiss-Prot
Match: UBIQ_DROME (Ubiquitin OS=Drosophila melanogaster GN=RpL40 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.463e-11
Identity = 36/52 (69.23%), Postives = 39/52 (75.00%), Query Frame = 1 
Query:   25 NLSVKIEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 177
            N+  KI+DKE I  DQQR IFAGK+LEDGRTL DYNI   STLH V R RGG
Sbjct:   25 NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of FC877275 vs. ExPASy Swiss-Prot
Match: UBIQ_DICDI (Ubiquitin OS=Dictyostelium discoideum GN=ubqA PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.463e-11
Identity = 36/52 (69.23%), Postives = 39/52 (75.00%), Query Frame = 1 
Query:   25 NLSVKIEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 177
            N+  KI+DKE I  DQQR IFAGK+LEDGRTL DYNI   STLH V R RGG
Sbjct:   25 NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
The following BLAST results are available for this feature:
BLAST of FC877275 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
UBIQ_ICTPU3.463e-1169.23Ubiquitin OS=Ictalurus punctatus GN=rps27a PE=3 SV... [more]
UBIQ_HUMAN3.463e-1169.23Ubiquitin OS=Homo sapiens GN=RPS27A PE=1 SV=1[more]
UBIQ_HORSE3.463e-1169.23Ubiquitin OS=Equus caballus GN=UBB PE=3 SV=2[more]
UBIQ_GORGO3.463e-1169.23Ubiquitin OS=Gorilla gorilla gorilla GN=UBB PE=3 S... [more]
UBIQ_GEOCY3.463e-1169.23Ubiquitin OS=Geodia cydonium PE=3 SV=1[more]
UBIQ_FELCA3.463e-1169.23Ubiquitin OS=Felis catus GN=UBA52 PE=3 SV=1[more]
UBIQ_ENCCU3.463e-1169.23Ubiquitin OS=Encephalitozoon cuniculi GN=ECU02_074... [more]
UBIQ_EIMBO3.463e-1169.23Ubiquitin OS=Eimeria bovis PE=2 SV=1[more]
UBIQ_DROME3.463e-1169.23Ubiquitin OS=Drosophila melanogaster GN=RpL40 PE=1... [more]
UBIQ_DICDI3.463e-1169.23Ubiquitin OS=Dictyostelium discoideum GN=ubqA PE=1... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN2BF11RM1 EHR Citrus clementina cDNA clone KN0AAN2BF11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877275 ID=FC877275; Name=FC877275; organism=Citrus clementina; type=EST; length=467bp
TTTTTCTTCCATGAAAGGCCTCCTAATCTCTCTGTCAAGATCGAGGACAA
GGAAGAGATCCTACGAGACCAGCAGAGGTTCATCTTTGCTGGCAAACGAC
TCGAGGATGGTCGCACACTTGTAGACTACAACATCCACGGGTCAACCCTT
CATTCGGTCCGCCGTTTCAGGGGTGGCATGCAGATATTTGTGAAAACCCT
GACCGGCAAAACATAAATTTGAAGGTCGAAAGCTCTGACACAATCGACAA
TGTCAAGGCTAAGATCCAGGACAAGAAGGGAACTCCACCGGACCAGCAGA
GGCAGATCTTTTGGTTTGTGTTTGGTTGGGGTAGTTTGTGGATGCCTCTC
CTGAGGTTTGACCTTTGANAATGTATCTGGACGTGTATAAGCGTAAAAAA
TGTATCTGGACGTGTATAAGCGTAGAAAATGTATCTGGACGTGTATAATC
CGTGAAAATGTATCTGG
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