FC877782

Overview
NameFC877782
Unique NameFC877782
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length675
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3765 contig Ccv1_Contig3765:7..681. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877782 vs. ExPASy Swiss-Prot
Match: HSP15_SOYBN (17.6 kDa class I heat shock protein OS=Glycine max GN=HSP17.6-L PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 5.927e-43
Identity = 91/161 (56.52%), Postives = 103/161 (63.98%), Query Frame = 3
Query:   30 MSLIPSFFGNRRSSVSDPFSLDVWDPFRDFPFPSGYSSALSSQFPPETSAVVNARVDWKETPEAHVFKADLPGLXXXXXXXXXXXXXXLQISGQRKIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKASMESGXXXXXXXXXXXXXXXXXAIEISG 512
            MSLIPS FG  RS+V DPFSLD+WDPF+DF  P+   SA       E SA VN RVDWKET EAHV KAD+PGL              LQISG+R +EKEDKNDTWHRV+RSSG F RRFRLPEN K++Q+KA ME+G                  IEISG
Sbjct:    1 MSLIPSIFGGPRSNVFDPFSLDMWDPFKDFHVPTSSVSA-------ENSAFVNTRVDWKETQEAHVLKADIPGLKKEEVKVQIEDDRVLQISGERNVEKEDKNDTWHRVDRSSGKFMRRFRLPENAKVEQVKACMENGVLTVTIPKEEVKKSDVKPIEISG 154          
BLAST of FC877782 vs. ExPASy Swiss-Prot
Match: HS17A_ARATH (17.6 kDa class I heat shock protein 1 OS=Arabidopsis thaliana GN=HSP17.6A PE=1 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 7.741e-43
Identity = 88/141 (62.41%), Postives = 103/141 (73.05%), Query Frame = 3
Query:   30 MSLIPSFFGNRR---SSVSDPFSLDVWDPFRDFPFPSGYSSALSSQFPPETSAVVNARVDWKETPEAHVFKADLPGLXXXXXXXXXXXXXXLQISGQRKIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKASMESG 443
            MSLIPSFFGN R   +++ DPFSLDVWDPF++  FPS  SSA++           NARVDWKET EAHVFKADLPG+              L+ISG+R +EKE+K DTWHRVERSSG FSR+FRLPENVKMDQ+KASME+G
Sbjct:    1 MSLIPSFFGNNRRINNNIFDPFSLDVWDPFKELQFPSSSSSAIA-----------NARVDWKETAEAHVFKADLPGMKKEEVKVEIEDDSVLKISGERHVEKEEKQDTWHRVERSSGGFSRKFRLPENVKMDQVKASMENG 130          
BLAST of FC877782 vs. ExPASy Swiss-Prot
Match: HSP12_DAUCA (18.0 kDa class I heat shock protein OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.011e-42
Identity = 87/161 (54.04%), Postives = 107/161 (66.46%), Query Frame = 3
Query:   30 MSLIPSFFGNRRSSVSDPFSLDVWDPFRDFPFPSGYSSALSSQFPPETSAVVNARVDWKETPEAHVFKADLPGLXXXXXXXXXXXXXXLQISGQRKIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKASMESGXXXXXXXXXXXXXXXXXAIEISG 512
            MS+IPSFFG+RRS+V +PFSLD+WDPF+D+P  +  SS  SS+F  ET+A  N  +DWKETP+AHVFKADLPGL              LQISG+R  EKE+KN+ WHRVE SSG F RRFRLPEN  +D++KA ME+G                 +I ISG
Sbjct:    1 MSIIPSFFGSRRSNVLNPFSLDIWDPFQDYPLIT--SSGTSSEFGKETAAFANTHIDWKETPQAHVFKADLPGLKKEEVKVEVEEGKVLQISGERNKEKEEKNNKWHRVEFSSGKFLRRFRLPENANVDEVKAGMENGVLTVTVPKVEMKKPEVKSIHISG 159          
BLAST of FC877782 vs. ExPASy Swiss-Prot
Match: HSP11_MEDSA (18.1 kDa class I heat shock protein (Fragment) OS=Medicago sativa GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 2.252e-42
Identity = 87/144 (60.42%), Postives = 97/144 (67.36%), Query Frame = 3
Query:   78 DPFSLDVWDPFRDFPFPSGYSSALSSQFPPETSAVVNARVDWKETPEAHVFKADLPGLXXXXXXXXXXXXXXLQISGQRKIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKASMESGXXXXXXXXXXXXXXXXXAIEIS 509
            DPFSLDVWDPF+DFPF +   SA  S FP E SA V+ R+DWKETPEAHVFKADLPGL              LQISG+R +EKEDKND WHRVERSSG F RRFRLPEN KMDQ+KA+ME+G                 +IEIS
Sbjct:    1 DPFSLDVWDPFKDFPFTNSALSA--SSFPQENSAFVSTRIDWKETPEAHVFKADLPGLKKEEVKVEIEDDRVLQISGERNVEKEDKNDQWHRVERSSGKFMRRFRLPENAKMDQVKAAMENGVLTVTVPKEEIKKPEVKSIEIS 142          
BLAST of FC877782 vs. ExPASy Swiss-Prot
Match: HSP11_SOLPE (17.7 kDa class I heat shock protein OS=Solanum peruvianum PE=2 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 2.941e-42
Identity = 93/162 (57.41%), Postives = 104/162 (64.20%), Query Frame = 3
Query:   30 MSLIPSFFGNRRSS-VSDPFSLDVWDPFRDFPFPSGYSSALSSQFPPETSAVVNARVDWKETPEAHVFKADLPGLXXXXXXXXXXXXXXLQISGQRKIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKASMESGXXXXXXXXXXXXXXXXXAIEISG 512
            MSLIP  FG+RRSS + DPFS+DV+DPFR+  FP   S         ETSA  N R+DWKETPEAHVFKADLPGL              LQISG+R +EKEDKND W RVERSSG F RRFRLPEN KMDQ+KASME+G                 +IEISG
Sbjct:    1 MSLIPRIFGDRRSSSMFDPFSIDVFDPFRELGFPGTNSG--------ETSAFANTRIDWKETPEAHVFKADLPGLKLEEVKVEVEEDRVLQISGERNMEKEDKNDKWQRVERSSGKFMRRFRLPENAKMDQVKASMENGVLTVTVPKEEMKKPDVKSIEISG 154          
BLAST of FC877782 vs. ExPASy Swiss-Prot
Match: HSP11_SOLLC (17.8 kDa class I heat shock protein OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 5.017e-42
Identity = 91/162 (56.17%), Postives = 104/162 (64.20%), Query Frame = 3
Query:   30 MSLIPSFFGNRRSS-VSDPFSLDVWDPFRDFPFPSGYSSALSSQFPPETSAVVNARVDWKETPEAHVFKADLPGLXXXXXXXXXXXXXXLQISGQRKIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKASMESGXXXXXXXXXXXXXXXXXAIEISG 512
            MSLIP  FG+RRSS + DPFS+DV+DPFR+  FPS  S         E+SA  N R+DWKETPE HVFK DLPGL              LQISG+R +EKEDKND WHR+ERSSG F RRFRLPEN KMDQ+KASME+G                 +IEISG
Sbjct:    1 MSLIPRIFGDRRSSSMFDPFSIDVFDPFRELGFPSTNSG--------ESSAFANTRIDWKETPEPHVFKVDLPGLKKEEVKVEVEEDRVLQISGERNVEKEDKNDKWHRMERSSGKFMRRFRLPENAKMDQVKASMENGVLTVTVPKEEVKKPEVKSIEISG 154          
BLAST of FC877782 vs. ExPASy Swiss-Prot
Match: HS17C_ARATH (17.6 kDa class I heat shock protein 3 OS=Arabidopsis thaliana GN=HSP17.6C PE=2 SV=2)

HSP 1 Score: 170.244 bits (430), Expect = 8.558e-42
Identity = 89/161 (55.28%), Postives = 107/161 (66.46%), Query Frame = 3
Query:   30 MSLIPSFFGNRRSSVSDPFSLDVWDPFRDFPFPSGYSSALSSQFPPETSAVVNARVDWKETPEAHVFKADLPGLXXXXXXXXXXXXXXLQISGQRKIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKASMESGXXXXXXXXXXXXXXXXXAIEISG 512
            MSLIPS FG RR++V DPFSLDV+DPF  F  PSG ++A +     + +A  NA+VDW+ETPEAHVFKADLPGL              LQISG+R  E E+KND WHRVERSSG F+RRFRLPEN KM++IKASME+G                 +I+ISG
Sbjct:    1 MSLIPSIFGGRRTNVFDPFSLDVFDPFEGFLTPSGLANAPAM----DVAAFTNAKVDWRETPEAHVFKADLPGLRKEEVKVEVEDGNILQISGERSNENEEKNDKWHRVERSSGKFTRRFRLPENAKMEEIKASMENGVLSVTVPKVPEKKPEVKSIDISG 157          
BLAST of FC877782 vs. ExPASy Swiss-Prot
Match: HS181_ARATH (18.1 kDa class I heat shock protein OS=Arabidopsis thaliana GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 4.248e-41
Identity = 87/161 (54.04%), Postives = 104/161 (64.60%), Query Frame = 3
Query:   30 MSLIPSFFGNRRSSVSDPFSLDVWDPFRDFPFPSGYSSALSSQFPPETSAVVNARVDWKETPEAHVFKADLPGLXXXXXXXXXXXXXXLQISGQRKIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKASMESGXXXXXXXXXXXXXXXXXAIEISG 512
            MSLIPS FG RRS+V DPFS D+WDPF  F  PS  S+  ++    + +A  NARVDWKETPEAHVFKADLPGL              LQISG+R  E E+KND WHRVER+SG F RRFRLPEN KM+++KA+ME+G                 +I+ISG
Sbjct:    1 MSLIPSIFGGRRSNVFDPFSQDLWDPFEGFFTPS--SALANASTARDVAAFTNARVDWKETPEAHVFKADLPGLKKEEVKVEVEDKNVLQISGERSKENEEKNDKWHRVERASGKFMRRFRLPENAKMEEVKATMENGVLTVVVPKAPEKKPQVKSIDISG 159          
BLAST of FC877782 vs. ExPASy Swiss-Prot
Match: HSP17_ARATH (17.4 kDa class I heat shock protein OS=Arabidopsis thaliana GN=HSP17.4A PE=1 SV=2)

HSP 1 Score: 167.162 bits (422), Expect = 7.245e-41
Identity = 84/161 (52.17%), Postives = 105/161 (65.22%), Query Frame = 3
Query:   30 MSLIPSFFGNRRSSVSDPFSLDVWDPFRDFPFPSGYSSALSSQFPPETSAVVNARVDWKETPEAHVFKADLPGLXXXXXXXXXXXXXXLQISGQRKIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKASMESGXXXXXXXXXXXXXXXXXAIEISG 512
            MSL+PSFFG RR++V DPFSLDVWDPF  F  P      L++    + +A  NA+VDW+ETPEAHVFKAD+PGL              LQISG+R  E E+K+DTWHRVERSSG F RRFRLPEN K++++KASME+G                 +++ISG
Sbjct:    1 MSLVPSFFGGRRTNVFDPFSLDVWDPFEGFLTPG-----LTNAPAKDVAAFTNAKVDWRETPEAHVFKADVPGLKKEEVKVEVEDGNILQISGERSSENEEKSDTWHRVERSSGKFMRRFRLPENAKVEEVKASMENGVLSVTVPKVQESKPEVKSVDISG 156          
BLAST of FC877782 vs. ExPASy Swiss-Prot
Match: HSP11_HELAN (17.6 kDa class I heat shock protein OS=Helianthus annuus GN=HSP17.6 PE=2 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 8.010e-40
Identity = 80/138 (57.97%), Postives = 100/138 (72.46%), Query Frame = 3
Query:   30 MSLIPSFFGNRRSSVSDPFSLDVWDPFRDFPFPSGYSSALSSQFPPETSAVVNARVDWKETPEAHVFKADLPGLXXXXXXXXXXXXXXLQISGQRKIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKASMESG 443
            MS+IPSFF ++RS++ DPFSLD WDPF+           +S++   ET+A+VNAR+DWKETPEAHV KADLPG+              LQISG+R  E+E+K+DTWHRVERSSG F RRFRLPEN KMD++KA ME+G
Sbjct:    1 MSIIPSFFTSKRSNIFDPFSLDTWDPFQGI---------ISTEPARETAAIVNARIDWKETPEAHVLKADLPGMKKEEVKVEVEDGRVLQISGERCREQEEKDDTWHRVERSSGKFIRRFRLPENAKMDEVKAMMENG 129          
The following BLAST results are available for this feature:
BLAST of FC877782 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
HSP15_SOYBN5.927e-4356.5217.6 kDa class I heat shock protein OS=Glycine max... [more]
HS17A_ARATH7.741e-4362.4117.6 kDa class I heat shock protein 1 OS=Arabidops... [more]
HSP12_DAUCA1.011e-4254.0418.0 kDa class I heat shock protein OS=Daucus caro... [more]
HSP11_MEDSA2.252e-4260.4218.1 kDa class I heat shock protein (Fragment) OS=... [more]
HSP11_SOLPE2.941e-4257.4117.7 kDa class I heat shock protein OS=Solanum per... [more]
HSP11_SOLLC5.017e-4256.1717.8 kDa class I heat shock protein OS=Solanum lyc... [more]
HS17C_ARATH8.558e-4255.2817.6 kDa class I heat shock protein 3 OS=Arabidops... [more]
HS181_ARATH4.248e-4154.0418.1 kDa class I heat shock protein OS=Arabidopsis... [more]
HSP17_ARATH7.245e-4152.1717.4 kDa class I heat shock protein OS=Arabidopsis... [more]
HSP11_HELAN8.010e-4057.9717.6 kDa class I heat shock protein OS=Helianthus ... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA62BH11RM1 IVIA1 Citrus clementina cDNA clone IC0AAA62BH11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877782 ID=FC877782; Name=FC877782; organism=Citrus clementina; type=EST; length=675bp
CGAAAGCCGTATCACTCTATTGAGAAACGATGTCGTTGATTCCAAGCTTC
TTCGGAAACCGACGCAGCAGTGTCTCTGATCCATTTTCACTCGACGTTTG
GGATCCATTCAGGGACTTCCCTTTCCCTTCCGGTTATTCGTCTGCGCTGT
CCTCTCAGTTCCCTCCAGAAACCTCTGCTGTCGTTAATGCCCGCGTGGAC
TGGAAGGAAACCCCGGAAGCCCACGTGTTCAAGGCCGATCTTCCGGGGCT
CCGGAAAGAGGAAGTGAAGGTCGAGGTCGAAGACGACAGGGTGCTTCAGA
TAAGCGGTCAGAGGAAGATTGAGAAGGAAGACAAGAACGACACGTGGCAT
CGCGTTGAGCGCAGCAGTGGCATGTTCTCAAGGAGGTTCAGGTTACCTGA
GAATGTGAAGATGGATCAGATTAAGGCTTCCATGGAGAGTGGTGTGCTCA
CTGTTACTGTTCCGAAAGTGGAGGTGACCAAACCTGATGTTAAGGCTATC
GAAATCTCTGGTTAAACCAGTGTCTGTCTGTATGTCTTTATGCATACTTG
TATAAGGATGCTGTGATGTTTTGGTTTTGTAATTTGCTTGCATGAATGTT
TGTGTAATGGTATTCTGGGTGTAATCAATAAACTGGACTGTTTTTTGAAA
AAAAAAAAAAAAAAAAAAAAAAAAA
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