FC877802
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC877802 vs. ExPASy Swiss-Prot
Match: CLCN6_RABIT (Chloride transport protein 6 OS=Oryctolagus cuniculus GN=CLCN6 PE=2 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 2.501e-19 Identity = 71/223 (31.84%), Postives = 98/223 (43.95%), Query Frame = 3 Query: 276 TNTTSQIAIVGAN------ICP---IESLDYEIVENELFKQDWRARRKVEIFQYVVFKWTLALLIGVLTGLAAVFCNFFVENIAGFKLLLINN----------LMLNDRHFMGFVANTSXXXXXXXXXXXXXXXXXXXXXGSGIPEVKAYLNGIDAHSILAPSTLFVKIFGSIFGVAAGFVVGKEGPMVHTGACIANLLGQGGSKKYHLTWRWLRYFKNDRDR 887 T T ++ I+G I P ESLDY+ N+ + + + Y V KWT+ IGV TGL +F +FFV+ K ++ L L+ +GF GSGIPE+K YLNG+ I+ TL K+FG +F VA G VGKEGPM+H+GA + L Q S YF++DRD+ Sbjct: 23 TRTPEELTILGETQEEEDEILPRKDYESLDYDRCINDPYLEVLETMDHKKGRWYEVVKWTVVFAIGVCTGLVGLFVDFFVQLFTQLKFGVVEASVEECSQKGCLALSLLELLGF-------NLTFVFLASLLVLIEPVAAGSGIPEIKCYLNGVKVPGIVRLRTLLCKVFGVLFSVAGGLFVGKEGPMIHSGAVVGAGLPQFQSISLRKIQFNFPYFRSDRDK 238
BLAST of FC877802 vs. ExPASy Swiss-Prot
Match: CLCD_DICDI (Chloride channel protein D OS=Dictyostelium discoideum GN=clcD PE=3 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 7.277e-19 Identity = 55/187 (29.41%), Postives = 85/187 (45.45%), Query Frame = 3 Query: 327 ESLDYEIVENELFKQDWRARRKVEIFQYVVFKWTLALLIGVLTGLAAVFCNFFVENIAGFKLLLINNLMLNDRHFMGFVANTSXXXXXXXXXXXXXXXXXXXXXGSGIPEVKAYLNGIDAHSILAPSTLFVKIFGSIFGVAAGFVVGKEGPMVHTGACIANLLGQGGSKKYHLTWRWLRYFKNDRDR 887 E LDY + N+ + + + V +W ++L +G+ G+ A F + V NI +K + ++ D F+ F+ GSGIPEVK YLNG L TL+ K + V++G G EGPM+H GA + N Q SK++ +LR F+ND+D+ Sbjct: 224 ECLDYVTIYNKAHRNELYKNFSKLASDHEVLRWIVSLFMGIFIGVIAYFSHACVSNITKYKFKFVEAVLELDL-FLAFLTYFLLNTLLATCSSLLAVYYEPTAAGSGIPEVKGYLNGTKIPHTLKMKTLWTKFLSMVLAVSSGLQAGSEGPMIHIGAIVGNGFSQAQSKEFGFKIPFLRSFRNDKDK 409
BLAST of FC877802 vs. ExPASy Swiss-Prot
Match: CLCN6_HUMAN (Chloride transport protein 6 OS=Homo sapiens GN=CLCN6 PE=1 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 1.051e-17 Identity = 68/223 (30.49%), Postives = 95/223 (42.60%), Query Frame = 3 Query: 276 TNTTSQIAIVGAN------ICP---IESLDYEIVENELFKQDWRARRKVEIFQYVVFKWTLALLIGVLTGLAAVFCNFFVENIAGFKLLLINN----------LMLNDRHFMGFVANTSXXXXXXXXXXXXXXXXXXXXXGSGIPEVKAYLNGIDAHSILAPSTLFVKIFGSIFGVAAGFVVGKEGPMVHTGACIANLLGQGGSKKYHLTWRWLRYFKNDRDR 887 T T ++ I+G I P ESLDY+ N+ + + + +Y KW + IGV TGL +F +FFV K ++ L L+ +GF GSGIPEVK YLNG+ I+ TL K+ G +F VA G VGKEGPM+H+G+ + L Q S YF++DRD+ Sbjct: 23 TRTPEELTILGETQEEEDEILPRKDYESLDYDRCINDPYLEVLETMDNKKGRRYEAVKWMVVFAIGVCTGLVGLFVDFFVRLFTQLKFGVVQTSVEECSQKGCLALSLLELLGF-------NLTFVFLASLLVLIEPVAAGSGIPEVKCYLNGVKVPGIVRLRTLLCKVLGVLFSVAGGLFVGKEGPMIHSGSVVGAGLPQFQSISLRKIQFNFPYFRSDRDK 238
BLAST of FC877802 vs. ExPASy Swiss-Prot
Match: CLCN6_MOUSE (Chloride transport protein 6 OS=Mus musculus GN=Clcn6 PE=1 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 3.057e-17 Identity = 61/197 (30.96%), Postives = 86/197 (43.65%), Query Frame = 3 Query: 327 ESLDYEIVENELFKQDWRARRKVEIFQYVVFKWTLALLIGVLTGLAAVFCNFFVENIAGFKLLLINN----------LMLNDRHFMGFVANTSXXXXXXXXXXXXXXXXXXXXXGSGIPEVKAYLNGIDAHSILAPSTLFVKIFGSIFGVAAGFVVGKEGPMVHTGACIANLLGQGGSKKYHLTWRWLRYFKNDRDR 887 ESLDY+ N+ + + + +Y KW + IGV TGL +F +F V K ++ L L+ +GF GSGIPE+K YLNG+ I+ TL K+FG +F V+ G VGKEGPM+H+GA + L Q S YF++DRD+ Sbjct: 49 ESLDYDRCINDPYLEVLETMDNKKGRRYEAVKWMVVFAIGVCTGLVGLFVDFSVRLFTQLKFGVVQTSVEECSQKGCLALSLLELLGF-------NLTFVFLASLLVLIEPVAAGSGIPEIKCYLNGVKVPGIVRLRTLLCKVFGVLFSVSGGLFVGKEGPMIHSGAVVGAGLPQFQSISLRKIQFNFPYFRSDRDK 238
BLAST of FC877802 vs. ExPASy Swiss-Prot
Match: CLCB_DICDI (Chloride channel protein B OS=Dictyostelium discoideum GN=clcB PE=3 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 4.415e-16 Identity = 56/190 (29.47%), Postives = 86/190 (45.26%), Query Frame = 3 Query: 327 ESLDYEIVENELFKQDWRARRKVEIFQYVVFKWTLALLIGVLTGLAAVFCNFFVENIAGFKLLLINNLMLNDRH-FMGFVANTSXXXXXXXXXXXXXXXXXXXXXGSGIPEVKAYLNGIDAHSILAPSTLFVKIFGSIFGVAAGFVVGKEGPMVHTGACIANLLGQGGSK--KYHLTWRWLRYFKNDRDR 887 ESLD+ ++N + ++ ++K + + KW + LIGV+ GL V+ + KL + + F+ F+ SG+PEVK YLNGI T+ K+ IF ++G V+G EGPM H GA I + + Q SK K+HL W+ F+ND D+ Sbjct: 68 ESLDFNAIDNIIHRKYTFEKKKYQKILKTLGKWVICTLIGVVVGLVCYCLKESVDQLQSLKLTQVKKFYSTESTIFIPFLVYLGFNLCYGLISGLLVCIFGPMSSSSGLPEVKGYLNGIRISKAFNLKTVLGKLVSLIFSFSSGLVLGPEGPMFHIGAGIGSSMSQFKSKTLKFHLKSFWI--FQNDSDK 255
BLAST of FC877802 vs. ExPASy Swiss-Prot
Match: CLCC_DICDI (Chloride channel protein C OS=Dictyostelium discoideum GN=clcC PE=3 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 1.570e-13 Identity = 48/188 (25.53%), Postives = 77/188 (40.96%), Query Frame = 3 Query: 324 IESLDYEIVENELFKQDWRARRKVEIFQYVVFKWTLALLIGVLTGLAAVFCNFFVENIAGFKLLLINNLMLNDRHFMGFVANTSXXXXXXXXXXXXXXXXXXXXXGSGIPEVKAYLNGIDAHSILAPSTLFVKIFGSIFGVAAGFVVGKEGPMVHTGACIANLLGQGGSKKYHLTWRWLRYFKNDRDR 887 I+SL++ + +N L ++++ K + KW + L +GV+ G A V+ + G K N+ + N F+ SGIPEVK LNG+ L L KI + ++G VG EGPM+H G+ + + Q S ++NDRD+ Sbjct: 63 IQSLNFSVNDNLLQREEYEKTTKGLHLKKTFGKWIICLFLGVIVGCIAYVIKMVVQLLQGLKFHYTNHYVSNGLQGEAFLTFLGINLLFVFLSCLMVIVAGPLASSSGIPEVKGILNGVKVREALGFRALLGKIVSLVLSFSSGLFVGPEGPMIHIGSAVGAAISQFKSSTMGFYPSLFLSYRNDRDK 250 The following BLAST results are available for this feature:
BLAST of FC877802 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 16
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Sequences
The
following sequences are available for this feature:
EST sequence >FC877802 ID=FC877802; Name=FC877802; organism=Citrus clementina; type=EST; length=887bpback to top |