FC877280

Overview
NameFC877280
Unique NameFC877280
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length804
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC877280 vs. ExPASy Swiss-Prot
Match: TRPA_PORYE (Tryptophan synthase alpha chain OS=Porphyra yezoensis GN=trpA PE=3 SV=1)

HSP 1 Score: 246.899 bits (629), Expect = 9.770e-65
Identity = 117/247 (47.37%), Postives = 173/247 (70.04%), Query Frame = 3
Query:   18 ALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESTTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAXSLKSAL 758
            ALIP+ITAGDPDL +T +AL++LDS G+DIIELG+PYSDPLADGP+IQ A+ R+L +G N N ILSM+K V   I  PI LFTYYNP+L  G++NF+  + + GIRGL++PD+P+EE+E +        IEL+L   PT+  +R+  I++ + G +YLVS+ GVTG ++ ++  ++ L   +K  T K + +GFGIS  E ++++ GW  +G+++GSA VK L     PE GL++++ F    K+A+
Sbjct:   16 ALIPFITAGDPDLVSTGKALQILDSYGADIIELGLPYSDPLADGPIIQEASNRALKQGINLNKILSMVKTVNMTIKAPIVLFTYYNPVLHLGINNFIYAISNAGIRGLLIPDLPIEESEYVISVCNLFNIELILLLAPTSSRERISKIIKRAPGCIYLVSTTGVTGQKSQLTSQLKELTETVKTMTNKSIILGFGISTTEQIKEIKGWNINGIVIGSAFVKRL-SGNVPEAGLEQIQSFCQDAKNAI 261          
BLAST of FC877280 vs. ExPASy Swiss-Prot
Match: TRPA_SYNPX (Tryptophan synthase alpha chain OS=Synechococcus sp. (strain WH8102) GN=trpA PE=3 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 1.843e-63
Identity = 126/236 (53.39%), Postives = 162/236 (68.64%), Query Frame = 3
Query:   12 KVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESTTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLL---GEAQSPEE 710
            ++AL+P++ AGDPDL+TT+E L  L + G+D++ELG+PYSDPLADGPVIQAAA R+LA GT    +L ML  +  Q++ P+ LFTY NP+L  G++ F       G  GLVVPD+PLEE E L   A +  ++LVL   PTTP DRM  I + S GF YLVS  GVTG RA +   V+ L+ E+K+S+  PVAVGFGIS  + V+QV  WGADG IVGSA+VK +   GE Q  EE
Sbjct:   21 RLALMPFLMAGDPDLATTSEVLLSLQNSGADMVELGMPYSDPLADGPVIQAAAARALAAGTTPGKVLEMLTSLKGQLTIPVILFTYSNPLLNVGMEAFCERAAAAGAAGLVVPDLPLEEAERLSPLAEQQGLDLVLLVAPTTPADRMVRIGQRSRGFTYLVSVTGVTGERAQMETRVEGLVEELKQSSAVPVAVGFGISGADQVRQVRSWGADGAIVGSALVKRMAAAGEGQIAEE 256          
BLAST of FC877280 vs. ExPASy Swiss-Prot
Match: TRPA_PROMP (Tryptophan synthase alpha chain OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=trpA PE=3 SV=1)

HSP 1 Score: 241.121 bits (614), Expect = 5.361e-63
Identity = 114/248 (45.97%), Postives = 168/248 (67.74%), Query Frame = 3
Query:   12 KVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESTTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAXSLKSA 755
            K+AL+P+I AGDP++ TT+E L  L   G+D+IELG+PYSDPLADGP+IQ +A+R+L  GT    ++ +L+ +  ++  PI LFTY+NP+L  G++NF      +G+ GL++PD+PLEE     +      I+L+L   PTTP++RMK I   ++GF YLVS  GVTG R  +   V+ L+ +++E +  PVAVGFGIS PEHV +V  WGADGVI+GSA VK +  + + +E + ++ KF   ++ A
Sbjct:   30 KLALMPFIMAGDPNIETTSEILLKLQEKGADLIELGIPYSDPLADGPIIQLSASRALKSGTTLKNVIQLLESLKDKLHIPIILFTYFNPVLNFGLENFCELASKVGVSGLIIPDLPLEEAYKFSEIISSYSIDLILLVAPTTPSERMKIISNNTKGFTYLVSVTGVTGERNKMENRVENLITKLQEISINPVAVGFGISSPEHVNKVRKWGADGVIIGSAFVKRISNS-NEKEVVNQIGKFCEEMRKA 276          
BLAST of FC877280 vs. ExPASy Swiss-Prot
Match: TRPA_GRATL (Tryptophan synthase alpha chain OS=Gracilaria tenuistipitata var. liui GN=trpA PE=3 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 5.193e-58
Identity = 110/248 (44.35%), Postives = 162/248 (65.32%), Query Frame = 3
Query:   18 ALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESTTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMV-KLLGEAQSPEEGLKELEKFAXSLKSAL 758
            ALIP+ITAG P++    +ALK+LD  G+D+IELG+PYSD LADGP+IQ A+  +L +G     +LS+L +V+P +  PI +FTYYNP+L RGVD F+  +   G +GL++PD+PLEE + + +      IEL+LF  PT+   R++ I   S G +YLVSS GVTG R +    +Q L   IK +T K + +GFGI+ P+ + Q+  W  DG++VGSA++  ++GE   P++ L  L  F   LK ++
Sbjct:   16 ALIPFITAGYPNIDICIKALKVLDREGADLIELGIPYSDALADGPIIQEASQAALKQGIYIEQVLSILTKVIPDLHAPIIIFTYYNPVLVRGVDKFICEISQAGAKGLIIPDLPLEEVDYILELCNLYSIELILFVAPTSSQSRIQLIASKSPGCIYLVSSCGVTGLRDNFDVKIQHLANNIKSTTNKLIMLGFGINNPDQISQIINWNIDGIVVGSAIITHIVGEL--PQDMLNSLAHFCKKLKYSI 261          
BLAST of FC877280 vs. ExPASy Swiss-Prot
Match: TRPA_ANTSP (Tryptophan synthase alpha chain OS=Antithamnion sp. GN=trpA PE=3 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 1.973e-57
Identity = 118/246 (47.97%), Postives = 163/246 (66.26%), Query Frame = 3
Query:   18 ALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESTTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAXSLKSA 755
            ALIP+ITAG PD++TT +AL  LDS G+DIIELG+PYSD LADG VIQ ++  +L  GT  + +L +L+ V  +++ PI +  YYNPILKRG++ F+  +  +G +GL+VPD+PLEET+ L      N+IELVLF  PT+   R+ +I + S G +YLVSS GVTG R  I   V  L   IK+ + K + +GFGIS PEH++++  W  DGV+VGSA VK L  A   ++ +  +     SLK A
Sbjct:   16 ALIPFITAGYPDINTTIQALYELDSQGADIIELGIPYSDALADGSVIQHSSLIALQGGTYIDQVLHILEVVSTKLNTPIIILPYYNPILKRGIEKFIKQISLMGAKGLIVPDLPLEETDELIVICNDNQIELVLFVAPTSSMKRINSISKKSPGCIYLVSSTGVTGVRDDIDIKVMELSNYIKKVSNKFIMLGFGISTPEHIKKIMKWNIDGVVVGSAFVKKL-SALKIDDRISSISSLCKSLKKA 260          
BLAST of FC877280 vs. ExPASy Swiss-Prot
Match: TRPA_THEPX (Tryptophan synthase alpha chain OS=Thermoanaerobacter sp. (strain X514) GN=trpA PE=3 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 1.197e-54
Identity = 107/250 (42.80%), Postives = 163/250 (65.20%), Query Frame = 3
Query:    9 GKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESTTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAXSLKSAL 758
            G+ ALI +ITAGDPD+ TT + +  L+  GSDIIELG+PYSDPLADGP IQA++ R+L +G     I+ +++++  +   P+    YYN I K G+  F+   +D+GI GL++PD+P+EE + + +EA K  I L+    PT+  +R+K I E  +GFVY VS  GVTGAR  I   ++  ++ + + T  P A+GFGIS PE  +++  + +DG+IVGSA+V+ + +  +  E L+E++ F  SLK  L
Sbjct:   15 GRKALITFITAGDPDIETTYDIVLALEEAGSDIIELGIPYSDPLADGPTIQASSQRALNKGVKIPDIMKIVEKIRLKSDIPLVYLVYYNSIFKYGIQKFLKESKDVGIDGLIIPDLPIEERKDILEEADKYGIYLIPLVAPTS-KERIKLITENGKGFVYCVSITGVTGAREDIETDIEEYMKTVSQYTNMPKAIGFGISTPEMAKKLKDF-SDGIIVGSALVERIAKGYNKSEMLQEVKSFVSSLKEVL 262          
BLAST of FC877280 vs. ExPASy Swiss-Prot
Match: TRPA_THEP3 (Tryptophan synthase alpha chain OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=trpA PE=3 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 2.949e-53
Identity = 105/250 (42.00%), Postives = 162/250 (64.80%), Query Frame = 3
Query:    9 GKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESTTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAXSLKSAL 758
            G+ ALI +ITAGDPD+ TT + +  ++  G+DIIELG+PYSDPLADGP IQA++ R+L +G     I+ +++++  +   P+    YYN I K G+  F+   +D+GI GL++PD+PLEE + + +EA K  I L+    PT+  +R+K I E  +GFVY VS  GVTGAR  I   ++  ++ + + T  P A+GFGIS PE  +++  + +DG+IVGSA+V+ + +  +  E L+E++ F   LK  L
Sbjct:   15 GRKALITFITAGDPDIETTYDIVLAIEEVGADIIELGIPYSDPLADGPTIQASSQRALNKGVKIPDIMRIVEKIRFKSDIPLVYLVYYNSIFKYGIQKFLKESKDVGIDGLIIPDLPLEERKDILEEADKYGIYLIPLVAPTS-KERIKLITENGKGFVYCVSITGVTGAREDIETDIEEYMKTVSQYTNMPKAIGFGISTPEMAKKLKDF-SDGIIVGSALVERIAKGYNKSEMLQEVKSFVSILKEVL 262          
BLAST of FC877280 vs. ExPASy Swiss-Prot
Match: TRPA_THETN (Tryptophan synthase alpha chain OS=Thermoanaerobacter tengcongensis GN=trpA PE=3 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.463e-52
Identity = 105/250 (42.00%), Postives = 162/250 (64.80%), Query Frame = 3
Query:    9 GKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESTTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAXSLKSAL 758
            GK ALI +ITAGDPD+ TT + +  L+  G+DIIELG+PYSDPLADGP IQA++ R+LA+G     I+ ++  +  +   PI    YYN + K G++ F+   ++ G+ GL++PD+PLEE + +   A K +I L+    PT+  +R+K I E  +GFVY V+  GVTGAR  I+  ++  +R +   T+ P A+GFGIS PE  +++    +DG++VGSA+V+ + +  +  E LKE+++F  SL+  L
Sbjct:   15 GKKALITFITAGDPDIDTTYDIVLALEEAGADIIELGIPYSDPLADGPTIQASSQRALAKGIKIKDIMDLVMRIREKSDIPIVYLVYYNSVFKYGIEKFLEDSKNAGVDGLIIPDLPLEERKEVLDVADKYEIYLIPLVAPTS-KERIKGITENGKGFVYCVTLTGVTGAREEITTDLEEYMRLVSSYTSMPKALGFGISGPEMARKLKSL-SDGIVVGSAIVERIAKGYNRCEMLKEVKEFVLSLREVL 262          
BLAST of FC877280 vs. ExPASy Swiss-Prot
Match: TRPA_SYNAS (Tryptophan synthase alpha chain OS=Syntrophus aciditrophicus (strain SB) GN=trpA PE=3 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 1.911e-52
Identity = 106/251 (42.23%), Postives = 151/251 (60.16%), Query Frame = 3
Query:    6 RGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESTTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAXSLKSAL 758
            RG+ AL+ Y+TAGDPDL  T E L  L   G DI+E+GVP+SDP ADGPVIQAAA R+L  GT  + IL M++++   I  P+ LF YYNPI   G + F    +  G+ GL+V D+PLEE E L+ +     ++ +    PTT  +RM  I   ++GF+Y +S  GVTG       +V+  +R I+  +  P+ VGFGIS PE  +++A   ADG+++GSA V+L+ E     E    +  FA  +K A+
Sbjct:   14 RGEKALVAYVTAGDPDLDKTREILVGLKEGGVDILEIGVPFSDPTADGPVIQAAAQRALKTGTTLSRILDMIQDLRKIIDLPVVLFGYYNPIYAYGTERFAERAKAAGVDGLLVVDLPLEEAEELRGKTDSKGLDFITLIAPTTSEERMCRIARRAQGFIYYISITGVTGTATPSRDNVEREIRRIRTHSDLPLVVGFGISTPEQARELASL-ADGIVIGSAFVRLIAENADSPELAARVSSFAREIKKAM 263          
BLAST of FC877280 vs. ExPASy Swiss-Prot
Match: TRPA_SYMTH (Tryptophan synthase alpha chain OS=Symbiobacterium thermophilum GN=trpA PE=3 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 3.260e-52
Identity = 106/251 (42.23%), Postives = 157/251 (62.55%), Query Frame = 3
Query:    3 TRGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEV-VPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESTTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAXSLKS 752
            +RG+  LI Y+ AGDP L+TT   +  L   G D++ELG+P+SDPLADGPVIQAA+ R+LA G N + +L ++  +    +  P+ + TYYN +L+ GV+NF       G+ GL++PDVP+EE++ ++  A    ++L+ F  PT+P +R++   E + GF+Y VSS GVTG R  +   +  ++  +K  T  PVAVGFGIS+PE V+QV    AD  IVGSA V+  GE     E ++ +   A  LK+
Sbjct:   13 SRGEKGLIAYLAAGDPSLATTRRLVHALAEAGVDMVELGLPFSDPLADGPVIQAASQRALAAGANTDNVLELVAALRADGLQIPLLIMTYYNLVLRPGVENFCHRAAAAGVDGLILPDVPVEESDEIRAAAGAVGLDLIQFVAPTSPPERIRRAAELARGFIYAVSSTGVTGVRDRLPPQLTAMVEAVKAVTDTPVAVGFGISRPEQVRQVTA-VADAAIVGSAFVRHCGEGLPEHELVERVRILAEELKA 262          
The following BLAST results are available for this feature:
BLAST of FC877280 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TRPA_PORYE9.770e-6547.37Tryptophan synthase alpha chain OS=Porphyra yezoen... [more]
TRPA_SYNPX1.843e-6353.39Tryptophan synthase alpha chain OS=Synechococcus s... [more]
TRPA_PROMP5.361e-6345.97Tryptophan synthase alpha chain OS=Prochlorococcus... [more]
TRPA_GRATL5.193e-5844.35Tryptophan synthase alpha chain OS=Gracilaria tenu... [more]
TRPA_ANTSP1.973e-5747.97Tryptophan synthase alpha chain OS=Antithamnion sp... [more]
TRPA_THEPX1.197e-5442.80Tryptophan synthase alpha chain OS=Thermoanaerobac... [more]
TRPA_THEP32.949e-5342.00Tryptophan synthase alpha chain OS=Thermoanaerobac... [more]
TRPA_THETN1.463e-5242.00Tryptophan synthase alpha chain OS=Thermoanaerobac... [more]
TRPA_SYNAS1.911e-5242.23Tryptophan synthase alpha chain OS=Syntrophus acid... [more]
TRPA_SYMTH3.260e-5242.23Tryptophan synthase alpha chain OS=Symbiobacterium... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAN2BG06RM1 EHR Citrus clementina cDNA clone KN0AAN2BG06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877280 ID=FC877280; Name=FC877280; organism=Citrus clementina; type=EST; length=804bp
GCACGAGGGGCAAAGTGGCCCTTATTCCATACATCACTGCTGGTGATCCT
GACCTTTCAACCACCGCAGAAGCGTTGAAGTTGCTTGACTCTTGTGGATC
AGACATAATTGAACTGGGTGTTCCATATTCTGATCCTTTAGCAGATGGTC
CAGTCATCCAGGCTGCGGCTACACGATCTTTAGCAAGAGGAACCAACTTC
AATGCAATTCTTTCTATGTTGAAGGAGGTGGTTCCTCAAATATCTTGTCC
AATTGCTTTATTTACATATTACAACCCAATTCTGAAGCGAGGAGTTGATA
ATTTCATGTCCACAGTAAGAGACATTGGCATACGTGGGCTTGTGGTTCCA
GATGTCCCTCTGGAGGAGACTGAATCTTTACAGAAGGAAGCCATGAAAAA
TAAGATTGAGCTGGTACTTTTTACAACTCCCACCACTCCAACAGATCGAA
TGAAAGCCATTGTTGAAGCATCAGAGGGATTTGTCTATCTTGTAAGCTCA
ATTGGAGTTACTGGAGCTCGCGCTTCTATTAGTGGCCATGTTCAAACTCT
TTTAAGGGAAATTAAAGAGTCAACAACTAAGCCCGTTGCAGTTGGCTTTG
GCATATCAAAACCTGAGCATGTGCAACAAGTAGCAGGATGGGGAGCTGAT
GGTGTGATTGTTGGGAGTGCTATGGTGAAGCTATTGGGTGAAGCACAATC
TCCTGAGGAGGGACTGAAGGAGCTAGAAAAATTCGCANAATCGTTAAAAT
CTGCTCTCCCGTGAGAACAGTAATGTAGATCAGCAATAATGTTTGATCAA
GTGT
back to top