FC877791

Overview
NameFC877791
Unique NameFC877791
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length862
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC877791_ssr99 microsatellite FC877791_ssr99:99..110. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig13179 contig Ccv1_Contig13179:67..929. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877791 vs. ExPASy Swiss-Prot
Match: GLPF_SHIFL (Glycerol uptake facilitator protein OS=Shigella flexneri GN=glpF PE=3 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 6.927e-11
Identity = 53/189 (28.04%), Postives = 80/189 (42.33%), Query Frame = 3
Query:  318 LGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGG---------GANELAD-----------GYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQW 824
            + + W  G  + + +Y TAG+SG H+NPAVT  L+L       + + ++V+Q  GA C    V      YYN +           G+ E  D             N       E++ T +L+  + + TD            LAPL IG  + ++  +  P+TG  +NPAR FG  V      AW   W
Sbjct:   44 ISVIWGLG--VAMAIYLTAGVSGAHLNPAVTIALWLFACFDKRKVIPFIVSQVAGAFCAAALVYGL---YYNLFFDFEQTHHIVRGSVESVDLAGTFSTYPNPHINFVQAFAVEMVITAILMGLILALTDDGNGVPRG---PLAPLLIGLLIAVIGASMGPLTGFAMNPARDFGPKVF-----AWLAGW 219          
BLAST of FC877791 vs. ExPASy Swiss-Prot
Match: GLPF_ECOLI (Glycerol uptake facilitator protein OS=Escherichia coli (strain K12) GN=glpF PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.927e-11
Identity = 53/189 (28.04%), Postives = 80/189 (42.33%), Query Frame = 3
Query:  318 LGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGG---------GANELAD-----------GYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQW 824
            + + W  G  + + +Y TAG+SG H+NPAVT  L+L       + + ++V+Q  GA C    V      YYN +           G+ E  D             N       E++ T +L+  + + TD            LAPL IG  + ++  +  P+TG  +NPAR FG  V      AW   W
Sbjct:   44 ISVIWGLG--VAMAIYLTAGVSGAHLNPAVTIALWLFACFDKRKVIPFIVSQVAGAFCAAALVYGL---YYNLFFDFEQTHHIVRGSVESVDLAGTFSTYPNPHINFVQAFAVEMVITAILMGLILALTDDGNGVPRG---PLAPLLIGLLIAVIGASMGPLTGFAMNPARDFGPKVF-----AWLAGW 219          
BLAST of FC877791 vs. ExPASy Swiss-Prot
Match: GLPF_ECOL6 (Glycerol uptake facilitator protein OS=Escherichia coli O6 GN=glpF PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.927e-11
Identity = 53/189 (28.04%), Postives = 80/189 (42.33%), Query Frame = 3
Query:  318 LGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGG---------GANELAD-----------GYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQW 824
            + + W  G  + + +Y TAG+SG H+NPAVT  L+L       + + ++V+Q  GA C    V      YYN +           G+ E  D             N       E++ T +L+  + + TD            LAPL IG  + ++  +  P+TG  +NPAR FG  V      AW   W
Sbjct:   44 ISVIWGLG--VAMAIYLTAGVSGAHLNPAVTIALWLFACFDKRKVIPFIVSQVAGAFCAAALVYGL---YYNLFFDFEQTHHIVRGSVESVDLAGTFSTYPNPHINFVQAFAVEMVITAILMGLILALTDDGNGVPRG---PLAPLLIGLLIAVIGASMGPLTGFAMNPARDFGPKVF-----AWLAGW 219          
BLAST of FC877791 vs. ExPASy Swiss-Prot
Match: GLPF_ECO57 (Glycerol uptake facilitator protein OS=Escherichia coli O157:H7 GN=glpF PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.927e-11
Identity = 53/189 (28.04%), Postives = 80/189 (42.33%), Query Frame = 3
Query:  318 LGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGG---------GANELAD-----------GYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQW 824
            + + W  G  + + +Y TAG+SG H+NPAVT  L+L       + + ++V+Q  GA C    V      YYN +           G+ E  D             N       E++ T +L+  + + TD            LAPL IG  + ++  +  P+TG  +NPAR FG  V      AW   W
Sbjct:   44 ISVIWGLG--VAMAIYLTAGVSGAHLNPAVTIALWLFACFDKRKVIPFIVSQVAGAFCAAALVYGL---YYNLFFDFEQTHHIVRGSVESVDLAGTFSTYPNPHINFVQAFAVEMVITAILMGLILALTDDGNGVPRG---PLAPLLIGLLIAVIGASMGPLTGFAMNPARDFGPKVF-----AWLAGW 219          
BLAST of FC877791 vs. ExPASy Swiss-Prot
Match: NIP23_MAIZE (Aquaporin NIP2-3 OS=Zea mays GN=NIP2-3 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.047e-11
Identity = 51/174 (29.31%), Postives = 81/174 (46.55%), Query Frame = 3
Query:  318 LGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVG 839
            LG + A G ++ +++Y T  ISG H+NPAVT      R    I+   Y  AQ  GA+C    +KA  +       G        ++    L  EI+ TF +++   +     R+     V  LA L +G AV +  +   P++G  +NPAR+   AV  N    +   WI+++G
Sbjct:   88 LGQSVAGGLIVTVMIYATGHISGAHMNPAVTLSFACFRHFPWIQVPFYWAAQFTGAMCAAFVLKAVLQPI--AVIGTTTPSGPHWH---ALAIEIVVTFNMMFVTCAVATDSRA-----VGELAGLAVGSAVCITSIFAGPVSGGSMNPARTLAPAVASN---VFTGLWIYFLG 248          
BLAST of FC877791 vs. ExPASy Swiss-Prot
Match: AQP3_RAT (Aquaporin-3 OS=Rattus norvegicus GN=Aqp3 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.047e-11
Identity = 54/179 (30.17%), Postives = 73/179 (40.78%), Query Frame = 3
Query:  312 GILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGT----------------GLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPI-------TGTGINPARSFG 779
            G L I  AFG  + + +     +SG H+NPAVTF +    +   I+  +Y +AQ LGA  G G V  F   Y   +    NEL      GT                G   + IGT  L+  V +  DP  +          P+P G   F V L  + I       +G  +NPAR FG
Sbjct:   55 GFLTINLAFGFAVTLAILVAGQVSGAHLNPAVTFAMCFLAREPWIKLPIYTLAQTLGAFLGAGIV--FGLYYDAIWAFAGNELVVSGPNGTAGIFATYPSGHLDMVNGFFDQFIGTAALIVCVLAIVDPYNN----------PVPRGLEAFTVGLVVLVIGTSMGFNSGYAVNPARDFG 221          
The following BLAST results are available for this feature:
BLAST of FC877791 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 176
Match NameE-valueIdentityDescription
GLPF_SHIFL6.927e-1128.04Glycerol uptake facilitator protein OS=Shigella fl... [more]
GLPF_ECOLI6.927e-1128.04Glycerol uptake facilitator protein OS=Escherichia... [more]
GLPF_ECOL66.927e-1128.04Glycerol uptake facilitator protein OS=Escherichia... [more]
GLPF_ECO576.927e-1128.04Glycerol uptake facilitator protein OS=Escherichia... [more]
NIP23_MAIZE9.047e-1129.31Aquaporin NIP2-3 OS=Zea mays GN=NIP2-3 PE=2 SV=1[more]
AQP3_RAT9.047e-1130.17Aquaporin-3 OS=Rattus norvegicus GN=Aqp3 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionIC0AAA12AG03RM1 IVIA1 Citrus clementina cDNA clone IC0AAA12AG03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877791 ID=FC877791; Name=FC877791; organism=Citrus clementina; type=EST; length=862bp
CACACAGTCGTAGCTCTTGTTTCTCCCTCTCGTTTAATTAACAAAACAAA
AATAAAAGGGAAAAAATGGGGAAGGATGTTGAAGTTGCTGAGCAGCAAGG
CGGCGGCGGCGAGTTCTCAGCCAAGGACTACCACGACCCCCCTCCGGCGC
CGCTGATCGATTTCGAGGAGCTGGGCAAGTGGTCTTTTTACAGAGCTGTA
ATTGCTGAGTTCATCGCTACGCTTTTGTTTCTTTATGTTACCGTCTTGAC
TGTGATTGGATACAAGAGCCAGACTGATCCCAACTTGAATACCGATCAGT
GTGGTGGCGTTGGCATTCTTGGCATCGCTTGGGCCTTTGGTGGCATGATC
TTCATTCTCGTTTACTGCACAGCCGGTATTTCTGGTGGACATATCAACCC
GGCTGTGACATTCGGACTGTTCTTGGGGCGCAAGGTGTCGCTCATCCGAG
CTCTTTTGTACATGGTAGCACAGTGCTTGGGTGCAATCTGTGGTTGTGGG
TTTGTGAAGGCTTTCCAAAAATCATACTACAACAGGTATGGAGGTGGGGC
CAATGAGCTAGCTGATGGATACAACAAGGGCACCGGACTGGGTGCTGAGA
TCATCGGTACTTTCGTTCTTGTCTACACTGTTTTCTCTGCCACTGATCCT
AAGAGGAGCGCAAGAGACTCCCATGTTCCGGTCTTGGCACCACTCCCCAT
TGGGTTTGCTGTGTTCATGGTTCACTTGGCCACCATCCCCATCACCGGAA
CCGGCATCAACCCAGCTAGGAGTTTTGGAGCTGCTGTGATCTACAACAAG
GAGAAAGCCTGGGATGACCAATGGATCTTCTGGGTTGGACATTCATTGGA
GCTTTCGTTGCT
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