FC877283

Overview
NameFC877283
Unique NameFC877283
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length683
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC877283 vs. ExPASy Swiss-Prot
Match: PABP_SCHPO (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Schizosaccharomyces pombe GN=pab1 PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.238e-11
Identity = 53/137 (38.69%), Postives = 68/137 (49.64%), Query Frame = 1
Query:  127 PIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGGMLPVPVDMGAGIPRRDASVGQP-MPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQ 534
            P MP Q P  G A  YP G N +      G   M+P  V   AG    +A    P MP    +  LA    E ++ +LGE LYP V   E   + K+TGMLLEM  +E+L LLE   AL  +V EA+ VL+    Q+
Sbjct:  514 PGMPTQFPAGGPAPGYP-GMNARGPVPAQGRPMMMPGSVP-SAGPAEAEAVPAVPGMPERFTAADLAAVPEESRKQVLGELLYPKVFVREEKLSGKITGMLLEMPNSELLELLEDDSALNERVNEAIGVLQEFVDQE 648          
BLAST of FC877283 vs. ExPASy Swiss-Prot
Match: PABP_NEUCR (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Neurospora crassa GN=pab-1 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.704e-11
Identity = 47/139 (33.81%), Postives = 68/139 (48.92%), Query Frame = 1
Query:  151 PRGHAYRYPLGRNMQDFPFDMGAGGMLPVPVDMGAGIPRRDASVGQPMPITALSTALANAS-PEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAM----EVLRSVAQQQANNPAD 552
            PRG+A     GR     P   GA      P D+ AG              + L   LA    P+ Q+ ++GE+L+P ++ ++   A K+TGMLLEMD  E+++L E   AL  KV EA+    E L++  QQ    PA+
Sbjct:  631 PRGNANFMAAGRGASPIP---GA------PADLSAG--------------SFLQAQLATTQDPQAQKQIIGENLFPKIQAIQPALAGKITGMLLEMDNAELINLFEDDNALNVKVQEALAVYDEYLKTQGQQPTQQPAE 746          
The following BLAST results are available for this feature:
BLAST of FC877283 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
PABP_SCHPO1.238e-1138.69Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_NEUCR4.704e-1133.81Polyadenylate-binding protein, cytoplasmic and nuc... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN2BG09RM1 EHR Citrus clementina cDNA clone KN0AAN2BG09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877283 ID=FC877283; Name=FC877283; organism=Citrus clementina; type=EST; length=683bp
GCACGAGGGCCTGCTGGGGCACCGATGCCGAACTTCTTTGTTCCAGTGGT
CTCGCAAGGTCAGCAGGGCCAGCGTCCTGGTGGACGACGTGGTGCTGGAC
CTGTGCAACAGACCCAGCAGCCACTCCCCATTATGCCGCACCAGATGCCT
CCCAGGGGTCATGCCTATCGGTACCCACTTGGCCGTAATATGCAAGATTT
CCCCTTTGACATGGGTGCTGGCGGTATGCTCCCTGTTCCCGTTGACATGG
GCGCTGGCATACCTCGGCGAGATGCATCTGTTGGACAACCTATGCCGATA
ACGGCTTTGTCTACTGCTCTTGCAAATGCATCACCAGAACAGCAAAGGAC
GCTGCTGGGTGAAAGTTTATATCCTCTAGTGGAGCAGCTGGAGCGAGATG
CAGCGGCTAAGGTAACGGGAATGCTCTTGGAGATGGACCAGACAGAGGTT
TTGCATCTTCTTGAGTCACCAGAGGCTTTGAAGGCGAAAGTAGCTGAGGC
AATGGAGGTTTTGAGGAGTGTTGCTCAGCAGCAGGCTAATAATCCAGCAG
ATCAACTGGCTTCATTGTCCCTGAATGAAAACCTTGTTTCTTGAGCGCGT
TGCTGTCATTGAAAAAGTTTGGATTAGTTGTGGTTTCAAACAATTAAAGT
CTTTGTTTTTGGCATGGATGGTGTAGGTGTTTG
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