FC877782

Overview
NameFC877782
Unique NameFC877782
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length675
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3765 contig Ccv1_Contig3765:7..681. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877782 vs. ExPASy Swiss-Prot
Match: HS166_ORYSJ (16.6 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP16.6 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 5.767e-22
Identity = 66/157 (42.04%), Postives = 81/157 (51.59%), Query Frame = 3
Query:   60 RRSSVSDPFSLDVW---DPFRDFPFPSGYSSALSSQFPPETSAVVNARVDWKETPEAHVFKADLPGLXXXXXXXXXXXXXXLQISGQRKIEKE--DKNDT-WHRVERSSGMFSRRFRLPENVKMDQIKASMESGXXXXXXXXXXXXXXXXXAIEISG 512
            R  +V DP S+D W   DPF       G   +L+ + P     + N RVDWKETP AHVF ADLPG+              L ISG+R  E++   KND  WH VERSSG F RRFRLP   ++DQ+ ASM++G                 AI ISG
Sbjct:    5 RSGNVLDPMSVDFWADADPF-------GAVRSLAERCP----VLTNVRVDWKETPTAHVFTADLPGVRKDQAKVEVEDGGVLVISGERAREEDVDGKNDERWHHVERSSGKFQRRFRLPRGARVDQVSASMDNGVLTVTVPKEETKKPQLKAIPISG 150          
BLAST of FC877782 vs. ExPASy Swiss-Prot
Match: HSP41_SOYBN (22.0 kDa class IV heat shock protein OS=Glycine max GN=HSP22.0 PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.328e-21
Identity = 56/125 (44.80%), Postives = 69/125 (55.20%), Query Frame = 3
Query:   93 DVW-----DPFR---DFPFPSGYSSALSSQFPPETSAVVNARVDWKETPEAHVFKADLPGLXXXXXXXXXXXXXXLQISGQRKIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKASMESG 443
            D+W     DPFR     PF      A  +  P        ARVDWKETPE HV   D+PGL              L++SG+RK E+E K D WHRVERS G F R+FRLP+NV +D +KA +E+G
Sbjct:   35 DLWSDRFPDPFRVLEHIPFGVDKDEASMAMSP--------ARVDWKETPEGHVIMLDVPGLKREEIKVEVEENRVLRVSGERKKEEEKKGDHWHRVERSYGKFWRQFRLPQNVDLDSVKAKLENG 151          
BLAST of FC877782 vs. ExPASy Swiss-Prot
Match: HSP41_PEA (22.7 kDa class IV heat shock protein OS=Pisum sativum GN=HSP22.7 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.328e-21
Identity = 59/138 (42.75%), Postives = 78/138 (56.52%), Query Frame = 3
Query:   33 SLIPSFFGNRRSSVSDPFSLDVWDPFRDFP-FPSGYSSALSSQFPPETSAVVNARVDWKETPEAHVFKADLPGLXXXXXXXXXXXXXXLQISGQRKIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKASMESG 443
            SL+P F  +  + +SD +S    DPFR     P G      S        + +ARVDWKETPE HV   D+PGL              L++SG+RK E++ K D WHRVERS G F R+F+LP+NV +D +KA ME+G
Sbjct:   29 SLLP-FIDSPNTLLSDLWSDRFPDPFRVLEQIPYGVEKHEPS------ITLSHARVDWKETPEGHVIMVDVPGLKKDDIKIEVEENRVLRVSGERKKEEDKKGDHWHRVERSYGKFWRQFKLPQNVDLDSVKAKMENG 159          
BLAST of FC877782 vs. ExPASy Swiss-Prot
Match: HSP22_ARATH (22.0 kDa heat shock protein OS=Arabidopsis thaliana GN=HSP22.0 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 5.968e-19
Identity = 50/118 (42.37%), Postives = 67/118 (56.78%), Query Frame = 3
Query:   93 DVWDPFRDFPFPSGYSSALSSQFPPETSAVVN-ARVDWKETPEAHVFKADLPGLXXXXXXXXXXXXXXLQISGQRKIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKASMESG 443
            D+W     FP P      +      +TS  ++ ARVDWKET E H    D+PGL              L++SG+RK E+E K D WHRVERS G F R+F+LP+NV M+ +KA +E+G
Sbjct:   40 DLW--LDRFPDPFKILERIPLGLERDTSVALSPARVDWKETAEGHEIMLDIPGLKKDEVKIEVEENGVLRVSGERKREEEKKGDQWHRVERSYGKFWRQFKLPDNVDMESVKAKLENG 155          
BLAST of FC877782 vs. ExPASy Swiss-Prot
Match: HSP12_SOYBN (Class I heat shock protein (Fragment) OS=Glycine max GN=HSP6834-A PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.869e-18
Identity = 45/73 (61.64%), Postives = 51/73 (69.86%), Query Frame = 3
Query:  294 LQISGQRKIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKASMESGXXXXXXXXXXXXXXXXXAIEISG 512
            LQISG+R +EKEDKNDTWHRVERSSG F R FRLP+N K+DQ+KASME+G                 AIEISG
Sbjct:    2 LQISGERNVEKEDKNDTWHRVERSSGKFMRSFRLPDNAKVDQVKASMENGVLTVTVPKEEIKKPDVKAIEISG 74          
BLAST of FC877782 vs. ExPASy Swiss-Prot
Match: HS189_ORYSJ (18.9 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP18.9 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.470e-17
Identity = 50/126 (39.68%), Postives = 69/126 (54.76%), Query Frame = 3
Query:   78 DPFSLDVWDPFRDF----PFPSGYSSALSSQFPPETSAVVNARVDWKETPEAHVFKADLPGLXXXXXXXXXXXXXXLQISGQRKIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKASMESG 443
            +P S+D+ +PF D      F +  S+A ++   P T     A +DWKET  AHVF AD+PG+              L+ISGQR    E+K + WHRVERSS  F R  RLP N   D + A++++G
Sbjct:   34 EPVSVDIMEPFMDAISLTAFAAAPSAAAAAAGVPST-----ASMDWKETAAAHVFMADMPGVRREEVRVEVEEEKVLRISGQRARAAEEKGERWHRVERSSERFVRTVRLPPNANTDGVHAALDNG 154          
BLAST of FC877782 vs. ExPASy Swiss-Prot
Match: HS17B_ORYSJ (17.9 kDa heat shock protein 2 OS=Oryza sativa subsp. japonica GN=HSP17.9B PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.521e-14
Identity = 43/123 (34.96%), Postives = 66/123 (53.66%), Query Frame = 3
Query:   78 DPFSLDVWDPFRDFPFPSGYSSALSSQFPPETSAVVNARVDWKETPEAHVFKADLP-GLXXXXXXXXXXXXXXLQISGQRKIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKASMESG 443
            D  + D W+PF  F    G + A  +    +TSA  N  ++ +ET EA+VF+ADLP G+              L I+G+R + +E+K    H +ERS   F  RF LP++  +D ++ASM+ G
Sbjct:    8 DTLAFDAWNPFSIF----GTTVAADAWLASDTSAFANTYIESRETAEAYVFRADLPAGVKKEEVRVEVDEGNVLVITGERSVRREEKGQRSHHIERSCATFFGRFHLPDDAVVDLVRASMDGG 126          
BLAST of FC877782 vs. ExPASy Swiss-Prot
Match: HS232_ORYSJ (23.2 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP23.2 PE=2 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 2.197e-13
Identity = 50/144 (34.72%), Postives = 73/144 (50.69%), Query Frame = 3
Query:   33 SLIPSFFGN--RRSSVSDPFSLDVWDPFRDFPF-PSGYSSALSSQFPPETSAVVNARVDWKETPEAHVFKADLPGLXXXXXXXXXXXXXXLQISGQRK----IEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKASMESG 443
            +L+P F G   R  +V +   L   DPFR     P G+          + + +  ARVDW+ET +AH    D+PG+              L+ISG+R+     E++   D WHR ERS G F R+ RLP+N  +D I AS+++G
Sbjct:   28 ALLPWFGGGGARDEAVPELGLLAAADPFRILEHVPFGFDR-------DDVAMLSMARVDWRETGDAHEVVVDVPGMRKEDLRVEVEDNRVLRISGERRREETTEQKGGGDHWHREERSYGRFWRQLRLPDNADLDSIAASLDNG 164          
BLAST of FC877782 vs. ExPASy Swiss-Prot
Match: HS219_ORYSJ (21.9 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP21.9 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.391e-13
Identity = 50/145 (34.48%), Postives = 76/145 (52.41%), Query Frame = 3
Query:   33 SLIPSFFGNRRSSVSDPFSLDVWDPFRDFPFPSGYSSALSSQFPPETSAVVNARVDWKETPEAHVFKADLPGL-XXXXXXXXXXXXXXLQISGQRK-----IEKEDKND--TWHRVERSSGMFSRRFRLPENVKMDQIKASMESG 443
            +L+P  +G     + DPF +    P R    P+G  +A ++   P  +AV  AR DWKETPEAHV   D+PG+               L++SG+R+      E+E + D   WHR ER++G F RRFR+P    + ++ A ++ G
Sbjct:   29 ALVPYGYGYM---LDDPFRVLEQSPLR----PAGGVAAAAAAGEP--AAVALARCDWKETPEAHVVTVDVPGVRRGDVRVEVDEASRVLRVSGERRRAGAAEEEEGERDGVRWHRAERAAGRFWRRFRMPPGADVGRVAARLDDG 164          
The following BLAST results are available for this feature:
BLAST of FC877782 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
HS166_ORYSJ5.767e-2242.0416.6 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HSP41_SOYBN8.328e-2144.8022.0 kDa class IV heat shock protein OS=Glycine ma... [more]
HSP41_PEA8.328e-2142.7522.7 kDa class IV heat shock protein OS=Pisum sati... [more]
HSP22_ARATH5.968e-1942.3722.0 kDa heat shock protein OS=Arabidopsis thalian... [more]
HSP12_SOYBN3.869e-1861.64Class I heat shock protein (Fragment) OS=Glycine m... [more]
HS189_ORYSJ1.470e-1739.6818.9 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HS17B_ORYSJ1.521e-1434.9617.9 kDa heat shock protein 2 OS=Oryza sativa subs... [more]
HS232_ORYSJ2.197e-1334.7223.2 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HS219_ORYSJ6.391e-1334.4821.9 kDa heat shock protein OS=Oryza sativa subsp.... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA62BH11RM1 IVIA1 Citrus clementina cDNA clone IC0AAA62BH11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877782 ID=FC877782; Name=FC877782; organism=Citrus clementina; type=EST; length=675bp
CGAAAGCCGTATCACTCTATTGAGAAACGATGTCGTTGATTCCAAGCTTC
TTCGGAAACCGACGCAGCAGTGTCTCTGATCCATTTTCACTCGACGTTTG
GGATCCATTCAGGGACTTCCCTTTCCCTTCCGGTTATTCGTCTGCGCTGT
CCTCTCAGTTCCCTCCAGAAACCTCTGCTGTCGTTAATGCCCGCGTGGAC
TGGAAGGAAACCCCGGAAGCCCACGTGTTCAAGGCCGATCTTCCGGGGCT
CCGGAAAGAGGAAGTGAAGGTCGAGGTCGAAGACGACAGGGTGCTTCAGA
TAAGCGGTCAGAGGAAGATTGAGAAGGAAGACAAGAACGACACGTGGCAT
CGCGTTGAGCGCAGCAGTGGCATGTTCTCAAGGAGGTTCAGGTTACCTGA
GAATGTGAAGATGGATCAGATTAAGGCTTCCATGGAGAGTGGTGTGCTCA
CTGTTACTGTTCCGAAAGTGGAGGTGACCAAACCTGATGTTAAGGCTATC
GAAATCTCTGGTTAAACCAGTGTCTGTCTGTATGTCTTTATGCATACTTG
TATAAGGATGCTGTGATGTTTTGGTTTTGTAATTTGCTTGCATGAATGTT
TGTGTAATGGTATTCTGGGTGTAATCAATAAACTGGACTGTTTTTTGAAA
AAAAAAAAAAAAAAAAAAAAAAAAA
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