FC877280
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC877280 vs. ExPASy Swiss-Prot
Match: TRPA_PORYE (Tryptophan synthase alpha chain OS=Porphyra yezoensis GN=trpA PE=3 SV=1) HSP 1 Score: 246.899 bits (629), Expect = 9.770e-65 Identity = 117/247 (47.37%), Postives = 173/247 (70.04%), Query Frame = 3 Query: 18 ALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESTTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAXSLKSAL 758 ALIP+ITAGDPDL +T +AL++LDS G+DIIELG+PYSDPLADGP+IQ A+ R+L +G N N ILSM+K V I PI LFTYYNP+L G++NF+ + + GIRGL++PD+P+EE+E + IEL+L PT+ +R+ I++ + G +YLVS+ GVTG ++ ++ ++ L +K T K + +GFGIS E ++++ GW +G+++GSA VK L PE GL++++ F K+A+ Sbjct: 16 ALIPFITAGDPDLVSTGKALQILDSYGADIIELGLPYSDPLADGPIIQEASNRALKQGINLNKILSMVKTVNMTIKAPIVLFTYYNPVLHLGINNFIYAISNAGIRGLLIPDLPIEESEYVISVCNLFNIELILLLAPTSSRERISKIIKRAPGCIYLVSTTGVTGQKSQLTSQLKELTETVKTMTNKSIILGFGISTTEQIKEIKGWNINGIVIGSAFVKRL-SGNVPEAGLEQIQSFCQDAKNAI 261
BLAST of FC877280 vs. ExPASy Swiss-Prot
Match: TRPA_SYNPX (Tryptophan synthase alpha chain OS=Synechococcus sp. (strain WH8102) GN=trpA PE=3 SV=1) HSP 1 Score: 242.662 bits (618), Expect = 1.843e-63 Identity = 126/236 (53.39%), Postives = 162/236 (68.64%), Query Frame = 3 Query: 12 KVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESTTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLL---GEAQSPEE 710 ++AL+P++ AGDPDL+TT+E L L + G+D++ELG+PYSDPLADGPVIQAAA R+LA GT +L ML + Q++ P+ LFTY NP+L G++ F G GLVVPD+PLEE E L A + ++LVL PTTP DRM I + S GF YLVS GVTG RA + V+ L+ E+K+S+ PVAVGFGIS + V+QV WGADG IVGSA+VK + GE Q EE Sbjct: 21 RLALMPFLMAGDPDLATTSEVLLSLQNSGADMVELGMPYSDPLADGPVIQAAAARALAAGTTPGKVLEMLTSLKGQLTIPVILFTYSNPLLNVGMEAFCERAAAAGAAGLVVPDLPLEEAERLSPLAEQQGLDLVLLVAPTTPADRMVRIGQRSRGFTYLVSVTGVTGERAQMETRVEGLVEELKQSSAVPVAVGFGISGADQVRQVRSWGADGAIVGSALVKRMAAAGEGQIAEE 256
BLAST of FC877280 vs. ExPASy Swiss-Prot
Match: TRPA_PROMP (Tryptophan synthase alpha chain OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=trpA PE=3 SV=1) HSP 1 Score: 241.121 bits (614), Expect = 5.361e-63 Identity = 114/248 (45.97%), Postives = 168/248 (67.74%), Query Frame = 3 Query: 12 KVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESTTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAXSLKSA 755 K+AL+P+I AGDP++ TT+E L L G+D+IELG+PYSDPLADGP+IQ +A+R+L GT ++ +L+ + ++ PI LFTY+NP+L G++NF +G+ GL++PD+PLEE + I+L+L PTTP++RMK I ++GF YLVS GVTG R + V+ L+ +++E + PVAVGFGIS PEHV +V WGADGVI+GSA VK + + + +E + ++ KF ++ A Sbjct: 30 KLALMPFIMAGDPNIETTSEILLKLQEKGADLIELGIPYSDPLADGPIIQLSASRALKSGTTLKNVIQLLESLKDKLHIPIILFTYFNPVLNFGLENFCELASKVGVSGLIIPDLPLEEAYKFSEIISSYSIDLILLVAPTTPSERMKIISNNTKGFTYLVSVTGVTGERNKMENRVENLITKLQEISINPVAVGFGISSPEHVNKVRKWGADGVIIGSAFVKRISNS-NEKEVVNQIGKFCEEMRKA 276
BLAST of FC877280 vs. ExPASy Swiss-Prot
Match: TRPA_GRATL (Tryptophan synthase alpha chain OS=Gracilaria tenuistipitata var. liui GN=trpA PE=3 SV=1) HSP 1 Score: 224.557 bits (571), Expect = 5.193e-58 Identity = 110/248 (44.35%), Postives = 162/248 (65.32%), Query Frame = 3 Query: 18 ALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESTTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMV-KLLGEAQSPEEGLKELEKFAXSLKSAL 758 ALIP+ITAG P++ +ALK+LD G+D+IELG+PYSD LADGP+IQ A+ +L +G +LS+L +V+P + PI +FTYYNP+L RGVD F+ + G +GL++PD+PLEE + + + IEL+LF PT+ R++ I S G +YLVSS GVTG R + +Q L IK +T K + +GFGI+ P+ + Q+ W DG++VGSA++ ++GE P++ L L F LK ++ Sbjct: 16 ALIPFITAGYPNIDICIKALKVLDREGADLIELGIPYSDALADGPIIQEASQAALKQGIYIEQVLSILTKVIPDLHAPIIIFTYYNPVLVRGVDKFICEISQAGAKGLIIPDLPLEEVDYILELCNLYSIELILFVAPTSSQSRIQLIASKSPGCIYLVSSCGVTGLRDNFDVKIQHLANNIKSTTNKLIMLGFGINNPDQISQIINWNIDGIVVGSAIITHIVGEL--PQDMLNSLAHFCKKLKYSI 261
BLAST of FC877280 vs. ExPASy Swiss-Prot
Match: TRPA_ANTSP (Tryptophan synthase alpha chain OS=Antithamnion sp. GN=trpA PE=3 SV=1) HSP 1 Score: 222.631 bits (566), Expect = 1.973e-57 Identity = 118/246 (47.97%), Postives = 163/246 (66.26%), Query Frame = 3 Query: 18 ALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESTTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAXSLKSA 755 ALIP+ITAG PD++TT +AL LDS G+DIIELG+PYSD LADG VIQ ++ +L GT + +L +L+ V +++ PI + YYNPILKRG++ F+ + +G +GL+VPD+PLEET+ L N+IELVLF PT+ R+ +I + S G +YLVSS GVTG R I V L IK+ + K + +GFGIS PEH++++ W DGV+VGSA VK L A ++ + + SLK A Sbjct: 16 ALIPFITAGYPDINTTIQALYELDSQGADIIELGIPYSDALADGSVIQHSSLIALQGGTYIDQVLHILEVVSTKLNTPIIILPYYNPILKRGIEKFIKQISLMGAKGLIVPDLPLEETDELIVICNDNQIELVLFVAPTSSMKRINSISKKSPGCIYLVSSTGVTGVRDDIDIKVMELSNYIKKVSNKFIMLGFGISTPEHIKKIMKWNIDGVVVGSAFVKKL-SALKIDDRISSISSLCKSLKKA 260
BLAST of FC877280 vs. ExPASy Swiss-Prot
Match: TRPA_THEPX (Tryptophan synthase alpha chain OS=Thermoanaerobacter sp. (strain X514) GN=trpA PE=3 SV=1) HSP 1 Score: 213.386 bits (542), Expect = 1.197e-54 Identity = 107/250 (42.80%), Postives = 163/250 (65.20%), Query Frame = 3 Query: 9 GKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESTTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAXSLKSAL 758 G+ ALI +ITAGDPD+ TT + + L+ GSDIIELG+PYSDPLADGP IQA++ R+L +G I+ +++++ + P+ YYN I K G+ F+ +D+GI GL++PD+P+EE + + +EA K I L+ PT+ +R+K I E +GFVY VS GVTGAR I ++ ++ + + T P A+GFGIS PE +++ + +DG+IVGSA+V+ + + + E L+E++ F SLK L Sbjct: 15 GRKALITFITAGDPDIETTYDIVLALEEAGSDIIELGIPYSDPLADGPTIQASSQRALNKGVKIPDIMKIVEKIRLKSDIPLVYLVYYNSIFKYGIQKFLKESKDVGIDGLIIPDLPIEERKDILEEADKYGIYLIPLVAPTS-KERIKLITENGKGFVYCVSITGVTGAREDIETDIEEYMKTVSQYTNMPKAIGFGISTPEMAKKLKDF-SDGIIVGSALVERIAKGYNKSEMLQEVKSFVSSLKEVL 262
BLAST of FC877280 vs. ExPASy Swiss-Prot
Match: TRPA_THEP3 (Tryptophan synthase alpha chain OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=trpA PE=3 SV=1) HSP 1 Score: 208.764 bits (530), Expect = 2.949e-53 Identity = 105/250 (42.00%), Postives = 162/250 (64.80%), Query Frame = 3 Query: 9 GKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESTTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAXSLKSAL 758 G+ ALI +ITAGDPD+ TT + + ++ G+DIIELG+PYSDPLADGP IQA++ R+L +G I+ +++++ + P+ YYN I K G+ F+ +D+GI GL++PD+PLEE + + +EA K I L+ PT+ +R+K I E +GFVY VS GVTGAR I ++ ++ + + T P A+GFGIS PE +++ + +DG+IVGSA+V+ + + + E L+E++ F LK L Sbjct: 15 GRKALITFITAGDPDIETTYDIVLAIEEVGADIIELGIPYSDPLADGPTIQASSQRALNKGVKIPDIMRIVEKIRFKSDIPLVYLVYYNSIFKYGIQKFLKESKDVGIDGLIIPDLPLEERKDILEEADKYGIYLIPLVAPTS-KERIKLITENGKGFVYCVSITGVTGAREDIETDIEEYMKTVSQYTNMPKAIGFGISTPEMAKKLKDF-SDGIIVGSALVERIAKGYNKSEMLQEVKSFVSILKEVL 262
BLAST of FC877280 vs. ExPASy Swiss-Prot
Match: TRPA_THETN (Tryptophan synthase alpha chain OS=Thermoanaerobacter tengcongensis GN=trpA PE=3 SV=1) HSP 1 Score: 206.453 bits (524), Expect = 1.463e-52 Identity = 105/250 (42.00%), Postives = 162/250 (64.80%), Query Frame = 3 Query: 9 GKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESTTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAXSLKSAL 758 GK ALI +ITAGDPD+ TT + + L+ G+DIIELG+PYSDPLADGP IQA++ R+LA+G I+ ++ + + PI YYN + K G++ F+ ++ G+ GL++PD+PLEE + + A K +I L+ PT+ +R+K I E +GFVY V+ GVTGAR I+ ++ +R + T+ P A+GFGIS PE +++ +DG++VGSA+V+ + + + E LKE+++F SL+ L Sbjct: 15 GKKALITFITAGDPDIDTTYDIVLALEEAGADIIELGIPYSDPLADGPTIQASSQRALAKGIKIKDIMDLVMRIREKSDIPIVYLVYYNSVFKYGIEKFLEDSKNAGVDGLIIPDLPLEERKEVLDVADKYEIYLIPLVAPTS-KERIKGITENGKGFVYCVTLTGVTGAREEITTDLEEYMRLVSSYTSMPKALGFGISGPEMARKLKSL-SDGIVVGSAIVERIAKGYNRCEMLKEVKEFVLSLREVL 262
BLAST of FC877280 vs. ExPASy Swiss-Prot
Match: TRPA_SYNAS (Tryptophan synthase alpha chain OS=Syntrophus aciditrophicus (strain SB) GN=trpA PE=3 SV=1) HSP 1 Score: 206.068 bits (523), Expect = 1.911e-52 Identity = 106/251 (42.23%), Postives = 151/251 (60.16%), Query Frame = 3 Query: 6 RGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESTTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAXSLKSAL 758 RG+ AL+ Y+TAGDPDL T E L L G DI+E+GVP+SDP ADGPVIQAAA R+L GT + IL M++++ I P+ LF YYNPI G + F + G+ GL+V D+PLEE E L+ + ++ + PTT +RM I ++GF+Y +S GVTG +V+ +R I+ + P+ VGFGIS PE +++A ADG+++GSA V+L+ E E + FA +K A+ Sbjct: 14 RGEKALVAYVTAGDPDLDKTREILVGLKEGGVDILEIGVPFSDPTADGPVIQAAAQRALKTGTTLSRILDMIQDLRKIIDLPVVLFGYYNPIYAYGTERFAERAKAAGVDGLLVVDLPLEEAEELRGKTDSKGLDFITLIAPTTSEERMCRIARRAQGFIYYISITGVTGTATPSRDNVEREIRRIRTHSDLPLVVGFGISTPEQARELASL-ADGIVIGSAFVRLIAENADSPELAARVSSFAREIKKAM 263
BLAST of FC877280 vs. ExPASy Swiss-Prot
Match: TRPA_SYMTH (Tryptophan synthase alpha chain OS=Symbiobacterium thermophilum GN=trpA PE=3 SV=1) HSP 1 Score: 205.297 bits (521), Expect = 3.260e-52 Identity = 106/251 (42.23%), Postives = 157/251 (62.55%), Query Frame = 3 Query: 3 TRGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEV-VPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESTTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAXSLKS 752 +RG+ LI Y+ AGDP L+TT + L G D++ELG+P+SDPLADGPVIQAA+ R+LA G N + +L ++ + + P+ + TYYN +L+ GV+NF G+ GL++PDVP+EE++ ++ A ++L+ F PT+P +R++ E + GF+Y VSS GVTG R + + ++ +K T PVAVGFGIS+PE V+QV AD IVGSA V+ GE E ++ + A LK+ Sbjct: 13 SRGEKGLIAYLAAGDPSLATTRRLVHALAEAGVDMVELGLPFSDPLADGPVIQAASQRALAAGANTDNVLELVAALRADGLQIPLLIMTYYNLVLRPGVENFCHRAAAAGVDGLILPDVPVEESDEIRAAAGAVGLDLIQFVAPTSPPERIRRAAELARGFIYAVSSTGVTGVRDRLPPQLTAMVEAVKAVTDTPVAVGFGISRPEQVRQVTA-VADAAIVGSAFVRHCGEGLPEHELVERVRILAEELKA 262 The following BLAST results are available for this feature:
BLAST of FC877280 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC877280 ID=FC877280; Name=FC877280; organism=Citrus clementina; type=EST; length=804bpback to top |