FC877830

Overview
NameFC877830
Unique NameFC877830
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length920
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC877830 vs. ExPASy Swiss-Prot
Match: PRP4B_PONAB (Serine/threonine-protein kinase PRP4 homolog OS=Pongo abelii GN=PRPF4B PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.434e-19
Identity = 62/200 (31.00%), Postives = 105/200 (52.50%), Query Frame = 3
Query:  333 DKDGHYMFALGENLTSRYKIHSKMGEGTFGQVLECWDRER-KEMVAIKIVRGIKKYREAAMIEIEVLQQLAKHDKGGN-RCVQIRNWFDYRNHICIVFEKLGSSLYDFLRK-NNYRSFPIDLVREIARQLLECIAFMHDLCMIHTDLKPENVLLVSSEYI-KVPDYKSSSH------TPKDSSYFKRMPKSSAIKVIDFG 902
            D +G+Y   +GE L  RY ++   G+G F  V+   D  R  + VA+KI+R  +  ++  + E+E L++L   D      C+++   F ++ H+C+VFE L  +L + L+K        I  VR  ++QL   +  +    ++H D+KP+N+L+  S+ I K+ D+ S+SH      TP   S F R P+    K  D+G
Sbjct:  670 DAEGYYRVNIGEVLDKRYNVYGYTGQGVFSNVVRARDNARASQEVAVKIIRNNELMQKTGLKELEFLKKLNDADPDDKFHCLRLFRHFYHKQHLCLVFEPLSMNLREVLKKYGKDVGLHIKAVRSYSQQLFLALKLLKRCNILHADIKPDNILVNESKTILKLCDFGSASHVADNDITPYLVSRFYRAPEIIIGKSYDYG 869          
BLAST of FC877830 vs. ExPASy Swiss-Prot
Match: PRP4B_MOUSE (Serine/threonine-protein kinase PRP4 homolog OS=Mus musculus GN=Prpf4b PE=1 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 3.434e-19
Identity = 62/200 (31.00%), Postives = 105/200 (52.50%), Query Frame = 3
Query:  333 DKDGHYMFALGENLTSRYKIHSKMGEGTFGQVLECWDRER-KEMVAIKIVRGIKKYREAAMIEIEVLQQLAKHDKGGN-RCVQIRNWFDYRNHICIVFEKLGSSLYDFLRK-NNYRSFPIDLVREIARQLLECIAFMHDLCMIHTDLKPENVLLVSSEYI-KVPDYKSSSH------TPKDSSYFKRMPKSSAIKVIDFG 902
            D +G+Y   +GE L  RY ++   G+G F  V+   D  R  + VA+KI+R  +  ++  + E+E L++L   D      C+++   F ++ H+C+VFE L  +L + L+K        I  VR  ++QL   +  +    ++H D+KP+N+L+  S+ I K+ D+ S+SH      TP   S F R P+    K  D+G
Sbjct:  670 DAEGYYRVNIGEVLDKRYNVYGYTGQGVFSNVVRARDNARANQEVAVKIIRNNELMQKTGLKELEFLKKLNDADPDDKFHCLRLFRHFYHKQHLCLVFEPLSMNLREVLKKYGKDVGLHIKAVRSYSQQLFLALKLLKRCNILHADIKPDNILVNESKTILKLCDFGSASHVADNDITPYLVSRFYRAPEIIIGKSYDYG 869          
BLAST of FC877830 vs. ExPASy Swiss-Prot
Match: PRP4B_HUMAN (Serine/threonine-protein kinase PRP4 homolog OS=Homo sapiens GN=PRPF4B PE=1 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 3.434e-19
Identity = 62/200 (31.00%), Postives = 105/200 (52.50%), Query Frame = 3
Query:  333 DKDGHYMFALGENLTSRYKIHSKMGEGTFGQVLECWDRER-KEMVAIKIVRGIKKYREAAMIEIEVLQQLAKHDKGGN-RCVQIRNWFDYRNHICIVFEKLGSSLYDFLRK-NNYRSFPIDLVREIARQLLECIAFMHDLCMIHTDLKPENVLLVSSEYI-KVPDYKSSSH------TPKDSSYFKRMPKSSAIKVIDFG 902
            D +G+Y   +GE L  RY ++   G+G F  V+   D  R  + VA+KI+R  +  ++  + E+E L++L   D      C+++   F ++ H+C+VFE L  +L + L+K        I  VR  ++QL   +  +    ++H D+KP+N+L+  S+ I K+ D+ S+SH      TP   S F R P+    K  D+G
Sbjct:  670 DAEGYYRVNIGEVLDKRYNVYGYTGQGVFSNVVRARDNARANQEVAVKIIRNNELMQKTGLKELEFLKKLNDADPDDKFHCLRLFRHFYHKQHLCLVFEPLSMNLREVLKKYGKDVGLHIKAVRSYSQQLFLALKLLKRCNILHADIKPDNILVNESKTILKLCDFGSASHVADNDITPYLVSRFYRAPEIIIGKSYDYG 869          
BLAST of FC877830 vs. ExPASy Swiss-Prot
Match: PRP4B_BOVIN (Serine/threonine-protein kinase PRP4 homolog OS=Bos taurus GN=PRPF4B PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.434e-19
Identity = 62/200 (31.00%), Postives = 105/200 (52.50%), Query Frame = 3
Query:  333 DKDGHYMFALGENLTSRYKIHSKMGEGTFGQVLECWDRER-KEMVAIKIVRGIKKYREAAMIEIEVLQQLAKHDKGGN-RCVQIRNWFDYRNHICIVFEKLGSSLYDFLRK-NNYRSFPIDLVREIARQLLECIAFMHDLCMIHTDLKPENVLLVSSEYI-KVPDYKSSSH------TPKDSSYFKRMPKSSAIKVIDFG 902
            D +G+Y   +GE L  RY ++   G+G F  V+   D  R  + VA+KI+R  +  ++  + E+E L++L   D      C+++   F ++ H+C+VFE L  +L + L+K        I  VR  ++QL   +  +    ++H D+KP+N+L+  S+ I K+ D+ S+SH      TP   S F R P+    K  D+G
Sbjct:  671 DAEGYYRVNIGEVLDKRYNVYGYTGQGVFSNVVRARDNARANQEVAVKIIRNNELMQKTGLKELEFLKKLNDADPDDKFHCLRLFRHFYHKQHLCLVFEPLSMNLREVLKKYGKDVGLHIKAVRSYSQQLFLALKLLKRCNILHADIKPDNILVNESKTILKLCDFGSASHVADNDITPYLVSRFYRAPEIIIGKSYDYG 870          
BLAST of FC877830 vs. ExPASy Swiss-Prot
Match: SKY1_YEAST (Serine/threonine-protein kinase SKY1 OS=Saccharomyces cerevisiae GN=SKY1 PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.226e-18
Identity = 65/199 (32.66%), Postives = 107/199 (53.77%), Query Frame = 3
Query:  225 NVTSFAPPRAPSDHVTSSSLFVKGVARNGSPPWREDDKDGHYMFALGENLT-SRYKIHSKMGEGTFGQVLECWDRERKEMVAIKIVRGIKKYREAAMIEIEVLQQLAKHDK------GGNRCVQIRNWFDYRN----HICIVFEKLGSSLYDFLRKNNYRSFPIDLVREIARQLLECIAFMHDLC-MIHTDLKPENVLL 785
            ++ S + P++ SD  + SS  +           ++    G++    GE    +RY +  K+G G F  V    D      VA+KIVRG K Y EAA  EI++LQ++   D       G N  +++ + F+++     H+ +VFE LG +L   ++K  +R  P+  V++I++QLL  + +MH  C +IHTD+KPENVL+
Sbjct:  106 SIQSDSGPQSDSDLDSDSS--ISSCDERNEESLKDYRPGGYHPAFKGEPYKDARYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGDKVYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFNHKGPNGVHVVMVFEVLGENLLALIKKYEHRGIPLIYVKQISKQLLLGLDYMHRRCGIIHTDIKPENVLM 302          
BLAST of FC877830 vs. ExPASy Swiss-Prot
Match: SKY1_DICDI (Probable serine/threonine-protein kinase sky1 OS=Dictyostelium discoideum GN=sky1 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.907e-18
Identity = 66/198 (33.33%), Postives = 100/198 (50.51%), Query Frame = 3
Query:  312 SPPWREDDKDGHYMFALGENLTSRYKIHSKM---GEGTFGQVLECWDRERKEMVAIKIVRGIKKYREAAMIEIEVLQQLAKHDKGGNRCVQIRNWFDYRN----HICIVFEKLGSSLYDFLRKNNYRSFPIDLVREIARQLLECIAFMHDLC-MIHTDLKPENVLLVSS-EYIKVPDYKSSSHTPKDSSYFKRMPKSS 878
            S  W  +DKD     +   + T+     S     G G  G V+        + VA+KIVR  + Y E A  EI++L  ++K++       ++ + F +R     H C+VFE LG++L D ++ + YR  PI LV+ + +Q L  + ++H  C +IHTDLKPENVLL  S ++    DY  S    +   YFK    SS
Sbjct:  147 STVWLCNDKDTPITTSSSSSSTTTTTTSSSSNGNGNGNGGNVIGY------KQVALKIVRSARTYSETAEDEIKILNAISKYNAQDKCVARLLDHFTHRGPNGRHYCMVFELLGNNLLDLIKHHRYRGMPITLVKTLMKQTLIALDYIHTKCKIIHTDLKPENVLLEKSFDFFTSNDYIWS----EKYGYFKNRTSSS 334          
BLAST of FC877830 vs. ExPASy Swiss-Prot
Match: HIPK4_MACFA (Homeodomain-interacting protein kinase 4 OS=Macaca fascicularis GN=HIPK4 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 5.483e-17
Identity = 52/162 (32.10%), Postives = 86/162 (53.09%), Query Frame = 3
Query:  357 ALGENLTSRYKIHSKMGEGTFGQVLECWDRERKEMVAIKIVRGIKKYREAAMIEIEVLQQLAKHDKGGNRCVQIRNWFDYRNHICIVFEKLGSSLYDFLRKNNYRSFPIDLVREIARQLLECIAFMHDLCMIHTDLKPENVLLVSSE----YIKVPDYKSSS 830
            A  ++ T  Y I   +G+GTFG+V + W R   EMVAIKI++           E+++L  +   D      ++   +F       +VFE L  +L++F ++NN+   P   +R +  Q+L  +A + +L +IH DLKPEN++LV        +KV D+ S+S
Sbjct:    2 ATTQSETDCYDIIEVLGKGTFGEVAKGWRRSTGEMVAIKILKNDAYRNRIIKNELKLLHCMRGLDPEEAHVIRFLEFFHDALKFYLVFELLEQNLFEFQKENNFAPLPARHIRTVTLQVLRALARLKELAIIHADLKPENIMLVDQTRCPFRVKVIDFGSAS 163          
BLAST of FC877830 vs. ExPASy Swiss-Prot
Match: HIPK4_RAT (Homeodomain-interacting protein kinase 4 OS=Rattus norvegicus GN=Hipk4 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 7.161e-17
Identity = 51/156 (32.69%), Postives = 84/156 (53.85%), Query Frame = 3
Query:  375 TSRYKIHSKMGEGTFGQVLECWDRERKEMVAIKIVRGIKKYREAAMIEIEVLQQLAKHDKGGNRCVQIRNWFDYRNHICIVFEKLGSSLYDFLRKNNYRSFPIDLVREIARQLLECIAFMHDLCMIHTDLKPENVLLVSSE----YIKVPDYKSSS 830
            T  Y I   +G+GTFG+V + W R   EMVAIKI++           E+++L+ +   D      ++   +F       +VFE L  +L++F ++NN+   P   +R +  Q+L  +A + +L +IH DLKPEN++LV        +KV D+ S+S
Sbjct:    8 TDCYDIIEVLGKGTFGEVAKGWRRSTGEMVAIKILKNDAYRSRIIKNELKLLRCVRGLDPDEAHVIRFLEFFHDALKFYLVFELLEQNLFEFQKENNFAPLPARHIRTVTLQVLRALARLKELAIIHADLKPENIMLVDQTRCPFRVKVIDFGSAS 163          
BLAST of FC877830 vs. ExPASy Swiss-Prot
Match: HIPK4_MOUSE (Homeodomain-interacting protein kinase 4 OS=Mus musculus GN=Hipk4 PE=1 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 7.161e-17
Identity = 51/156 (32.69%), Postives = 84/156 (53.85%), Query Frame = 3
Query:  375 TSRYKIHSKMGEGTFGQVLECWDRERKEMVAIKIVRGIKKYREAAMIEIEVLQQLAKHDKGGNRCVQIRNWFDYRNHICIVFEKLGSSLYDFLRKNNYRSFPIDLVREIARQLLECIAFMHDLCMIHTDLKPENVLLVSSE----YIKVPDYKSSS 830
            T  Y I   +G+GTFG+V + W R   EMVAIKI++           E+++L+ +   D      ++   +F       +VFE L  +L++F ++NN+   P   +R +  Q+L  +A + +L +IH DLKPEN++LV        +KV D+ S+S
Sbjct:    8 TDCYDIIEVLGKGTFGEVAKGWRRSTGEMVAIKILKNDAYRSRIIKNELKLLRCVRGLDPDEAHVIRFLEFFHDALKFYLVFELLEQNLFEFQKENNFAPLPARHIRTVTLQVLRALARLKELAIIHADLKPENIMLVDQTRCPFRVKVIDFGSAS 163          
BLAST of FC877830 vs. ExPASy Swiss-Prot
Match: HIPK4_HUMAN (Homeodomain-interacting protein kinase 4 OS=Homo sapiens GN=HIPK4 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 9.352e-17
Identity = 51/156 (32.69%), Postives = 83/156 (53.21%), Query Frame = 3
Query:  375 TSRYKIHSKMGEGTFGQVLECWDRERKEMVAIKIVRGIKKYREAAMIEIEVLQQLAKHDKGGNRCVQIRNWFDYRNHICIVFEKLGSSLYDFLRKNNYRSFPIDLVREIARQLLECIAFMHDLCMIHTDLKPENVLLVSSE----YIKVPDYKSSS 830
            T  Y I   +G+GTFG+V + W R   EMVAIKI++           E+++L  +   D      ++   +F       +VFE L  +L++F ++NN+   P   +R +  Q+L  +A + +L +IH DLKPEN++LV        +KV D+ S+S
Sbjct:    8 TDCYDIIEVLGKGTFGEVAKGWRRSTGEMVAIKILKNDAYRNRIIKNELKLLHCMRGLDPEEAHVIRFLEFFHDALKFYLVFELLEQNLFEFQKENNFAPLPARHIRTVTLQVLTALARLKELAIIHADLKPENIMLVDQTRCPFRVKVIDFGSAS 163          
The following BLAST results are available for this feature:
BLAST of FC877830 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 100
Match NameE-valueIdentityDescription
PRP4B_PONAB3.434e-1931.00Serine/threonine-protein kinase PRP4 homolog OS=Po... [more]
PRP4B_MOUSE3.434e-1931.00Serine/threonine-protein kinase PRP4 homolog OS=Mu... [more]
PRP4B_HUMAN3.434e-1931.00Serine/threonine-protein kinase PRP4 homolog OS=Ho... [more]
PRP4B_BOVIN3.434e-1931.00Serine/threonine-protein kinase PRP4 homolog OS=Bo... [more]
SKY1_YEAST2.226e-1832.66Serine/threonine-protein kinase SKY1 OS=Saccharomy... [more]
SKY1_DICDI2.907e-1833.33Probable serine/threonine-protein kinase sky1 OS=D... [more]
HIPK4_MACFA5.483e-1732.10Homeodomain-interacting protein kinase 4 OS=Macaca... [more]
HIPK4_RAT7.161e-1732.69Homeodomain-interacting protein kinase 4 OS=Rattus... [more]
HIPK4_MOUSE7.161e-1732.69Homeodomain-interacting protein kinase 4 OS=Mus mu... [more]
HIPK4_HUMAN9.352e-1732.69Homeodomain-interacting protein kinase 4 OS=Homo s... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA53BF04RM1 IVIA1 Citrus clementina cDNA clone IC0AAA53BF04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877830 ID=FC877830; Name=FC877830; organism=Citrus clementina; type=EST; length=920bp
AAAATTCATATCTTCGTTATTTTATTCGTTCGTTTCAATCGCATCAAGAT
CTCGATCTCTCTCTTATTTCCTCGCCGTGAGCTGCGATCATGGAGATGGA
GCGCGTGACGGAGTTTCCTTTTTCGAATCTGGATCGGCGTCCTCGTAAGC
GAGCGCGTTTGGGCTGGGACGTGCCTCAGGTACCGAAGGCTCAGGTAGGA
TTATTTTGTGGACAAGAGGTTGGGAATGTAACAAGCTTTGCACCTCCAAG
AGCTCCCTCAGACCATGTCACTAGTTCTTCTCTATTTGTAAAGGGAGTGG
CTCGAAATGGTTCTCCCCCATGGCGTGAGGATGACAAAGATGGCCATTAT
ATGTTTGCGCTTGGAGAAAATTTAACTTCTCGCTATAAGATTCACAGCAA
AATGGGTGAAGGAACCTTCGGTCAGGTTTTGGAATGCTGGGATCGTGAGA
GGAAAGAAATGGTAGCCATTAAAATTGTTCGTGGGATCAAGAAATATCGT
GAGGCTGCTATGATAGAAATTGAAGTACTTCAACAACTTGCAAAACATGA
TAAAGGTGGCAACCGTTGTGTGCAAATACGGAACTGGTTTGACTATCGTA
ACCATATCTGTATTGTGTTTGAGAAGCTTGGATCTAGCTTATACGATTTT
CTACGGAAAAACAATTATCGCTCATTTCCCATTGATCTTGTCCGTGAGAT
TGCCAGACAACTGTTGGAATGTATAGCATTTATGCATGATCTGTGTATGA
TACATACTGACTTAAAGCCTGAGAATGTTCTACTTGTTTCTTCTGAGTAT
ATTAAGGTTCCTGACTACAAGAGTTCTTCGCACACACCAAAAGATTCTTC
CTACTTTAAAAGAATGCCAAAGTCAAGTGCTATTAAGGTGATTGATTTTG
GCAGCACAACTTATGAGCGC
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