FC877280

Overview
NameFC877280
Unique NameFC877280
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length804
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC877280 vs. ExPASy Swiss-Prot
Match: TRPA_PSEE4 (Tryptophan synthase alpha chain OS=Pseudomonas entomophila (strain L48) GN=trpA PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 5.955e-46
Identity = 97/247 (39.27%), Postives = 147/247 (59.51%), Query Frame = 3
Query:    9 GKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEV-VPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESTTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAXSL 746
            G+ AL+ ++TAGDP    + E LK L + G+D+IELG+P++DP+ADG  IQ A  R+L  G      L M++E  V   + PI L  YYNPI + GV+ F++  ++ G+ GL++ D+P E    L   A    I+ +  TTPTT   R+  ++E S GFVY VS  GVTGA ++ + HV   +  ++  T  P++VGFGI  PE    +A   ADGV+VGSA+V  + +A+   + +K++     +L
Sbjct:   15 GRSALVTFVTAGDPGYDASLEILKGLPAAGADVIELGMPFTDPMADGVAIQLATLRALEAGQTLAKTLQMVREFRVGNQTTPIVLMGYYNPIHRFGVEQFVAEAKEAGVDGLIIVDLPPEHDAELATPAQAAGIDFIRLTTPTTDDARLPRVLERSSGFVYYVSVAGVTGAGSATTEHVTEAIARLRRHTDLPISVGFGIRTPEQAAAIARL-ADGVVVGSALVDKIAQAKDAGQAVKDVLSLCSAL 260          
BLAST of FC877280 vs. ExPASy Swiss-Prot
Match: TRPA_BACCZ (Tryptophan synthase alpha chain OS=Bacillus cereus (strain ZK / E33L) GN=trpA PE=3 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 7.777e-46
Identity = 92/233 (39.48%), Postives = 133/233 (57.08%), Query Frame = 3
Query:    9 GKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESTTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPE 707
            GK A IPY+  GD  L    E ++ LD  G+ I+E+G+P+SDP+ADGP IQ A  R+L  G     I   L E   ++  P  L TY NP+L  G + F+    + G+ G++VPD+P EE + +     +  I L+   T T+P +R+K I   SEGFVY V+  GVTG R +    + + L ++K  T  PV  GFGIS  EHV+++     DGV+VGS +++LL   +  E
Sbjct:   13 GKKAFIPYVMGGDGGLEILKERIRFLDEAGASIVEIGIPFSDPVADGPTIQRAGKRALDSGVTVKGIFQALIEARKEVQIPFVLMTYLNPVLAFGKERFIENCMEAGVDGIIVPDLPYEEQDIIAPLLREANIALIPLVTVTSPIERIKKITSESEGFVYAVTVAGVTGVRQNFKDEIHSYLEKVKSHTHLPVVAGFGISTKEHVEEMVTI-CDGVVVGSKVIELLENEKREE 244          
BLAST of FC877280 vs. ExPASy Swiss-Prot
Match: TRPA_AZOVD (Tryptophan synthase alpha chain OS=Azotobacter vinelandii (strain DJ / ATCC BAA-1303) GN=trpA PE=3 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 7.777e-46
Identity = 97/239 (40.59%), Postives = 143/239 (59.83%), Query Frame = 3
Query:   12 KVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVP-QISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESTTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKEL 725
            + AL+ ++TAGDPD  T+   LK L   G+D+IELG+P++DP+ADGP IQ A  R+L  G N    L M++       + P+ L  Y+NPI   GV+ F++  R+ G+ GL+V D+P E  E L   A    ++ +  TTPTT   R+  ++  S GFVY VS  GVTGA A+   HV+  +  ++  T  P+ +GFGI  PEH   VA   A+GV+VGSA+V  + +A S E+ + ++
Sbjct:   16 RAALVTFVTAGDPDYETSLAILKGLPEAGADVIELGMPFTDPMADGPAIQLANIRALGAGQNLVKTLRMVRAFREGDRTTPLVLMGYFNPIHYYGVERFIAEAREAGVDGLIVVDLPPEHNEDLCDPAQAAGLDFIRLTTPTTDDKRLPRVLAGSSGFVYYVSVAGVTGAHAASLEHVEQAVARLRRHTDLPLCIGFGIRSPEHAGSVARL-AEGVVVGSALVDRIAKAGSKEQAVGDV 253          
BLAST of FC877280 vs. ExPASy Swiss-Prot
Match: TRPA_SYNFM (Tryptophan synthase alpha chain OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=trpA PE=3 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 1.016e-45
Identity = 99/252 (39.29%), Postives = 148/252 (58.73%), Query Frame = 3
Query:    6 RGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESTTK-PVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAXSLKSAL 758
            R + AL+ ++TAGDPD   + E ++ +   G DI+ELG+P+SDP ADGPVIQ ++TR+L  G N +    M++E+      PI  F+YYNPIL  G   F     D G  G+++ D+P EE++ L ++     + L+    PTTP DRM AI +++ GF+YLVS  GVTG        +  L  E++      PV VGFGIS PEH + V+   ADGV+VG+A  +++   Q+      ++ +   +LK+AL
Sbjct:   14 RNEKALVGFVTAGDPDPGRSLEIIRTMCRSGVDILELGIPFSDPTADGPVIQRSSTRALKAGMNLSKAFEMIRELRGTCDVPIVAFSYYNPILAYGGAKFYRDALDSGADGVLIVDLPPEESDELTRQWPDRDLALIRLVAPTTPPDRMSAIAQSASGFIYLVSMTGVTGGGEPDLTELSFLTSELRSRCDGIPVCVGFGISLPEHARAVSPL-ADGVVVGTAFERIIEAHQNDSAVASKVGEAVGALKAAL 264          
BLAST of FC877280 vs. ExPASy Swiss-Prot
Match: TRPA_RHOPT (Tryptophan synthase alpha chain OS=Rhodopseudomonas palustris (strain TIE-1) GN=trpA PE=3 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 1.016e-45
Identity = 93/228 (40.79%), Postives = 141/228 (61.84%), Query Frame = 3
Query:    6 RGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEV-VPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESTTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLL 686
            +G+ AL+ ++ AGDPDL T+ + LK L + G+D+IE+G+P++DP+ADGP IQAA  R+L  GT     L ++++      + P+ L  YYNPI   GVD F++  +  G+ GL++ D+P EE E L   AMK  +  +   TPTT   R+ A++  + GFVY VS  G+TG+ ++ +  V   ++ IK  T  PV VGFGI  P+  Q +A   A+G +VGSA++  L
Sbjct:   15 QGRPALVTFVMAGDPDLDTSLQILKALPAAGADVIEIGMPFTDPMADGPAIQAAGLRALKAGTTLKKTLGLVRDFRATDNATPLVLMGYYNPIYIYGVDAFLADAKAAGVDGLIIVDLPPEEDEELCLPAMKAGLNFIRLATPTTDEKRLPAVLANTSGFVYYVSITGITGSASADASAVGAAVQRIKRHTNLPVCVGFGIRTPDAAQAIAA-QANGAVVGSALIDAL 241          
BLAST of FC877280 vs. ExPASy Swiss-Prot
Match: TRPA_PSEPU (Tryptophan synthase alpha chain OS=Pseudomonas putida GN=trpA PE=3 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 1.016e-45
Identity = 96/247 (38.87%), Postives = 146/247 (59.11%), Query Frame = 3
Query:    9 GKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEV-VPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESTTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAXSL 746
            G+ AL+ ++TAGDP    + + LK L + G+D+IELG+P++DP+ADG  IQ A  R+L  G      L M++E  V   + PI L  YYNPI + GV+ F++  +  G+ GL++ D+P E    L   A    I+ +  TTPTT   R+  ++E S GFVY VS  GVTGA ++ + HV   +  ++  T  P++VGFGI  PE    +A   ADGV+VGSA+V  + +A S ++ + ++     +L
Sbjct:   15 GRSALVTFVTAGDPGYDASLQILKGLPAAGADVIELGMPFTDPMADGVAIQLATLRALEAGQTLAKTLQMVREFRVDNHTTPIVLMGYYNPIHRFGVEKFVAEAKQAGVDGLIIVDLPPEHDAELATPAQAAGIDFIRLTTPTTDDARLPRVLERSSGFVYYVSVAGVTGAGSATTEHVTEAIARLRRHTDLPISVGFGIRTPEQAANIARL-ADGVVVGSALVDKIAQATSADQAVNDVLSLCSAL 260          
BLAST of FC877280 vs. ExPASy Swiss-Prot
Match: TRPA_BACC7 (Tryptophan synthase alpha chain OS=Bacillus cereus (strain AH187) GN=trpA PE=3 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 1.016e-45
Identity = 92/233 (39.48%), Postives = 134/233 (57.51%), Query Frame = 3
Query:    9 GKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESTTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPE 707
            GK A IPY+  GD  L    E ++ LD  G+ I+E+G+P+SDP+ADGP IQ A  R+L  G     I   L EV  ++  P  L TY NP+L  G ++F+    + G+ G++VPD+P EE + +        I L+   T T+P +R++ I   SEGFVY V+  GVTG R +    + + L ++K  T  PV  GFGIS  EHV+++     DGV+VGS +++LL   +  E
Sbjct:   13 GKKAFIPYVMGGDGGLEKLKERIRFLDEAGASIVEIGIPFSDPVADGPTIQRAGKRALDGGVTLKGIFQALAEVRKEVQIPFVLMTYLNPVLAFGKEHFIERCLEAGVDGIIVPDLPYEEQDIIAPLLRTANIALIPLVTVTSPIERIEKITSESEGFVYAVTVAGVTGVRQNFKEEIHSYLEKVKSHTNLPVVAGFGISTKEHVEEMITI-CDGVVVGSKIIELLENEKREE 244          
BLAST of FC877280 vs. ExPASy Swiss-Prot
Match: TRPA_BACP2 (Tryptophan synthase alpha chain OS=Bacillus pumilus (strain SAFR-032) GN=trpA PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.327e-45
Identity = 102/252 (40.48%), Postives = 150/252 (59.52%), Query Frame = 3
Query:    6 RGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ-ISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESTTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGE-------AQSPEEGLKELEKFA 737
            +G+   IP++TAGDP    T +    L + G+  IELGVPYSDPLADGPVIQ A+ R+L  G N    + +  ++    +  P+ LFTYYNP+L+   + F + +R   I GL+ PD+P EE+  LQK      I  +    PT+  +R+  IVE +EGFVY VSS+GVTG R +    +   ++++K+ +  PVAVGFGIS  E V  +    +DGV+VGSA+VK + E       + + ++ L+E E +A
Sbjct:    8 QGEKLFIPFMTAGDPSEEITIDLALSLQAAGAHAIELGVPYSDPLADGPVIQRASKRALNHGMNIVKAIELAGKMKKNGVKIPVILFTYYNPVLQLDTEYFFALLRKNHISGLLTPDLPFEESSELQKNCQSYDISYISLVAPTS-KERLVNIVEQAEGFVYCVSSLGVTGVRQTFDESITDFIQQVKQLSHIPVAVGFGISTREQVDSMNKL-SDGVVVGSALVKKIEELHDQLLASDTRQDALREFETYA 257          
BLAST of FC877280 vs. ExPASy Swiss-Prot
Match: TRPA_BACLD (Tryptophan synthase alpha chain OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=trpA PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.327e-45
Identity = 103/252 (40.87%), Postives = 152/252 (60.32%), Query Frame = 3
Query:   24 IPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ-ISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESTTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGE-------AQSPEEGLKELEKFAXSLKSA 755
            +P+ITAGDP    + E  K L   G+  +ELGVPYSDPLADGPVIQ A+ R+L    N    + +  E+    +  PI LFTYYNP+L+   D+F + +R   + GL+VPD+P EE+  LQ++  K+ I  +    PT+ + R++ I + +EGFVY VSS+GVTG R      V + +R +K  ++ PVAVGFGIS  + V+ +    ADGV+VGSA+V+ + E        ++ E+ LK  E +A +   +
Sbjct:   14 VPFITAGDPLPEISIELAKSLQEAGASALELGVPYSDPLADGPVIQRASKRALDNDMNIVKAIRLGGEMKKNGVHIPIILFTYYNPVLQLDTDHFFALLRQNQLDGLLVPDLPFEESVYLQQQCKKHGITYISLVAPTSES-RIQKITQQAEGFVYCVSSLGVTGVRNEFEDSVSSFIRSVKGMSSVPVAVGFGISSSKQVEMMNEL-ADGVVVGSALVRKIEELKDELVAPETREQALKAFEAYAKTFSGS 263          
BLAST of FC877280 vs. ExPASy Swiss-Prot
Match: TRPA_PSEU5 (Tryptophan synthase alpha chain OS=Pseudomonas stutzeri (strain A1501) GN=trpA PE=3 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.733e-45
Identity = 101/244 (41.39%), Postives = 146/244 (59.84%), Query Frame = 3
Query:    6 RGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEV-VPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESTTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQS---PEEGLKEL 725
            + + AL+ +ITAGDPD +T+ + LK L + G+D+IELG+P++DP+ADGP IQ A  R+LA   +    L M++E      + PI L  Y+NPI K GV+ F++   + G+ GL+V D+P E  E L   A    I+ +  TTPTT   R+  ++  S GFVY VS  GVTGA ++   HV+  +  +K  T  PV VGFGI  PE    +A    +GV+VGSA++  +  A+S     EG+ EL
Sbjct:   14 QNRAALVTFITAGDPDYATSLQILKGLPAAGADVIELGMPFTDPMADGPAIQLANIRALAAKQDLAKTLQMVREFRQDDQTTPIVLMGYFNPIHKMGVERFIAEAVEAGVDGLIVVDLPPEHNEDLCDPAQAAGIDFIRLTTPTTDDKRLPVVLNGSSGFVYYVSVAGVTGAGSATLEHVEEAVARLKRHTELPVCVGFGIRTPEQAAAIARL-TEGVVVGSALIDQIANAKSNAQAVEGVLEL 256          
The following BLAST results are available for this feature:
BLAST of FC877280 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TRPA_PSEE45.955e-4639.27Tryptophan synthase alpha chain OS=Pseudomonas ent... [more]
TRPA_BACCZ7.777e-4639.48Tryptophan synthase alpha chain OS=Bacillus cereus... [more]
TRPA_AZOVD7.777e-4640.59Tryptophan synthase alpha chain OS=Azotobacter vin... [more]
TRPA_SYNFM1.016e-4539.29Tryptophan synthase alpha chain OS=Syntrophobacter... [more]
TRPA_RHOPT1.016e-4540.79Tryptophan synthase alpha chain OS=Rhodopseudomona... [more]
TRPA_PSEPU1.016e-4538.87Tryptophan synthase alpha chain OS=Pseudomonas put... [more]
TRPA_BACC71.016e-4539.48Tryptophan synthase alpha chain OS=Bacillus cereus... [more]
TRPA_BACP21.327e-4540.48Tryptophan synthase alpha chain OS=Bacillus pumilu... [more]
TRPA_BACLD1.327e-4540.87Tryptophan synthase alpha chain OS=Bacillus lichen... [more]
TRPA_PSEU51.733e-4541.39Tryptophan synthase alpha chain OS=Pseudomonas stu... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN2BG06RM1 EHR Citrus clementina cDNA clone KN0AAN2BG06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877280 ID=FC877280; Name=FC877280; organism=Citrus clementina; type=EST; length=804bp
GCACGAGGGGCAAAGTGGCCCTTATTCCATACATCACTGCTGGTGATCCT
GACCTTTCAACCACCGCAGAAGCGTTGAAGTTGCTTGACTCTTGTGGATC
AGACATAATTGAACTGGGTGTTCCATATTCTGATCCTTTAGCAGATGGTC
CAGTCATCCAGGCTGCGGCTACACGATCTTTAGCAAGAGGAACCAACTTC
AATGCAATTCTTTCTATGTTGAAGGAGGTGGTTCCTCAAATATCTTGTCC
AATTGCTTTATTTACATATTACAACCCAATTCTGAAGCGAGGAGTTGATA
ATTTCATGTCCACAGTAAGAGACATTGGCATACGTGGGCTTGTGGTTCCA
GATGTCCCTCTGGAGGAGACTGAATCTTTACAGAAGGAAGCCATGAAAAA
TAAGATTGAGCTGGTACTTTTTACAACTCCCACCACTCCAACAGATCGAA
TGAAAGCCATTGTTGAAGCATCAGAGGGATTTGTCTATCTTGTAAGCTCA
ATTGGAGTTACTGGAGCTCGCGCTTCTATTAGTGGCCATGTTCAAACTCT
TTTAAGGGAAATTAAAGAGTCAACAACTAAGCCCGTTGCAGTTGGCTTTG
GCATATCAAAACCTGAGCATGTGCAACAAGTAGCAGGATGGGGAGCTGAT
GGTGTGATTGTTGGGAGTGCTATGGTGAAGCTATTGGGTGAAGCACAATC
TCCTGAGGAGGGACTGAAGGAGCTAGAAAAATTCGCANAATCGTTAAAAT
CTGCTCTCCCGTGAGAACAGTAATGTAGATCAGCAATAATGTTTGATCAA
GTGT
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