FC877830

Overview
NameFC877830
Unique NameFC877830
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length920
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC877830 vs. ExPASy Swiss-Prot
Match: CDK4_BOVIN (Cell division protein kinase 4 OS=Bos taurus GN=CDK4 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.545e-11
Identity = 45/159 (28.30%), Postives = 76/159 (47.80%), Query Frame = 3
Query:  375 TSRYKIHSKMGEGTFGQVLECWDRERKEMVAIKIVR-----------GIKKYREAAMIEIEVLQQLAKHDKGGNRCVQIRNWFDYRNHICIVFEKLGSSLYDFLRKNNYRSFPIDLVREIARQLLECIAFMHDLCMIHTDLKPENVLLVSSEYIKVPDY 818
            TSRY+  +++G G +G V +  D      VA+K VR            I   RE A++      +     +  + C   R   D    + +VFE +   L  +L K      P++ ++++ RQ L  + F+H  C++H DLKPEN+L+ S   +K+ D+
Sbjct:    3 TSRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGGGAGGGLPISTVREVALLRRLEAFEHPNVVRLMDVCATART--DRETKVTLVFEHVDQDLRTYLDKAPPPGLPVETIKDLMRQFLRGLDFLHANCIVHRDLKPENILVTSGGTVKLADF 159          
BLAST of FC877830 vs. ExPASy Swiss-Prot
Match: Y8078_DICDI (Probable serine/threonine-protein kinase DDB_G0268078 OS=Dictyostelium discoideum GN=DDB_G0268078 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.018e-11
Identity = 47/148 (31.76%), Postives = 84/148 (56.76%), Query Frame = 3
Query:  381 RYKIHSKMGEGTFGQVLECWDRERKEMVAIK-IVRGIKKYREAAMI-EIEVLQQLAKHDKGGNRCVQIRNWFDYRNHICIVFEKLGSSLYDFLRKNNYRSFPIDLVREIARQLLECIAFMHDLCMIHTDLKPENVLLVSSEYIKVPDY 818
            +Y+   ++G+G +G V++  D +  E+VAIK + +    ++E   + EI+ L++L KH       V++      R+ +  VFE L ++LY+ + K+  +  P   +R I  Q+L+ + FMH     H DLKPEN++LV  E +K+ D+
Sbjct:    3 KYQFIKQVGDGAYGDVIKAIDVKTGEIVAIKRMKKKFSDWKECIQLREIKALKKL-KHPN----IVKLLEIILERDELFFVFEYLENNLYESI-KDRTKLLPETTIRNIIYQILQALHFMHTNGFFHRDLKPENIMLV-GERLKIADF 143          
BLAST of FC877830 vs. ExPASy Swiss-Prot
Match: CDKL5_MOUSE (Cyclin-dependent kinase-like 5 OS=Mus musculus GN=Cdkl5 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.018e-11
Identity = 41/153 (26.80%), Postives = 87/153 (56.86%), Query Frame = 3
Query:  369 NLTSRYKIHSKMGEGTFGQVLECWDRERKEMVAIKIVRGI---KKYREAAMIEIEVLQQLAKHDKGGNRCVQIRNWFDYRNHICIVFEKLGSSLYDFLRKNNYRSFPIDLVREIARQLLECIAFMHDLCMIHTDLKPENVLLVSSEYIKVPDY 818
            N+ ++++I   +GEG +G VL+C  +E  E+VAIK  +     ++ +E  + E+++L+ L + +      V+++  F  R  + +VFE +  ++ + L +      P + V+    QL++ I + H   ++H D+KPEN+L+  ++ +K+ D+
Sbjct:    8 NVMNKFEILGVVGEGAYGVVLKCRHKETHEIVAIKKFKDSEENEEVKETTLRELKMLRTLKQEN-----IVELKEAFRRRGKLYLVFEYVEKNMLELLEEMP-NGVPPEKVKSYIYQLIKAIHWCHKNDIVHRDIKPENLLISHNDVLKLCDF 154          
BLAST of FC877830 vs. ExPASy Swiss-Prot
Match: CDKL5_HUMAN (Cyclin-dependent kinase-like 5 OS=Homo sapiens GN=CDKL5 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.018e-11
Identity = 41/153 (26.80%), Postives = 87/153 (56.86%), Query Frame = 3
Query:  369 NLTSRYKIHSKMGEGTFGQVLECWDRERKEMVAIKIVRGI---KKYREAAMIEIEVLQQLAKHDKGGNRCVQIRNWFDYRNHICIVFEKLGSSLYDFLRKNNYRSFPIDLVREIARQLLECIAFMHDLCMIHTDLKPENVLLVSSEYIKVPDY 818
            N+ ++++I   +GEG +G VL+C  +E  E+VAIK  +     ++ +E  + E+++L+ L + +      V+++  F  R  + +VFE +  ++ + L +      P + V+    QL++ I + H   ++H D+KPEN+L+  ++ +K+ D+
Sbjct:    8 NVMNKFEILGVVGEGAYGVVLKCRHKETHEIVAIKKFKDSEENEEVKETTLRELKMLRTLKQEN-----IVELKEAFRRRGKLYLVFEYVEKNMLELLEEMP-NGVPPEKVKSYIYQLIKAIHWCHKNDIVHRDIKPENLLISHNDVLKLCDF 154          
BLAST of FC877830 vs. ExPASy Swiss-Prot
Match: CDKD1_ORYSJ (Cyclin-dependent kinase D-1 OS=Oryza sativa subsp. japonica GN=CDKD-1 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.018e-11
Identity = 44/155 (28.39%), Postives = 84/155 (54.19%), Query Frame = 3
Query:  366 ENLTSRYKIHSKMGEGTFGQVLECWDRERKEMVAIKIVRGIKKYREA----AMIEIEVLQQLAKHDKGGNRCVQIRNWFDYRNHICIVFEKLGSSLYDFLRKNNYRSFPIDLVREIARQLLECIAFMHDLCMIHTDLKPENVLLVSSEYIKVPDY 818
            + +  RY     +GEGT+G V +  D +    VAIK +R + KY+E     A+ EI++L++L       +  +++ + F Y+ ++ +VFE + + L   +R  N    P D  +   + +L+ +AF H   ++H D+KP N+L+ +   +K+ D+
Sbjct:   13 KRVADRYLKREVLGEGTYGVVFKAVDTKTGNTVAIKKIR-LGKYKEGVNFTALREIKLLKELKD-----SNIIELIDAFPYKGNLHLVFEFMETDLEAVIRDRNIVLSPAD-TKSYIQMMLKGLAFCHKKWVLHRDMKPNNLLIGADGQLKLADF 160          
BLAST of FC877830 vs. ExPASy Swiss-Prot
Match: CDKD1_ORYSI (Cyclin-dependent kinase D-1 OS=Oryza sativa subsp. indica GN=CDKD-1 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.636e-11
Identity = 44/155 (28.39%), Postives = 84/155 (54.19%), Query Frame = 3
Query:  366 ENLTSRYKIHSKMGEGTFGQVLECWDRERKEMVAIKIVRGIKKYREA----AMIEIEVLQQLAKHDKGGNRCVQIRNWFDYRNHICIVFEKLGSSLYDFLRKNNYRSFPIDLVREIARQLLECIAFMHDLCMIHTDLKPENVLLVSSEYIKVPDY 818
            + +  RY     +GEGT+G V +  D +    VAIK +R + KY+E     A+ EI++L++L       +  +++ + F Y+ ++ +VFE + + L   +R  N    P D  +   + +L+ +AF H   ++H D+KP N+L+ +   +K+ D+
Sbjct:   13 KRVADRYLKREVLGEGTYGVVFKADDTKTGNTVAIKKIR-LGKYKEGVNFTALREIKLLKELKD-----SNIIELIDAFPYKGNLHLVFEFMETDLEAVIRDRNIVLSPAD-TKSYIQMMLKGLAFCHKKWVLHRDMKPNNLLIGADGQLKLADF 160          
BLAST of FC877830 vs. ExPASy Swiss-Prot
Match: MYLK2_RAT (Myosin light chain kinase 2, skeletal/cardiac muscle OS=Rattus norvegicus GN=Mylk2 PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 4.496e-11
Identity = 45/156 (28.85%), Postives = 86/156 (55.13%), Query Frame = 3
Query:  369 NLTSRYKIHSK--MGEGTFGQVLECWDRERKEMVAIKIVRG-IKKYREAAMIEIEVLQQLAKHDKGGNRCVQIRNWFDYRNHICIVFEKL-GSSLYDFLRKNNYRSFPIDLVREIARQLLECIAFMHDLCMIHTDLKPENVLLVSS--EYIKVPDY 818
            N++S + ++SK  +G G FG V  C +R     +A K+++    K +E  ++EIEV+ QL   +      +Q+ +  +  + I +  E + G  L++ +   +Y+   +D +    RQ+ + I FMH + ++H DLKPEN+L V++    +K+ D+
Sbjct:  292 NVSSEFSMNSKEALGGGKFGAVCTCTERSTGLKLAAKVIKKQTPKDKEMVLLEIEVMNQLNHRN-----LIQLYSAIETSHEIILFMEYIEGGELFERIVDEDYQLTEVDTM-VFVRQICDGILFMHKMRVLHLDLKPENILCVNTTGHLVKIIDF 441          
BLAST of FC877830 vs. ExPASy Swiss-Prot
Match: CDK4_XENLA (Cell division protein kinase 4 OS=Xenopus laevis GN=cdk4 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.496e-11
Identity = 42/161 (26.09%), Postives = 82/161 (50.93%), Query Frame = 3
Query:  360 LGENLTSRYKIHSKMGEGTFGQVLECWDRERKEMVAIKIVRGIKKYRE---AAMIEIEVLQQLAKHD-----KGGNRCVQIRNWFDYRNHICIVFEKLGSSLYDFLRKNNYRSFPIDLVREIARQLLECIAFMHDLCMIHTDLKPENVLLVSSEYIKVPDY 818
            + + +  +Y+  +++G G +G V +  D +  + VA+K VR          + + E+ +L++L   D     K  + C   R   D    + +VFE +   L  +L K      P++ ++++ +Q L  + F+H  C++H DLKPEN+L+ S   +K+ D+
Sbjct:    1 MSKEMKGQYEPVAEIGVGAYGTVYKARDLQSGKFVALKNVRVQTNENGLPLSTVREVTLLKRLEHFDHPNIVKLMDVCASART--DRETKVTLVFEHVDQDLKTYLSKVPPPGLPLETIKDLMKQFLSGLEFLHLNCIVHRDLKPENILVTSGGQVKLADF 159          
BLAST of FC877830 vs. ExPASy Swiss-Prot
Match: CDK2_ENTHI (Cell division protein kinase 2 homolog OS=Entamoeba histolytica GN=CDC2 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.872e-11
Identity = 45/152 (29.61%), Postives = 81/152 (53.29%), Query Frame = 3
Query:  378 SRYKIHSKMGEGTFGQVLECWDRERKEMVAIKIVRGIKKYREAAMIEIEVLQQLA-----KHDKGGNRCVQIRNWFDYRNHICIVFEKLGSSLYDFLRKNNYRSFPIDLVREIARQLLECIAFMHDLCMIHTDLKPENVLLVSSEYIKVPDY 818
            +RY+   ++GEGT+G V + WD      VA+K    IK+ RE   I +  ++++A     KH       V + + +     + +VFE     LY F+ +++    PI+  R I  Q+L+ +AF H   ++H D+KP+N+L+  +  IK+ ++
Sbjct:    2 TRYEKKQQLGEGTYGVVCKAWDTVCNRYVALK---KIKQEREDDGIPVTSVREIAVLLELKHPN----VVDLYDIYLEDKFLYLVFEFCDEDLYQFMSRSS--KIPINETRSIVYQILQGLAFCHYHQILHRDMKPQNILINKNGTIKLGEF 144          
BLAST of FC877830 vs. ExPASy Swiss-Prot
Match: CDK4_RAT (Cell division protein kinase 4 OS=Rattus norvegicus GN=Cdk4 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.668e-11
Identity = 43/159 (27.04%), Postives = 78/159 (49.06%), Query Frame = 3
Query:  375 TSRYKIHSKMGEGTFGQVLECWDRERKEMVAIKIVR-----------GIKKYREAAMIEIEVLQQLAKHDKGGNRCVQIRNWFDYRNHICIVFEKLGSSLYDFLRKNNYRSFPIDLVREIARQLLECIAFMHDLCMIHTDLKPENVLLVSSEYIKVPDY 818
            T+RY+  +++G G +G V +  D      VA+K VR            +   RE A++      +     +  + C   R   D +  + +VFE +   L  +L K      P++ ++++ RQ L  + F+H  C++H DLKPEN+L+ S+  +K+ D+
Sbjct:    3 TTRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGGAAGGGLPVSTVREVALLRRLEAFEHPNVVRLMDVCATSRTDRDIK--VTLVFEHIDQDLRTYLDKAPPPGLPVETIKDLMRQFLSGLDFLHANCIVHRDLKPENILVTSNGTVKLADF 159          
The following BLAST results are available for this feature:
BLAST of FC877830 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 100
Match NameE-valueIdentityDescription
CDK4_BOVIN1.545e-1128.30Cell division protein kinase 4 OS=Bos taurus GN=CD... [more]
Y8078_DICDI2.018e-1131.76Probable serine/threonine-protein kinase DDB_G0268... [more]
CDKL5_MOUSE2.018e-1126.80Cyclin-dependent kinase-like 5 OS=Mus musculus GN=... [more]
CDKL5_HUMAN2.018e-1126.80Cyclin-dependent kinase-like 5 OS=Homo sapiens GN=... [more]
CDKD1_ORYSJ2.018e-1128.39Cyclin-dependent kinase D-1 OS=Oryza sativa subsp.... [more]
CDKD1_ORYSI2.636e-1128.39Cyclin-dependent kinase D-1 OS=Oryza sativa subsp.... [more]
MYLK2_RAT4.496e-1128.85Myosin light chain kinase 2, skeletal/cardiac musc... [more]
CDK4_XENLA4.496e-1126.09Cell division protein kinase 4 OS=Xenopus laevis G... [more]
CDK2_ENTHI5.872e-1129.61Cell division protein kinase 2 homolog OS=Entamoeb... [more]
CDK4_RAT7.668e-1127.04Cell division protein kinase 4 OS=Rattus norvegicu... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA53BF04RM1 IVIA1 Citrus clementina cDNA clone IC0AAA53BF04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877830 ID=FC877830; Name=FC877830; organism=Citrus clementina; type=EST; length=920bp
AAAATTCATATCTTCGTTATTTTATTCGTTCGTTTCAATCGCATCAAGAT
CTCGATCTCTCTCTTATTTCCTCGCCGTGAGCTGCGATCATGGAGATGGA
GCGCGTGACGGAGTTTCCTTTTTCGAATCTGGATCGGCGTCCTCGTAAGC
GAGCGCGTTTGGGCTGGGACGTGCCTCAGGTACCGAAGGCTCAGGTAGGA
TTATTTTGTGGACAAGAGGTTGGGAATGTAACAAGCTTTGCACCTCCAAG
AGCTCCCTCAGACCATGTCACTAGTTCTTCTCTATTTGTAAAGGGAGTGG
CTCGAAATGGTTCTCCCCCATGGCGTGAGGATGACAAAGATGGCCATTAT
ATGTTTGCGCTTGGAGAAAATTTAACTTCTCGCTATAAGATTCACAGCAA
AATGGGTGAAGGAACCTTCGGTCAGGTTTTGGAATGCTGGGATCGTGAGA
GGAAAGAAATGGTAGCCATTAAAATTGTTCGTGGGATCAAGAAATATCGT
GAGGCTGCTATGATAGAAATTGAAGTACTTCAACAACTTGCAAAACATGA
TAAAGGTGGCAACCGTTGTGTGCAAATACGGAACTGGTTTGACTATCGTA
ACCATATCTGTATTGTGTTTGAGAAGCTTGGATCTAGCTTATACGATTTT
CTACGGAAAAACAATTATCGCTCATTTCCCATTGATCTTGTCCGTGAGAT
TGCCAGACAACTGTTGGAATGTATAGCATTTATGCATGATCTGTGTATGA
TACATACTGACTTAAAGCCTGAGAATGTTCTACTTGTTTCTTCTGAGTAT
ATTAAGGTTCCTGACTACAAGAGTTCTTCGCACACACCAAAAGATTCTTC
CTACTTTAAAAGAATGCCAAAGTCAAGTGCTATTAAGGTGATTGATTTTG
GCAGCACAACTTATGAGCGC
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