FC877791

Overview
NameFC877791
Unique NameFC877791
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length862
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC877791 vs. ExPASy Swiss-Prot
Match: NIP11_ORYSJ (Aquaporin NIP1-1 OS=Oryza sativa subsp. japonica GN=NIP1-1 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.153e-12
Identity = 52/185 (28.11%), Postives = 84/185 (45.41%), Query Frame = 3
Query:  285 LNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVG 839
            +N  + G +   G+A  +G  + ++VY    ISG H NPAVT      R+    +   Y  AQ LGA    G ++      +  + G     +D  +    L  E I TF L++ +       R+     +  LA L +G  + +  L   PI+G  +NPARS G A+I  + ++    W++ VG
Sbjct:   70 INQSKNGQITFPGVAIVWGLAVMVMVYAVGHISGAHFNPAVTLAFATCRRFPWRQVPAYAAAQMLGATLAAGTLRLMFGGRHEHFPGTLPAGSDVQS----LVLEFIITFYLMFVISGVATDNRA-----IGELAGLAVGATILLNVLIAGPISGASMNPARSLGPAMIGGEYRS---IWVYIVG 242          
BLAST of FC877791 vs. ExPASy Swiss-Prot
Match: PDUF_SALTY (Propanediol diffusion facilitator OS=Salmonella typhimurium GN=pduF PE=2 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 3.673e-12
Identity = 56/175 (32.00%), Postives = 77/175 (44.00%), Query Frame = 3
Query:  306 GVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRY-------GGGANEL----------ADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFG 779
            G+  + I W  G  I + VY TAGISGGH+NPAVT  L+L       + L Y++AQ  GA  G         S +  +        G    L          A   N       E++ T +L+  + + TD            LAPL IG  V ++  +T P+TG  +NPAR FG
Sbjct:   38 GLWEICIIWGLG--ISLAVYLTAGISGGHLNPAVTIALWLFACFPKQKVLPYIIAQFAGAFGGALLAYVLYSSLFTEFETAHHMVRGSVESLQLASIFSTYPAAALNVWQAALVEVVITSILMGMIMALTDDGNGIPKG---PLAPLLIGILVAVIGASTGPLTGFAMNPARDFG 207          
BLAST of FC877791 vs. ExPASy Swiss-Prot
Match: NIP42_ARATH (Probable aquaporin NIP4-2 OS=Arabidopsis thaliana GN=NIP4-2 PE=2 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 8.182e-12
Identity = 48/179 (26.82%), Postives = 83/179 (46.37%), Query Frame = 3
Query:  303 GGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVG 839
            G +   GI   +G ++ +++Y T  ISG H NPAVT    + R+    +  LY+ AQ  G++     ++         + G         + G  L AEII +F+L++ +       R+  +     LA + +G  + +      PI+G  +NPARS G A++  + K     W++ VG
Sbjct:   71 GTITFPGICVTWGLIVMVMIYSTGHISGAHFNPAVTVTFAVFRRFPWYQVPLYIGAQLTGSLLASLTLRLMFNVTPKAFFG----TTPTDSSGQALVAEIIISFLLMFVISGVATDSRATGE-----LAGIAVGMTIILNVFVAGPISGASMNPARSLGPAIVMGRYKG---IWVYIVG 237          
BLAST of FC877791 vs. ExPASy Swiss-Prot
Match: NIP21_ORYSJ (Aquaporin NIP2-1 OS=Oryza sativa subsp. japonica GN=NIP2-1 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 8.182e-12
Identity = 60/191 (31.41%), Postives = 91/191 (47.64%), Query Frame = 3
Query:  300 CGGVGI----------LGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVY-TVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVG 839
            CG  GI          LG + A G ++ +++Y    ISG H+NPAVT    + R    I+   Y  AQ  GAIC    +KA    +     G    +   ++    L  E+I TF +++ T+  ATD +       V  LA L +G AV +  +    I+G  +NPAR+ G A+  NK   +D  WI+++G
Sbjct:   66 CGAAGISGSDLSRISQLGQSIAGGLIVTVMIYAVGHISGAHMNPAVTLAFAVFRHFPWIQVPFYWAAQFTGAICASFVLKAV--IHPVDVIGTTTPVGPHWH---SLVVEVIVTFNMMFVTLAVATDTRA------VGELAGLAVGSAVCITSIFAGAISGGSMNPARTLGPALASNK---FDGLWIYFLG 242          
BLAST of FC877791 vs. ExPASy Swiss-Prot
Match: AQPM_METTH (Aquaporin aqpM OS=Methanobacterium thermoautotrophicum GN=aqpM PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.069e-11
Identity = 55/166 (33.13%), Postives = 79/166 (47.59%), Query Frame = 3
Query:  306 GVGILG-------IAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLG-AICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFG 779
            G+G+LG       I  AFG  I   +Y    ISG HINPAVT GL+  +K      + Y++AQ LG A     F++    +     G GA     G      + AE +GTF+L+ T+      +R+ +       A + IG  V  +      ITG+ +NPAR+FG
Sbjct:   45 GIGLLGGLGDWVAIGLAFGFAIAASIYALGNISGCHINPAVTIGLWSVKKFPGRDVVPYIIAQLLGAAFASFIFLQCAGITAATIGGLGATAPFPGIGYWQAMLAETVGTFLLMITIMGIAVDERAPKG-----FAGIIIGLTVAGIITTIGNITGSSLNPARTFG 205          
BLAST of FC877791 vs. ExPASy Swiss-Prot
Match: NIP11_ARATH (Aquaporin NIP1-1 OS=Arabidopsis thaliana GN=NIP1-1 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.396e-11
Identity = 62/245 (25.31%), Postives = 100/245 (40.82%), Query Frame = 3
Query:  123 KDYHDPPPAPLIDFEELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGA---EIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGHSL 848
            +D H+P P    D        F + +IAEF+             +         +N      V + GIA  +G  I +L+Y    ISG HINPAVT       +  L +   Y+++Q +G+      ++      ++   G  +        G+ L A   E I TF L++ +       R+     +  LA L IG  V +  L   P++   +NP RS G A++Y     +   WI+ V  +L
Sbjct:   32 EDIHNPRPLKKQDSLLSVSVPFLQKLIAEFLGTYFLVFTGCASVV---------VNMQNDNVVTLPGIAIVWGLTIMVLIYSLGHISGAHINPAVTIAFASCGRFPLKQVPAYVISQVIGSTLAAATLRLLFGLDHDVCSGKHDVFIGSSPVGSDLQAFTMEFIVTFYLMFIISGVATDNRA-----IGELAGLAIGSTVLLNVLIAAPVSSASMNPGRSLGPALVYG---CYKGIWIYLVAPTL 259          
BLAST of FC877791 vs. ExPASy Swiss-Prot
Match: NIP14_ORYSJ (Aquaporin NIP1-4 OS=Oryza sativa subsp. japonica GN=NIP1-4 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.823e-11
Identity = 52/180 (28.89%), Postives = 85/180 (47.22%), Query Frame = 3
Query:  303 GGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFS-ATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVG 839
            G V   G+A A+G  +  +VY    +SG H+NPAVT G  +  +    RA  Y +AQ   A      ++     +  R+      L  G +    L  E + TF L++ + + ATD      D  V  +A + +G  + +  L   P++G  +NPARS G A++ +K  A    W++ +G
Sbjct:   84 GAVTFPGVAVAWGAAVMAMVYAVGHVSGAHLNPAVTLGFAVAGRFPWRRAPAYALAQTAAATAASVVLRLM---FGGRHAPVPATLPGGAH-AQSLVIEFVITFYLMFVIMAVATD------DQAVGHMAGVAVGGTIMLNVLFAGPVSGASMNPARSIGPALVGSKYTA---LWVYILG 250          
BLAST of FC877791 vs. ExPASy Swiss-Prot
Match: AQPM_ARCFU (Probable aquaporin aqpM OS=Archaeoglobus fulgidus GN=aqpM PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.823e-11
Identity = 60/173 (34.68%), Postives = 78/173 (45.09%), Query Frame = 3
Query:  282 NLNTDQCGGVGI-LGIAWAFGGMIFILVYCTAGISGGHINPAVT-----FGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGG-GANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFG 779
            N+     GG+G    I  AF   I  ++Y    ISG HINPAVT      G F GR+V     + Y+VAQ +GA  G     A         GG GA     G   G  +  E IGTF+L+  +      +R+      P  A L IG  V  +      ITG+ +NPAR+FG
Sbjct:   44 NIGIGALGGLGDWFAIGMAFALAIAAVIYSLGRISGAHINPAVTIALWSIGRFPGREV-----VPYIVAQFIGAALGSLLFLACVGPAAATVGGLGATAPFPGIGYGQAILTEAIGTFLLMLVIMGVAVDERAP-----PGFAGLVIGLTVGGIITTIGNITGSSLNPARTFG 206          
BLAST of FC877791 vs. ExPASy Swiss-Prot
Match: GLPF_PSEAE (Glycerol uptake facilitator protein OS=Pseudomonas aeruginosa GN=glpF PE=3 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 4.061e-11
Identity = 50/175 (28.57%), Postives = 76/175 (43.43%), Query Frame = 3
Query:  306 GVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYY-------NRYGGGANELA----------DGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFG 779
            G+  + I W  G  + + +Y +AG+SG H+NPAV+  L+L       +   Y+ AQ  GA C    V     S +       N   G  + LA             + G     E++ T +L+  + + TD            LAPL IG  + ++  A  P+TG  +NPAR FG
Sbjct:   43 GLWEISIIWGVG--VSMAIYLSAGVSGAHLNPAVSIALWLFAGFEGRKLPFYITAQVAGAFCAAALVYTLYSSLFIEFEQAQNIVRGSQDSLALASVFSTYPHPALSVGQAFLVEVVITAILMAVIMALTDDGNGLPRG---PLAPLLIGLLIAVIGSAMGPLTGFAMNPARDFG 212          
BLAST of FC877791 vs. ExPASy Swiss-Prot
Match: GLPF_HAEIN (Glycerol uptake facilitator protein OS=Haemophilus influenzae GN=glpF PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.061e-11
Identity = 55/180 (30.56%), Postives = 81/180 (45.00%), Query Frame = 3
Query:  306 GVGILGIAWAFGGMIFILVYCTAGISGGHINPAVT-----FGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGAN---------ELADGYNK--------GTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFG 779
            G+  + I W  G  + + VY TAG+SG H+NPAVT     F  F G+KV     + Y+++Q LGA      V A  ++ +  Y    N          LA  ++         G     E + T +L+  + + TD            LAPL IG  + ++  A  P+TG  +NPAR FG
Sbjct:   38 GLWEISIMWGMG--VALAVYATAGLSGAHLNPAVTIALWKFACFDGKKV-----IPYIISQMLGAFFAAALVYALYRNVFIDYETVHNIVRGTQESLSLAGTFSTYPHPSLSIGGAFAVEFVITAILMALIMALTDDGNGVPRG---PLAPLLIGILIAVIGGAMGPLTGFAMNPARDFG 207          
The following BLAST results are available for this feature:
BLAST of FC877791 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 176
Match NameE-valueIdentityDescription
NIP11_ORYSJ2.153e-1228.11Aquaporin NIP1-1 OS=Oryza sativa subsp. japonica G... [more]
PDUF_SALTY3.673e-1232.00Propanediol diffusion facilitator OS=Salmonella ty... [more]
NIP42_ARATH8.182e-1226.82Probable aquaporin NIP4-2 OS=Arabidopsis thaliana ... [more]
NIP21_ORYSJ8.182e-1231.41Aquaporin NIP2-1 OS=Oryza sativa subsp. japonica G... [more]
AQPM_METTH1.069e-1133.13Aquaporin aqpM OS=Methanobacterium thermoautotroph... [more]
NIP11_ARATH1.396e-1125.31Aquaporin NIP1-1 OS=Arabidopsis thaliana GN=NIP1-1... [more]
NIP14_ORYSJ1.823e-1128.89Aquaporin NIP1-4 OS=Oryza sativa subsp. japonica G... [more]
AQPM_ARCFU1.823e-1134.68Probable aquaporin aqpM OS=Archaeoglobus fulgidus ... [more]
GLPF_PSEAE4.061e-1128.57Glycerol uptake facilitator protein OS=Pseudomonas... [more]
GLPF_HAEIN4.061e-1130.56Glycerol uptake facilitator protein OS=Haemophilus... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA12AG03RM1 IVIA1 Citrus clementina cDNA clone IC0AAA12AG03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877791 ID=FC877791; Name=FC877791; organism=Citrus clementina; type=EST; length=862bp
CACACAGTCGTAGCTCTTGTTTCTCCCTCTCGTTTAATTAACAAAACAAA
AATAAAAGGGAAAAAATGGGGAAGGATGTTGAAGTTGCTGAGCAGCAAGG
CGGCGGCGGCGAGTTCTCAGCCAAGGACTACCACGACCCCCCTCCGGCGC
CGCTGATCGATTTCGAGGAGCTGGGCAAGTGGTCTTTTTACAGAGCTGTA
ATTGCTGAGTTCATCGCTACGCTTTTGTTTCTTTATGTTACCGTCTTGAC
TGTGATTGGATACAAGAGCCAGACTGATCCCAACTTGAATACCGATCAGT
GTGGTGGCGTTGGCATTCTTGGCATCGCTTGGGCCTTTGGTGGCATGATC
TTCATTCTCGTTTACTGCACAGCCGGTATTTCTGGTGGACATATCAACCC
GGCTGTGACATTCGGACTGTTCTTGGGGCGCAAGGTGTCGCTCATCCGAG
CTCTTTTGTACATGGTAGCACAGTGCTTGGGTGCAATCTGTGGTTGTGGG
TTTGTGAAGGCTTTCCAAAAATCATACTACAACAGGTATGGAGGTGGGGC
CAATGAGCTAGCTGATGGATACAACAAGGGCACCGGACTGGGTGCTGAGA
TCATCGGTACTTTCGTTCTTGTCTACACTGTTTTCTCTGCCACTGATCCT
AAGAGGAGCGCAAGAGACTCCCATGTTCCGGTCTTGGCACCACTCCCCAT
TGGGTTTGCTGTGTTCATGGTTCACTTGGCCACCATCCCCATCACCGGAA
CCGGCATCAACCCAGCTAGGAGTTTTGGAGCTGCTGTGATCTACAACAAG
GAGAAAGCCTGGGATGACCAATGGATCTTCTGGGTTGGACATTCATTGGA
GCTTTCGTTGCT
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