FC877280
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC877280 vs. ExPASy Swiss-Prot
Match: TRPA_PSEE4 (Tryptophan synthase alpha chain OS=Pseudomonas entomophila (strain L48) GN=trpA PE=3 SV=1) HSP 1 Score: 184.496 bits (467), Expect = 5.955e-46 Identity = 97/247 (39.27%), Postives = 147/247 (59.51%), Query Frame = 3 Query: 9 GKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEV-VPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESTTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAXSL 746 G+ AL+ ++TAGDP + E LK L + G+D+IELG+P++DP+ADG IQ A R+L G L M++E V + PI L YYNPI + GV+ F++ ++ G+ GL++ D+P E L A I+ + TTPTT R+ ++E S GFVY VS GVTGA ++ + HV + ++ T P++VGFGI PE +A ADGV+VGSA+V + +A+ + +K++ +L Sbjct: 15 GRSALVTFVTAGDPGYDASLEILKGLPAAGADVIELGMPFTDPMADGVAIQLATLRALEAGQTLAKTLQMVREFRVGNQTTPIVLMGYYNPIHRFGVEQFVAEAKEAGVDGLIIVDLPPEHDAELATPAQAAGIDFIRLTTPTTDDARLPRVLERSSGFVYYVSVAGVTGAGSATTEHVTEAIARLRRHTDLPISVGFGIRTPEQAAAIARL-ADGVVVGSALVDKIAQAKDAGQAVKDVLSLCSAL 260
BLAST of FC877280 vs. ExPASy Swiss-Prot
Match: TRPA_BACCZ (Tryptophan synthase alpha chain OS=Bacillus cereus (strain ZK / E33L) GN=trpA PE=3 SV=1) HSP 1 Score: 184.111 bits (466), Expect = 7.777e-46 Identity = 92/233 (39.48%), Postives = 133/233 (57.08%), Query Frame = 3 Query: 9 GKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESTTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPE 707 GK A IPY+ GD L E ++ LD G+ I+E+G+P+SDP+ADGP IQ A R+L G I L E ++ P L TY NP+L G + F+ + G+ G++VPD+P EE + + + I L+ T T+P +R+K I SEGFVY V+ GVTG R + + + L ++K T PV GFGIS EHV+++ DGV+VGS +++LL + E Sbjct: 13 GKKAFIPYVMGGDGGLEILKERIRFLDEAGASIVEIGIPFSDPVADGPTIQRAGKRALDSGVTVKGIFQALIEARKEVQIPFVLMTYLNPVLAFGKERFIENCMEAGVDGIIVPDLPYEEQDIIAPLLREANIALIPLVTVTSPIERIKKITSESEGFVYAVTVAGVTGVRQNFKDEIHSYLEKVKSHTHLPVVAGFGISTKEHVEEMVTI-CDGVVVGSKVIELLENEKREE 244
BLAST of FC877280 vs. ExPASy Swiss-Prot
Match: TRPA_AZOVD (Tryptophan synthase alpha chain OS=Azotobacter vinelandii (strain DJ / ATCC BAA-1303) GN=trpA PE=3 SV=1) HSP 1 Score: 184.111 bits (466), Expect = 7.777e-46 Identity = 97/239 (40.59%), Postives = 143/239 (59.83%), Query Frame = 3 Query: 12 KVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVP-QISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESTTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKEL 725 + AL+ ++TAGDPD T+ LK L G+D+IELG+P++DP+ADGP IQ A R+L G N L M++ + P+ L Y+NPI GV+ F++ R+ G+ GL+V D+P E E L A ++ + TTPTT R+ ++ S GFVY VS GVTGA A+ HV+ + ++ T P+ +GFGI PEH VA A+GV+VGSA+V + +A S E+ + ++ Sbjct: 16 RAALVTFVTAGDPDYETSLAILKGLPEAGADVIELGMPFTDPMADGPAIQLANIRALGAGQNLVKTLRMVRAFREGDRTTPLVLMGYFNPIHYYGVERFIAEAREAGVDGLIVVDLPPEHNEDLCDPAQAAGLDFIRLTTPTTDDKRLPRVLAGSSGFVYYVSVAGVTGAHAASLEHVEQAVARLRRHTDLPLCIGFGIRSPEHAGSVARL-AEGVVVGSALVDRIAKAGSKEQAVGDV 253
BLAST of FC877280 vs. ExPASy Swiss-Prot
Match: TRPA_SYNFM (Tryptophan synthase alpha chain OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=trpA PE=3 SV=1) HSP 1 Score: 183.726 bits (465), Expect = 1.016e-45 Identity = 99/252 (39.29%), Postives = 148/252 (58.73%), Query Frame = 3 Query: 6 RGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESTTK-PVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAXSLKSAL 758 R + AL+ ++TAGDPD + E ++ + G DI+ELG+P+SDP ADGPVIQ ++TR+L G N + M++E+ PI F+YYNPIL G F D G G+++ D+P EE++ L ++ + L+ PTTP DRM AI +++ GF+YLVS GVTG + L E++ PV VGFGIS PEH + V+ ADGV+VG+A +++ Q+ ++ + +LK+AL Sbjct: 14 RNEKALVGFVTAGDPDPGRSLEIIRTMCRSGVDILELGIPFSDPTADGPVIQRSSTRALKAGMNLSKAFEMIRELRGTCDVPIVAFSYYNPILAYGGAKFYRDALDSGADGVLIVDLPPEESDELTRQWPDRDLALIRLVAPTTPPDRMSAIAQSASGFIYLVSMTGVTGGGEPDLTELSFLTSELRSRCDGIPVCVGFGISLPEHARAVSPL-ADGVVVGTAFERIIEAHQNDSAVASKVGEAVGALKAAL 264
BLAST of FC877280 vs. ExPASy Swiss-Prot
Match: TRPA_RHOPT (Tryptophan synthase alpha chain OS=Rhodopseudomonas palustris (strain TIE-1) GN=trpA PE=3 SV=1) HSP 1 Score: 183.726 bits (465), Expect = 1.016e-45 Identity = 93/228 (40.79%), Postives = 141/228 (61.84%), Query Frame = 3 Query: 6 RGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEV-VPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESTTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLL 686 +G+ AL+ ++ AGDPDL T+ + LK L + G+D+IE+G+P++DP+ADGP IQAA R+L GT L ++++ + P+ L YYNPI GVD F++ + G+ GL++ D+P EE E L AMK + + TPTT R+ A++ + GFVY VS G+TG+ ++ + V ++ IK T PV VGFGI P+ Q +A A+G +VGSA++ L Sbjct: 15 QGRPALVTFVMAGDPDLDTSLQILKALPAAGADVIEIGMPFTDPMADGPAIQAAGLRALKAGTTLKKTLGLVRDFRATDNATPLVLMGYYNPIYIYGVDAFLADAKAAGVDGLIIVDLPPEEDEELCLPAMKAGLNFIRLATPTTDEKRLPAVLANTSGFVYYVSITGITGSASADASAVGAAVQRIKRHTNLPVCVGFGIRTPDAAQAIAA-QANGAVVGSALIDAL 241
BLAST of FC877280 vs. ExPASy Swiss-Prot
Match: TRPA_PSEPU (Tryptophan synthase alpha chain OS=Pseudomonas putida GN=trpA PE=3 SV=1) HSP 1 Score: 183.726 bits (465), Expect = 1.016e-45 Identity = 96/247 (38.87%), Postives = 146/247 (59.11%), Query Frame = 3 Query: 9 GKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEV-VPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESTTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAXSL 746 G+ AL+ ++TAGDP + + LK L + G+D+IELG+P++DP+ADG IQ A R+L G L M++E V + PI L YYNPI + GV+ F++ + G+ GL++ D+P E L A I+ + TTPTT R+ ++E S GFVY VS GVTGA ++ + HV + ++ T P++VGFGI PE +A ADGV+VGSA+V + +A S ++ + ++ +L Sbjct: 15 GRSALVTFVTAGDPGYDASLQILKGLPAAGADVIELGMPFTDPMADGVAIQLATLRALEAGQTLAKTLQMVREFRVDNHTTPIVLMGYYNPIHRFGVEKFVAEAKQAGVDGLIIVDLPPEHDAELATPAQAAGIDFIRLTTPTTDDARLPRVLERSSGFVYYVSVAGVTGAGSATTEHVTEAIARLRRHTDLPISVGFGIRTPEQAANIARL-ADGVVVGSALVDKIAQATSADQAVNDVLSLCSAL 260
BLAST of FC877280 vs. ExPASy Swiss-Prot
Match: TRPA_BACC7 (Tryptophan synthase alpha chain OS=Bacillus cereus (strain AH187) GN=trpA PE=3 SV=1) HSP 1 Score: 183.726 bits (465), Expect = 1.016e-45 Identity = 92/233 (39.48%), Postives = 134/233 (57.51%), Query Frame = 3 Query: 9 GKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESTTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPE 707 GK A IPY+ GD L E ++ LD G+ I+E+G+P+SDP+ADGP IQ A R+L G I L EV ++ P L TY NP+L G ++F+ + G+ G++VPD+P EE + + I L+ T T+P +R++ I SEGFVY V+ GVTG R + + + L ++K T PV GFGIS EHV+++ DGV+VGS +++LL + E Sbjct: 13 GKKAFIPYVMGGDGGLEKLKERIRFLDEAGASIVEIGIPFSDPVADGPTIQRAGKRALDGGVTLKGIFQALAEVRKEVQIPFVLMTYLNPVLAFGKEHFIERCLEAGVDGIIVPDLPYEEQDIIAPLLRTANIALIPLVTVTSPIERIEKITSESEGFVYAVTVAGVTGVRQNFKEEIHSYLEKVKSHTNLPVVAGFGISTKEHVEEMITI-CDGVVVGSKIIELLENEKREE 244
BLAST of FC877280 vs. ExPASy Swiss-Prot
Match: TRPA_BACP2 (Tryptophan synthase alpha chain OS=Bacillus pumilus (strain SAFR-032) GN=trpA PE=3 SV=1) HSP 1 Score: 183.341 bits (464), Expect = 1.327e-45 Identity = 102/252 (40.48%), Postives = 150/252 (59.52%), Query Frame = 3 Query: 6 RGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ-ISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESTTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGE-------AQSPEEGLKELEKFA 737 +G+ IP++TAGDP T + L + G+ IELGVPYSDPLADGPVIQ A+ R+L G N + + ++ + P+ LFTYYNP+L+ + F + +R I GL+ PD+P EE+ LQK I + PT+ +R+ IVE +EGFVY VSS+GVTG R + + ++++K+ + PVAVGFGIS E V + +DGV+VGSA+VK + E + + ++ L+E E +A Sbjct: 8 QGEKLFIPFMTAGDPSEEITIDLALSLQAAGAHAIELGVPYSDPLADGPVIQRASKRALNHGMNIVKAIELAGKMKKNGVKIPVILFTYYNPVLQLDTEYFFALLRKNHISGLLTPDLPFEESSELQKNCQSYDISYISLVAPTS-KERLVNIVEQAEGFVYCVSSLGVTGVRQTFDESITDFIQQVKQLSHIPVAVGFGISTREQVDSMNKL-SDGVVVGSALVKKIEELHDQLLASDTRQDALREFETYA 257
BLAST of FC877280 vs. ExPASy Swiss-Prot
Match: TRPA_BACLD (Tryptophan synthase alpha chain OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=trpA PE=3 SV=1) HSP 1 Score: 183.341 bits (464), Expect = 1.327e-45 Identity = 103/252 (40.87%), Postives = 152/252 (60.32%), Query Frame = 3 Query: 24 IPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ-ISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESTTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGE-------AQSPEEGLKELEKFAXSLKSA 755 +P+ITAGDP + E K L G+ +ELGVPYSDPLADGPVIQ A+ R+L N + + E+ + PI LFTYYNP+L+ D+F + +R + GL+VPD+P EE+ LQ++ K+ I + PT+ + R++ I + +EGFVY VSS+GVTG R V + +R +K ++ PVAVGFGIS + V+ + ADGV+VGSA+V+ + E ++ E+ LK E +A + + Sbjct: 14 VPFITAGDPLPEISIELAKSLQEAGASALELGVPYSDPLADGPVIQRASKRALDNDMNIVKAIRLGGEMKKNGVHIPIILFTYYNPVLQLDTDHFFALLRQNQLDGLLVPDLPFEESVYLQQQCKKHGITYISLVAPTSES-RIQKITQQAEGFVYCVSSLGVTGVRNEFEDSVSSFIRSVKGMSSVPVAVGFGISSSKQVEMMNEL-ADGVVVGSALVRKIEELKDELVAPETREQALKAFEAYAKTFSGS 263
BLAST of FC877280 vs. ExPASy Swiss-Prot
Match: TRPA_PSEU5 (Tryptophan synthase alpha chain OS=Pseudomonas stutzeri (strain A1501) GN=trpA PE=3 SV=1) HSP 1 Score: 182.956 bits (463), Expect = 1.733e-45 Identity = 101/244 (41.39%), Postives = 146/244 (59.84%), Query Frame = 3 Query: 6 RGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEV-VPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESTTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQS---PEEGLKEL 725 + + AL+ +ITAGDPD +T+ + LK L + G+D+IELG+P++DP+ADGP IQ A R+LA + L M++E + PI L Y+NPI K GV+ F++ + G+ GL+V D+P E E L A I+ + TTPTT R+ ++ S GFVY VS GVTGA ++ HV+ + +K T PV VGFGI PE +A +GV+VGSA++ + A+S EG+ EL Sbjct: 14 QNRAALVTFITAGDPDYATSLQILKGLPAAGADVIELGMPFTDPMADGPAIQLANIRALAAKQDLAKTLQMVREFRQDDQTTPIVLMGYFNPIHKMGVERFIAEAVEAGVDGLIVVDLPPEHNEDLCDPAQAAGIDFIRLTTPTTDDKRLPVVLNGSSGFVYYVSVAGVTGAGSATLEHVEEAVARLKRHTELPVCVGFGIRTPEQAAAIARL-TEGVVVGSALIDQIANAKSNAQAVEGVLEL 256 The following BLAST results are available for this feature:
BLAST of FC877280 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC877280 ID=FC877280; Name=FC877280; organism=Citrus clementina; type=EST; length=804bpback to top |