FC877830

Overview
NameFC877830
Unique NameFC877830
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length920
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC877830 vs. ExPASy Swiss-Prot
Match: SRPK1_HUMAN (Serine/threonine-protein kinase SRPK1 OS=Homo sapiens GN=SRPK1 PE=1 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 1.760e-23
Identity = 63/193 (32.64%), Postives = 109/193 (56.48%), Query Frame = 3
Query:  336 KDGHYMFALGENLTSRYKIHSKMGEGTFGQVLECWDRERKEMVAIKIVRGIKKYREAAMIEIEVLQQLAKHDKGG-NRCVQIRNWFDYR------NHICIVFEKLGSSLYDFLRKNNYRSFPIDLVREIARQLLECIAFMHDLC-MIHTDLKPENVLL-VSSEYIK-----VPDYKSSSHTPKDSSYFKRMPK 872
            K G+++  +G+    RY +  K+G G F  V   WD + K+ VA+K+V+  + Y E A+ EI +L+ +   D    NR + ++   D++       HIC+VFE LG  L  ++ K+NY+  P+  V++I +Q+L+ + ++H  C +IHTD+KPEN+LL V+ +YI+       +++ S   P   S     P+
Sbjct:   64 KGGYHLVKIGDLFNGRYHVIRKLGWGHFSTVWLSWDIQGKKFVAMKVVKSAEHYTETALDEIRLLKSVRNSDPNDPNREMVVQLLDDFKISGVNGTHICMVFEVLGHHLLKWIIKSNYQGLPLPCVKKIIQQVLQGLDYLHTKCRIIHTDIKPENILLSVNEQYIRRLAAEATEWQRSGAPPPSGSAVSTAPQ 256          
BLAST of FC877830 vs. ExPASy Swiss-Prot
Match: SRPK2_MOUSE (Serine/threonine-protein kinase SRPK2 OS=Mus musculus GN=Srpk2 PE=1 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 3.920e-23
Identity = 61/197 (30.96%), Postives = 108/197 (54.82%), Query Frame = 3
Query:  336 KDGHYMFALGENLTSRYKIHSKMGEGTFGQVLECWDRERKEMVAIKIVRGIKKYREAAMIEIEVLQQLAKHDKGG-NRCVQIRNWFDYR------NHICIVFEKLGSSLYDFLRKNNYRSFPIDLVREIARQLLECIAFMHDLC-MIHTDLKPENVLL-VSSEYIK-----VPDYKSSSHTPKDSSYFKRMPKSSAI 884
            K G++   +G+    RY +  K+G G F  V  CWD + K  VA+K+V+  + Y E A+ EI++L+ + + D    N+ + ++   D++       H+C+VFE LG  L  ++ K+NY+  P+  V+ I RQ+L+ + ++H  C +IHTD+KPEN+L+ V   Y++       +++ +   P   S     P+   I
Sbjct:   63 KGGYHPVKIGDLFNGRYHVIRKLGWGHFSTVWLCWDMQGKRFVAMKVVKSAQHYTETALDEIKLLKCVRESDPSDPNKDMVVQLIDDFKISGMNGIHVCMVFEVLGHHLLKWIIKSNYQGLPVRCVKSIIRQVLQGLDYLHSKCKIIHTDIKPENILMCVDDAYVRRMAAEATEWQKAGAPPPSGSAVSTAPQQKPI 259          
BLAST of FC877830 vs. ExPASy Swiss-Prot
Match: SRPK2_HUMAN (Serine/threonine-protein kinase SRPK2 OS=Homo sapiens GN=SRPK2 PE=1 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 3.920e-23
Identity = 61/197 (30.96%), Postives = 108/197 (54.82%), Query Frame = 3
Query:  336 KDGHYMFALGENLTSRYKIHSKMGEGTFGQVLECWDRERKEMVAIKIVRGIKKYREAAMIEIEVLQQLAKHDKGG-NRCVQIRNWFDYR------NHICIVFEKLGSSLYDFLRKNNYRSFPIDLVREIARQLLECIAFMHDLC-MIHTDLKPENVLL-VSSEYIK-----VPDYKSSSHTPKDSSYFKRMPKSSAI 884
            K G++   +G+    RY +  K+G G F  V  CWD + K  VA+K+V+  + Y E A+ EI++L+ + + D    N+ + ++   D++       H+C+VFE LG  L  ++ K+NY+  P+  V+ I RQ+L+ + ++H  C +IHTD+KPEN+L+ V   Y++       +++ +   P   S     P+   I
Sbjct:   65 KGGYHPVKIGDLFNGRYHVIRKLGWGHFSTVWLCWDMQGKRFVAMKVVKSAQHYTETALDEIKLLKCVRESDPSDPNKDMVVQLIDDFKISGMNGIHVCMVFEVLGHHLLKWIIKSNYQGLPVRCVKSIIRQVLQGLDYLHSKCKIIHTDIKPENILMCVDDAYVRRMAAEATEWQKAGAPPPSGSAVSTAPQQKPI 261          
BLAST of FC877830 vs. ExPASy Swiss-Prot
Match: DSK1_SCHPO (Protein kinase dsk1 OS=Schizosaccharomyces pombe GN=dsk1 PE=2 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 3.920e-23
Identity = 66/196 (33.67%), Postives = 109/196 (55.61%), Query Frame = 3
Query:  342 GHYMFALGENLTSR-YKIHSKMGEGTFGQVLECWDRERKEMVAIKIVRGIKKYREAAMIEIEVLQQLAKHDK---GGNRCVQIRNWFDYRN----HICIVFEKLGSSLYDFLRKNNYRSFPIDLVREIARQLLECIAFMHDLC-MIHTDLKPENVLLV----SSEYIKVP-------DYKSSSHTPKDSSYFKRMP 869
            G++   +GE    R Y +  K+G G F  V   +DR  K  VA+K+VR  + YRE ++ EI +LQ++ + D+   G    + + ++F +R     H+C+VFE LG +L   ++   +R  P+ +V++IA QLL  + ++H  C +IHTDLKPENVL+     + ++I+ P          SSS T  ++ Y  + P
Sbjct:   66 GYHPVYIGEEFHHRRYVVERKLGWGHFSTVWLAYDRAAKRRVALKVVRSAEHYRETSIDEIRILQKIREGDEKHLGKKHIISLLDYFVHRGPNGAHVCMVFEVLGENLLSLIQSYGHRGVPVGIVKQIAYQLLIALDYLHRECGIIHTDLKPENVLICIDQDALQHIEAPATTSSPTSNTSSSKTRNNTGYTAKAP 261          
BLAST of FC877830 vs. ExPASy Swiss-Prot
Match: PRP4B_DICDI (Serine/threonine-protein kinase prpf4B OS=Dictyostelium discoideum GN=prpf4B PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 5.120e-23
Identity = 66/200 (33.00%), Postives = 110/200 (55.00%), Query Frame = 3
Query:  306 NGSPPWREDDKDGHYMFALGENLTSRYKIHSKMGEGTFGQVLECWDRERKEMVAIKIVRGIKKYREAAMIEIEVLQQLAKHDKGGNR---CVQIRNWFDYRNHICIVFEKLGSSLYDFLRK-NNYRSFPIDLVREIARQLLECIAFMHDLCMIHTDLKPENVLL-VSSEYIKVPDYKS------SSHTPKDSSYFKRMPK 872
            N S  W  DD DG+Y F +GE +  +Y+I S +G G F  V+   + +  E V IKI+R       + + EIE+LQ+++      N+   C+Q+++ F+YRNH+CIVFE +  SL+  ++K        ++ VR  A+QL   +  + +  ++H D+KP+N+++  +   IK+ D+ S      S  TP   S F R P+
Sbjct:  467 NLSDNW--DDADGYYKFRVGE-IMDKYQIFSPIGSGVFSTVVSAKETKTNEDVVIKIIRNRPSMHRSGLKEIEILQKISNTPTSSNQKSHCIQMKDHFNYRNHLCIVFEPMSMSLHQLIKKYGKDIGLSLNAVRVYAKQLFLALKHIKNSKILHADIKPDNIVVNEAKNTIKIVDFGSAGEIHESEITPYLVSRFYRAPE 663          
BLAST of FC877830 vs. ExPASy Swiss-Prot
Match: SRPK3_HUMAN (Serine/threonine-protein kinase SRPK3 OS=Homo sapiens GN=SRPK3 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 8.733e-23
Identity = 63/174 (36.21%), Postives = 98/174 (56.32%), Query Frame = 3
Query:  324 REDDKD----GHYMFALGENLTSRYKIHSKMGEGTFGQVLECWDRERKEMVAIKIVRGIKKYREAAMIEIEVLQQLAKHDKGGNR---CVQIRNWFDYRN----HICIVFEKLGSSLYDFLRKNNYRSFPIDLVREIARQLLECIAFMHDLC-MIHTDLKPENVLL-VSSEYIK 806
            +ED KD    G++   +G+    RY +  K+G G F  V  CWD +RK  VA+K+V+    Y E A+ EI++L+ +   D    +    VQ+ + F        H+C+V E LG  L  ++ K+NY+  P+  V+ I RQ+L  + ++H  C +IHTD+KPEN+LL V   YI+
Sbjct:   55 QEDPKDYCKGGYHPVKIGDVFNGRYHVVRKLGWGHFSTVWLCWDIQRKRFVALKVVKSAGHYTETAVDEIKLLKCVRDSDPSDPKRETIVQLIDDFRISGVNGVHVCMVLEVLGHQLLKWIIKSNYQGLPVPCVKSIVRQVLHGLDYLHTKCKIIHTDIKPENILLCVGDAYIR 228          
BLAST of FC877830 vs. ExPASy Swiss-Prot
Match: YAK1_ENCCU (Probable dual specificity protein kinase YAK1 homolog OS=Encephalitozoon cuniculi GN=YAK1 PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.541e-22
Identity = 64/180 (35.56%), Postives = 104/180 (57.78%), Query Frame = 3
Query:  360 LGENLTSRYKIHSKMGEGTFGQVLECWDRERKEMVAIKIVRGIKKYREAAMIEIEVLQQLAKHDKGGNRCVQIRNWFDYRNHICIVFEKLGSSLYDFLRKNNYRSFPIDLVREIARQLLECIAFMHDLCMIHTDLKPENVLLVSSE--YIKVPDYKSSSHTPKDSSYFKRMPKSSAIKVI 893
            L +N + +Y I   +G GTFGQV+ C   + +E VAIK+V+   KY    M E+ +L +L  ++   +R V I++ F Y+ H+CIV E LG +LY FL+   ++      +R I  Q+LE +  +  L +IH DLKPEN+L+   +   IK+ D+ S+  +P+ S ++ +     A +VI
Sbjct:   32 LAKNKSQKYMIIDMLGTGTFGQVVRCVGSDGEE-VAIKVVKNQPKYYNYEMNEVRILHKLL-YNNLNDRFVTIKDVFMYKQHLCIVEELLGRNLYTFLKMTRFKGLDHPTLRTILHQILEGMVQLSLLGIIHCDLKPENILIADYDTFKIKIIDFGSAVTSPQGSHFYVQSRYYRAPEVI 209          
BLAST of FC877830 vs. ExPASy Swiss-Prot
Match: YAK1_YEAST (Dual specificity protein kinase YAK1 OS=Saccharomyces cerevisiae GN=YAK1 PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 9.656e-22
Identity = 53/160 (33.12%), Postives = 98/160 (61.25%), Query Frame = 3
Query:  360 LGENLTSRYKIHSKMGEGTFGQVLECWDRERKEMVAIKIVRGIKKYREAAMIEIEVLQQLAKHDKGGNRCVQIRNW--FDYRNHICIVFEKLGSSLYDFLRKNNYRSFPIDLVREIARQLLECIAFMHDLCMIHTDLKPENVLLVSSE--YIKVPDYKSS 827
            LG     +Y +   +G+GTFGQV++C +   KE++A+K+V+   +Y   ++ E ++L+ L +     N+   +R +  F ++NH+C+VFE L ++LY+ L++N +    I L+R    Q+L+ +  + +  +IH DLKPEN+LL + +   +K+ D+ SS
Sbjct:  361 LGVEQNRKYLVLDILGQGTFGQVVKCQNLLTKEILAVKVVKSRTEYLTQSITEAKILELLNQKIDPTNKHHFLRMYDSFVHKNHLCLVFELLSNNLYELLKQNKFHGLSIQLIRTFTTQILDSLCVLKESKLIHCDLKPENILLCAPDKPELKIIDFGSS 520          
BLAST of FC877830 vs. ExPASy Swiss-Prot
Match: PRP4_SCHPO (Serine/threonine-protein kinase prp4 OS=Schizosaccharomyces pombe GN=prp4 PE=1 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 5.298e-20
Identity = 63/190 (33.16%), Postives = 99/190 (52.11%), Query Frame = 3
Query:  330 DDKDGHYMFALGENLTSRYKIHSKMGEGTFGQVLECWDRERKEMVAIKIVRGIKKYREAAMIEIEVLQQLAKHDKGGNR-CVQIRNWFDYRNHICIVFEKLGSSLYDFLRK-NNYRSFPIDLVREIARQLLECIAFMHDLCMIHTDLKPENVLLVSSEYI-KVPDYKSSSH------TPKDSSYFKRMPK 872
            DD +G+Y   L E L SRY + S +G+G F  V+   DR R +  AIKI+R  +   +  + E+ +L++L   D+ G +  +     F ++NH+C+VFE L  +L D L+K        I  VR  A Q+   +  +    +IH+D+KP+N+L+     I K+ D  S+S       TP   S F R P+
Sbjct:  141 DDIEGYYKVVLMEELDSRYIVQSNLGKGMFSTVVSALDRNRNQTFAIKIIRNNEVMYKEGLKEVSILERLQAADREGKQHIIHYERHFMHKNHLCMVFEMLSLNLRDILKKFGRNVGLSIKAVRLYAYQMFMALDLLKQCNVIHSDIKPDNMLVNEKRNILKICDLGSASDASENEITPYLVSRFYRAPE 330          
BLAST of FC877830 vs. ExPASy Swiss-Prot
Match: PRP4B_RAT (Serine/threonine-protein kinase PRP4 homolog OS=Rattus norvegicus GN=Prpf4b PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.434e-19
Identity = 62/200 (31.00%), Postives = 105/200 (52.50%), Query Frame = 3
Query:  333 DKDGHYMFALGENLTSRYKIHSKMGEGTFGQVLECWDRER-KEMVAIKIVRGIKKYREAAMIEIEVLQQLAKHDKGGN-RCVQIRNWFDYRNHICIVFEKLGSSLYDFLRK-NNYRSFPIDLVREIARQLLECIAFMHDLCMIHTDLKPENVLLVSSEYI-KVPDYKSSSH------TPKDSSYFKRMPKSSAIKVIDFG 902
            D +G+Y   +GE L  RY ++   G+G F  V+   D  R  + VA+KI+R  +  ++  + E+E L++L   D      C+++   F ++ H+C+VFE L  +L + L+K        I  VR  ++QL   +  +    ++H D+KP+N+L+  S+ I K+ D+ S+SH      TP   S F R P+    K  D+G
Sbjct:  670 DAEGYYRVNIGEVLDKRYNVYGYTGQGVFSNVVRARDNARANQEVAVKIIRNNELMQKTGLKELEFLKKLNDADPDDKFHCLRLFRHFYHKQHLCLVFEPLSMNLREVLKKYGKDVGLHIKAVRSYSQQLFLALKLLKRCNILHADIKPDNILVNESKTILKLCDFGSASHVADNDITPYLVSRFYRAPEIIIGKSYDYG 869          
The following BLAST results are available for this feature:
BLAST of FC877830 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 100
Match NameE-valueIdentityDescription
SRPK1_HUMAN1.760e-2332.64Serine/threonine-protein kinase SRPK1 OS=Homo sapi... [more]
SRPK2_MOUSE3.920e-2330.96Serine/threonine-protein kinase SRPK2 OS=Mus muscu... [more]
SRPK2_HUMAN3.920e-2330.96Serine/threonine-protein kinase SRPK2 OS=Homo sapi... [more]
DSK1_SCHPO3.920e-2333.67Protein kinase dsk1 OS=Schizosaccharomyces pombe G... [more]
PRP4B_DICDI5.120e-2333.00Serine/threonine-protein kinase prpf4B OS=Dictyost... [more]
SRPK3_HUMAN8.733e-2336.21Serine/threonine-protein kinase SRPK3 OS=Homo sapi... [more]
YAK1_ENCCU2.541e-2235.56Probable dual specificity protein kinase YAK1 homo... [more]
YAK1_YEAST9.656e-2233.13Dual specificity protein kinase YAK1 OS=Saccharomy... [more]
PRP4_SCHPO5.298e-2033.16Serine/threonine-protein kinase prp4 OS=Schizosacc... [more]
PRP4B_RAT3.434e-1931.00Serine/threonine-protein kinase PRP4 homolog OS=Ra... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA53BF04RM1 IVIA1 Citrus clementina cDNA clone IC0AAA53BF04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877830 ID=FC877830; Name=FC877830; organism=Citrus clementina; type=EST; length=920bp
AAAATTCATATCTTCGTTATTTTATTCGTTCGTTTCAATCGCATCAAGAT
CTCGATCTCTCTCTTATTTCCTCGCCGTGAGCTGCGATCATGGAGATGGA
GCGCGTGACGGAGTTTCCTTTTTCGAATCTGGATCGGCGTCCTCGTAAGC
GAGCGCGTTTGGGCTGGGACGTGCCTCAGGTACCGAAGGCTCAGGTAGGA
TTATTTTGTGGACAAGAGGTTGGGAATGTAACAAGCTTTGCACCTCCAAG
AGCTCCCTCAGACCATGTCACTAGTTCTTCTCTATTTGTAAAGGGAGTGG
CTCGAAATGGTTCTCCCCCATGGCGTGAGGATGACAAAGATGGCCATTAT
ATGTTTGCGCTTGGAGAAAATTTAACTTCTCGCTATAAGATTCACAGCAA
AATGGGTGAAGGAACCTTCGGTCAGGTTTTGGAATGCTGGGATCGTGAGA
GGAAAGAAATGGTAGCCATTAAAATTGTTCGTGGGATCAAGAAATATCGT
GAGGCTGCTATGATAGAAATTGAAGTACTTCAACAACTTGCAAAACATGA
TAAAGGTGGCAACCGTTGTGTGCAAATACGGAACTGGTTTGACTATCGTA
ACCATATCTGTATTGTGTTTGAGAAGCTTGGATCTAGCTTATACGATTTT
CTACGGAAAAACAATTATCGCTCATTTCCCATTGATCTTGTCCGTGAGAT
TGCCAGACAACTGTTGGAATGTATAGCATTTATGCATGATCTGTGTATGA
TACATACTGACTTAAAGCCTGAGAATGTTCTACTTGTTTCTTCTGAGTAT
ATTAAGGTTCCTGACTACAAGAGTTCTTCGCACACACCAAAAGATTCTTC
CTACTTTAAAAGAATGCCAAAGTCAAGTGCTATTAAGGTGATTGATTTTG
GCAGCACAACTTATGAGCGC
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