FC877780

Overview
NameFC877780
Unique NameFC877780
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length828
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC877780_ssr65 microsatellite FC877780_ssr65:65..76. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig4349 contig Ccv1_Contig4349:26..853. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877780 vs. ExPASy Swiss-Prot
Match: AMHX_BACSU (Amidohydrolase amhX OS=Bacillus subtilis GN=amhX PE=3 SV=3)

HSP 1 Score: 108.227 bits (269), Expect = 5.709e-23
Identity = 54/141 (38.30%), Postives = 88/141 (62.41%), Query Frame = 2
Query:  332 IHQNPELAFQEFETSRLLRAELDRMEIGYKYPLAKTGIRAWVGTGGPPFVALRADMDALPIQEAVEWEYKSKVAGKMHACGHDAHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAGNGAKRMMADGALEDVEAIFAVHV 754
            +H NPE++++E+ET+  L+ +L+ +    +     TG+   +G+G P  VA+RAD+DAL       W+  +      H+CGHD+H+ M +G   +LK +  L KGT+  IFQPAEE G GA +M+ +G L+D++ ++ VHV
Sbjct:   19 LHANPEVSWKEYETTSFLKQKLEDLGCRTRTFSDCTGVVGEIGSGSP-VVAVRADIDAL-------WQEVNGTFRANHSCGHDSHMTMALGTLMLLKKQPELPKGTIRFIFQPAEEKGGGALKMIEEGVLDDIDYLYGVHV 151          
BLAST of FC877780 vs. ExPASy Swiss-Prot
Match: DAPL_GEOTN (Putative N-acetyldiaminopimelate deacetylase OS=Geobacillus thermodenitrificans (strain NG80-2) GN=dapL PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 7.456e-23
Identity = 61/181 (33.70%), Postives = 97/181 (53.59%), Query Frame = 2
Query:  296 ETVDWLRSVRRTIHQNPELAFQEFETSRLLRAELDRMEIGYKYPLAKTGIRAWV--------GTGGPPFVALRADMDALPIQEAVEWEYKSKVAGKMHACGHDAHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAGNGAKRMMADGALED--VEAIFAVHVSHEHPTGVIGSRPGPLLA 808
            ET+    ++RR +H+ PEL FQEF+T + L   +  +      P  +  +R W         GT     +  RAD+D LPI E     Y+S+ AG+MHACGHD H+++ +G   +     + ++  ++ IFQPAEE   GAK M+    + +   + I A+H++ E+P G I ++ G L A
Sbjct:    2 ETISPFVAIRRDLHKIPELGFQEFKTQQYLLNYIQSL------PQERLDVRTWKTGIFVKVSGTAPRKTIGYRADIDGLPISEETGLPYRSEHAGQMHACGHDVHMSIALGV--LTHFAHNPIRDDLLFIFQPAEEGPGGAKPMLESDIMREWKPDMIVALHIAPEYPVGTIATKEGLLFA 174          
BLAST of FC877780 vs. ExPASy Swiss-Prot
Match: DAPL_GEOSW (Putative N-acetyldiaminopimelate deacetylase OS=Geobacillus sp. (strain WCH70) GN=dapL PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.169e-22
Identity = 64/172 (37.21%), Postives = 96/172 (55.81%), Query Frame = 2
Query:  317 SVRRTIHQNPELAFQEFETSRLLRAEL-----DRMEIGYKYPLAKTGIRAWV-GTGGPPFVALRADMDALPIQEAVEWEYKSKVAGKMHACGHDAHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAGNGAKRMMADGALE--DVEAIFAVHVSHEHPTGVIGSRPGPLLA 808
            ++RR +H+ PEL FQEF+T + L   +     +R+EI       KTGI   V GT     +  R D+D LPI+E     Y S+  G MHACGHD H+++ +G   +    EH ++  ++ IFQPAEE   GAK M+    ++    + I A+H++ E+P G I ++ G L A
Sbjct:    9 AIRRDLHKIPELGFQEFKTQQYLLRYIHALPQERLEI----QTWKTGIFVKVKGTAPRKMIGYRTDIDGLPIKEETGLPYSSEHEGNMHACGHDVHMSIALGL--LTHFAEHPIQDDLLFIFQPAEEGPGGAKPMLESEIMKVWKPDMILALHIAPEYPVGTIATKEGLLFA 174          
BLAST of FC877780 vs. ExPASy Swiss-Prot
Match: DAPL_OCEIH (Putative N-acetyldiaminopimelate deacetylase OS=Oceanobacillus iheyensis GN=dapL PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 4.833e-22
Identity = 63/170 (37.06%), Postives = 90/170 (52.94%), Query Frame = 2
Query:  311 LRSVRRTIHQNPELAFQEFETSRLLRAELDRMEI-GYKYPLAKTGIRAWVGTGGPPF-VALRADMDALPIQEAVEWEYKSKVAGKMHACGHDAHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAGNGAKRMMADGALED--VEAIFAVHVSHEHPTGVIGSRPGPLLA 808
            L  +RR +HQ PEL FQEF+T   L   ++ +     +     TGI  +V    P   +  RAD+D LPI E     Y S   G+MHACGHD H+ + +GA +  K  +  +   VI +FQPAEE   GAK M+     +    + +FA+H++ E P G + S+ G L A
Sbjct:    5 LEQIRRDLHQIPELGFQEFKTQAYLLERINEIATENVEIKKWSTGILVYVHGKSPARKIGFRADIDGLPILEQTNLPYASLHEGRMHACGHDLHMTIALGALE--KLIQDPINDDVIFVFQPAEEGPGGAKPMLESEEFQQWKPDMMFALHIAPELPVGTVSSKAGLLFA 172          
BLAST of FC877780 vs. ExPASy Swiss-Prot
Match: DAPL_BREBN (Putative N-acetyldiaminopimelate deacetylase OS=Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) GN=dapL PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 8.244e-22
Identity = 64/180 (35.56%), Postives = 92/180 (51.11%), Query Frame = 2
Query:  299 TVDWLRSVRRTIHQNPELAFQEFETSRLLRAELDRMEIGYKYPLAKTGIRAW--------VGTGGPPFVALRADMDALPIQEAVEWEYKSKVAGKMHACGHDAHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAGNGAKRMMADGALED--VEAIFAVHVSHEHPTGVIGSRPGPLLA 808
            T      +RR +HQ PE  F E +T + L   LD ++   K P  +  I+ W         GT     +A R DMD LPI E   + ++S   G MHACGHD H+A+ +G   +    EH +   ++ +FQPAEE   GA  MM      +   + IFA+H++ E+P G I ++PG L A
Sbjct:    2 TTSLFTQIRRDLHQIPEPGFAEVKTQQYL---LDYLK---KLPQERIEIKTWRTGILVKLAGTKPKRLIAWRTDMDGLPIVEETSYPFRSLHEGYMHACGHDMHMAIALGL--LTHFTEHSIADDLLFLFQPAEEGPGGAWPMMESEEFAEWRPDCIFALHIAPEYPVGQIATKPGILFA 173          
BLAST of FC877780 vs. ExPASy Swiss-Prot
Match: DAPL_ANOFW (Putative N-acetyldiaminopimelate deacetylase OS=Anoxybacillus flavithermus (strain DSM 21510 / WK1) GN=dapL PE=3 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 2.399e-21
Identity = 62/172 (36.05%), Postives = 95/172 (55.23%), Query Frame = 2
Query:  317 SVRRTIHQNPELAFQEFETSRLLRAEL-----DRMEIGYKYPLAKTGIRAWV-GTGGPPFVALRADMDALPIQEAVEWEYKSKVAGKMHACGHDAHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAGNGAKRMMADGALED--VEAIFAVHVSHEHPTGVIGSRPGPLLA 808
            ++RR +HQ PEL FQEF+T + +   L     +R++I       +TGI   V GT     +  RADMD LPI E  +  ++S   G+MHACGHD H+A+ +G   +     H ++  ++ IFQPAEE   GA  M+    ++    + I A+H++  +P G I ++ G L A
Sbjct:    4 NIRRDLHQIPELGFQEFKTQQYILDYLATLPSERLQI----KTWRTGILVRVHGTAPTKTIGYRADMDGLPIDEQTDVPFRSTHEGRMHACGHDMHMAIALGV--LTHVVHHPIRDDMLFIFQPAEEGPGGALPMLESDEMKQWMPDMILALHIAPAYPVGTIATKEGLLFA 169          
BLAST of FC877780 vs. ExPASy Swiss-Prot
Match: DAPL_STRU0 (Putative N-acetyldiaminopimelate deacetylase OS=Streptococcus uberis (strain ATCC BAA-854 / 0140J) GN=dapL PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.091e-21
Identity = 61/173 (35.26%), Postives = 95/173 (54.91%), Query Frame = 2
Query:  311 LRSVRRTIHQNPELAFQEFETSRLLRAELDRM---EIGYKYPLAKTGIRAWV-GTGGPPFVALRADMDALPIQEAVEWEYKSKVAGKMHACGHDAHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAGNGAKRMMADGALED--VEAIFAVHVSHEHPTGVIGSRPGPLLAG 811
            L ++RR +HQ PE+  +E++T   L + ++++   +   +    KTGI  ++ G      VA R+DMD LPI E     + SK  G+MHACGHD H+ M +G  + L  ++   K  ++ IFQPAEE   G   M   GAL++   + ++A+HV  + P G + S    L AG
Sbjct:    4 LIAIRRQLHQIPEIGLEEYQTQAFLLSVIEQLCQDKPFIQIKTWKTGILVFLKGYAPEKTVAWRSDMDGLPITEETGLAFASKHQGRMHACGHDIHMTMALGLLEALVEKQS--KHNMLFIFQPAEENEAGGMLMYQSGALDEWMPDEVYALHVRPDLPVGTLASNRATLFAG 174          
BLAST of FC877780 vs. ExPASy Swiss-Prot
Match: DAPL_LEUCK (Putative N-acetyldiaminopimelate deacetylase OS=Leuconostoc citreum (strain KM20) GN=dapL PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.091e-21
Identity = 64/175 (36.57%), Postives = 89/175 (50.86%), Query Frame = 2
Query:  311 LRSVRRTIHQNPELAFQEFETSRLLRAEL-----DRMEIGYKYPLAKTGIRAWVGTGGPPFVALRADMDALPIQEAVEWEYKSKVAGKMHACGHDAHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAGNGAKRMMADGALED---VEAIFAVHVSHEHPTGVIGSRPGPLLAG 811
            L++ RR +HQ PE A +EF+T   L  +L     D M I     L    +  + GT     +  R D+DALPIQEA   ++ S+  GKMHACGHD H+ M +G A+     +H  K  +I+ FQPAEEA +G K     G  E     +  + +H     P G + +  G L AG
Sbjct:    9 LQTFRRELHQIPETALEEFKTHDYLLTKLKSWQQDYMTIKTVEALPTAILVYFQGTNPVRTIGYRTDIDALPIQEATGLDFASQHPGKMHACGHDVHMTMALGLAQYFS--QHQPKDNLIIFFQPAEEAESGGKVAYDMGLFEGKWRPDEFYGIHDQPNLPAGTLSTLAGTLFAG 181          
BLAST of FC877780 vs. ExPASy Swiss-Prot
Match: DAPL_BACSK (Putative N-acetyldiaminopimelate deacetylase OS=Bacillus clausii (strain KSM-K16) GN=dapL PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.091e-21
Identity = 66/169 (39.05%), Postives = 86/169 (50.89%), Query Frame = 2
Query:  320 VRRTIHQNPELAFQEFETSRLLRAELDRME-IGYKYPLAKTGIRAWVGTGGPPFVALRADMDALPIQEAVEWEYKSKVAGKMHACGHDAHVAMLIGAAKILKSRE---HLLKGTVILIFQPAEEAGNGAKRMMADGALE--DVEAIFAVHVSHEHPTGVIGSRPGPLLA 808
            +RR  HQ PEL F EF+T +LL   +  ME    +    KT +   V       +A RADMD LPI E   + + SK  G MHACGHD H+ + +G      S E   HLL      IFQPAEE   GAK ++    L     + I+A+H+    P G I ++PG L A
Sbjct:    9 IRRAFHQIPELGFNEFKTQKLLLDTISNMEQTRLQIKTWKTAVFVRVEGRQDYTIAYRADMDGLPITEETGYSFASKHEGAMHACGHDFHMTIALGLLDHFASHEPECHLL-----FIFQPAEEGPGGAKPIIEADVLGAWQPDEIYALHIDPNLPVGSIATKPGLLFA 172          
BLAST of FC877780 vs. ExPASy Swiss-Prot
Match: DAPL_ENTFA (Putative N-acetyldiaminopimelate deacetylase OS=Enterococcus faecalis GN=dapL PE=3 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 6.979e-21
Identity = 63/170 (37.06%), Postives = 93/170 (54.71%), Query Frame = 2
Query:  311 LRSVRRTIHQNPELAFQEFETSRLLRAELDRMEIGY-KYPLAKTGIRAWV-GTGGPPFVALRADMDALPIQEAVEWEYKSKVAGKMHACGHDAHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAGNGAKRMMADGALED--VEAIFAVHVSHEHPTGVIGSRPGPLLA 808
            L ++RR +HQ PE+  +E ET   L  E+D+M+  Y +    +TGI  ++ G      +  RAD+D LPIQE V   ++SK  G MHACGHD H+ + +G  K L  ++       + +FQPAEE   G   M  D A  +   +  +A+HV+ + P G I +R G L A
Sbjct:    9 LIAIRRQLHQIPEIGLEEKETQAFLLNEIDKMKQPYLQVRTWQTGILVFIEGKNPQKTIGWRADIDGLPIQEEVVSAFQSKRPGFMHACGHDFHMTIGLGVLKELSQQQP--DNNFLFLFQPAEENEAGGMLMYEDHAFGEWLPDEFYALHVNPDLPVGTISTRVGTLFA 176          
The following BLAST results are available for this feature:
BLAST of FC877780 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 117
Match NameE-valueIdentityDescription
AMHX_BACSU5.709e-2338.30Amidohydrolase amhX OS=Bacillus subtilis GN=amhX P... [more]
DAPL_GEOTN7.456e-2333.70Putative N-acetyldiaminopimelate deacetylase OS=Ge... [more]
DAPL_GEOSW2.169e-2237.21Putative N-acetyldiaminopimelate deacetylase OS=Ge... [more]
DAPL_OCEIH4.833e-2237.06Putative N-acetyldiaminopimelate deacetylase OS=Oc... [more]
DAPL_BREBN8.244e-2235.56Putative N-acetyldiaminopimelate deacetylase OS=Br... [more]
DAPL_ANOFW2.399e-2136.05Putative N-acetyldiaminopimelate deacetylase OS=An... [more]
DAPL_STRU04.091e-2135.26Putative N-acetyldiaminopimelate deacetylase OS=St... [more]
DAPL_LEUCK4.091e-2136.57Putative N-acetyldiaminopimelate deacetylase OS=Le... [more]
DAPL_BACSK4.091e-2139.05Putative N-acetyldiaminopimelate deacetylase OS=Ba... [more]
DAPL_ENTFA6.979e-2137.06Putative N-acetyldiaminopimelate deacetylase OS=En... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA74DD12RM1 IVIA1 Citrus clementina cDNA clone IC0AAA74DD12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877780 ID=FC877780; Name=FC877780; organism=Citrus clementina; type=EST; length=828bp
TTTCTCTGCAAACATGAAGCTTCAAAAACTCTCTGTGGCGTTTAAAATCT
TGAGCTTCAATTTAATTATTATTATTCTCCTGCAAGTTGAATCCTTAACG
CCGGCGAACAACGACTACGCTTTCTTTGACATAAACTCGTTGGGCTCATC
AACAATAGCAGCAACAACGCCGGCTTGGAAACCCGACGGCGGCAGCGTCA
AGAACCGATCGTCGACGTCACGGAAGCCGTTTTCGAGCTGCGGAGTGTGG
AGCAGGGCGTGCTCGAAGGAGGTGATGGAGCTGGCGCGGCGGCCGGAGAC
GGTGGATTGGCTGAGGAGTGTGAGGAGAACGATTCATCAGAATCCGGAGC
TTGCTTTTCAAGAATTTGAAACCAGCAGGCTCTTGAGGGCCGAGTTGGAT
CGGATGGAGATTGGATACAAATACCCGTTGGCCAAAACAGGTATCCGGGC
ATGGGTCGGGACAGGCGGACCGCCGTTTGTTGCCCTCAGAGCTGACATGG
ATGCACTTCCGATTCAGGAAGCCGTCGAGTGGGAATACAAAAGCAAAGTG
GCTGGCAAAATGCATGCCTGTGGACACGATGCGCACGTTGCCATGCTCAT
CGGTGCGGCCAAGATCTTGAAGAGCCGCGAACATCTTTTAAAGGGAACTG
TAATCTTGATATTCCAGCCAGCGGAGGAAGCTGGCAATGGTGCAAAAAGG
ATGATGGCTGATGGGGCTCTAGAAGATGTCGAGGCAATATTCGCCGTTCA
CGTGTCCCACGAGCATCCTACCGGTGTCATTGGTTCCAGGCCAGGTCCTT
TGCTAGCCGGCTGTGGCTTTTTCCATGC
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