FC877834

Overview
NameFC877834
Unique NameFC877834
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length923
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC877834 vs. ExPASy Swiss-Prot
Match: AB22G_ARATH (ABC transporter G family member 22 OS=Arabidopsis thaliana GN=ABCG22 PE=1 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 2.157e-29
Identity = 81/219 (36.99%), Postives = 120/219 (54.79%), Query Frame = 1
Query:  265 PNYPLLLSFNNLSYSVKVGQKLLPDLPFFGSQXXXXXXXXXXXXISGVAREGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSKLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHXXXXXXXXXXXXXXXDIIHDPILLFLDEPISGLDFTSAFNVVKVLKQIAKSGSIVI 921
            P  P+ L F +++Y V + +KL   +                  ISG    GE+ A++G SGS KTTL+  +AGRIS+    G+VT N +   SK LK    +V QDD+L+  LT++ETL ++A  RLP++L++E+K++R   +I +LGL     T+IG                   +II +P LL LDEP SGLD T+A   + +L  IA++G  VI
Sbjct:  151 PTLPIFLKFRDVTYKVVI-KKLTSSVE-----------KEILTGISGSVNPGEVLALMGPSGSGKTTLLSLLAGRISQSSTGGSVTYNDKPY-SKYLKSKIGFVTQDDVLFPHLTVKETLTYAARLRLPKTLTREQKKQRALDVIQELGLERCQDTMIGGAFVRGVSGGERKRVSIGNEIIINPSLLLLDEPTSGLDSTTALRTILMLHDIAEAGKTVI 356          
BLAST of FC877834 vs. ExPASy Swiss-Prot
Match: AB14G_ARATH (ABC transporter G family member 14 OS=Arabidopsis thaliana GN=ABCG14 PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 2.385e-28
Identity = 83/242 (34.30%), Postives = 123/242 (50.83%), Query Frame = 1
Query:  196 INDYSSVISIDMPYSNGSSSNELPNYPLLLSFNNLSYSVKVGQKLLPDLPFFGSQXXXXXXXXXXXXISGVAREGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSKLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHXXXXXXXXXXXXXXXDIIHDPILLFLDEPISGLDFTSAFNVVKVLKQIAKSGSIVI 921
            ++D  S   +  P        ++  YP+ L F  + Y VK+ Q         GS             I+G+   GE  A+LG SGS KTTL+ A+ GR+SK    G V  NG+   S  +K  + +V QDD+LY  LT+ ETL F+A  RLP SL++++K + VD +I +LGL     ++IG                   +++ +P LL LDEP SGLD T+A  +V  +K++A  G  V+
Sbjct:   24 MSDTQSKSVLAFPTITSQPGLQMSMYPITLKFEEVVYKVKIEQTS----QCMGS--WKSKEKTILNGITGMVCPGEFLAMLGPSGSGKTTLLSALGGRLSKT-FSGKVMYNGQPF-SGCIKRRTGFVAQDDVLYPHLTVWETLFFTALLRLPSSLTRDEKAEHVDRVIAELGLNRCTNSMIGGPLFRGISGGEKKRVSIGQEMLINPSLLLLDEPTSGLDSTTAHRIVTTIKRLASGGRTVV 257          
BLAST of FC877834 vs. ExPASy Swiss-Prot
Match: AB27G_ARATH (ABC transporter G family member 27 OS=Arabidopsis thaliana GN=ABCG27 PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 4.069e-28
Identity = 75/219 (34.25%), Postives = 120/219 (54.79%), Query Frame = 1
Query:  265 PNYPLLLSFNNLSYSVKVGQKLLPDLPFFGSQXXXXXXXXXXXXISGVAREGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSKLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHXXXXXXXXXXXXXXXDIIHDPILLFLDEPISGLDFTSAFNVVKVLKQIAKSGSIVI 921
            P +P+ L F +++Y V                            ISG A  GE+ A++G SGS KTTL++A+ GR ++Q + G+V+ N +   SK LK    +V QDD+L+  LT++ETL ++A  RLP++L++++K +R  ++I +LGL     T+IG                   +I+ +P LL LDEP S LD T+A  +V++L  IAK+G  ++
Sbjct:  139 PTFPIYLKFIDITYKVTT------------KGMTSSSEKSILNGISGSAYPGELLALMGPSGSGKTTLLNALGGRFNQQNIGGSVSYNDKPY-SKHLKTRIGFVTQDDVLFPHLTVKETLTYTALLRLPKTLTEQEKEQRAASVIQELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIMTNPSLLLLDEPTSSLDSTTALKIVQMLHCIAKAGKTIV 344          
BLAST of FC877834 vs. ExPASy Swiss-Prot
Match: ABCGO_DICDI (ABC transporter G family member 24 OS=Dictyostelium discoideum GN=abcG24 PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 1.002e-26
Identity = 67/172 (38.95%), Postives = 103/172 (59.88%), Query Frame = 1
Query:  397 ISGVAREGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSKLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHXXXXXXXXXXXXXXXDIIHDPILLFLDEPISGLDFTSAFNVVKVLKQIAKSGS 912
            ++GV   G++TA++G SGS KT+L+D ++GR +   + G V +NG  +G K  K IS YV QDD+    LT  E LMF+A  +LP ++S E K++RV +++++LGL   A   IG  +                ++I DP +LF+DEP SGLD  SA  ++  LKQ+A + +
Sbjct:  483 VNGVCPPGQLTALMGLSGSGKTSLLDILSGRKNVGNIDGKVLINGAPVG-KNFKRISGYVTQDDIQIGTLTCREHLMFAALLKLPENMSLEIKQQRVASVLEELGLTRVADNPIGTSEKRGISGGERRRLSIATELIVDPSILFIDEPTSGLDSHSASELITKLKQLANNST 653          
BLAST of FC877834 vs. ExPASy Swiss-Prot
Match: AB11G_ARATH (ABC transporter G family member 11 OS=Arabidopsis thaliana GN=ABCG11 PE=1 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.309e-26
Identity = 71/176 (40.34%), Postives = 103/176 (58.52%), Query Frame = 1
Query:  397 ISGVAREGEITAILGASGSSKTTLMDAIAGRISKQR-LKGTVTLNGEVLGSKLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHXXXXXXXXXXXXXXXDIIHDPILLFLDEPISGLDFTSAFNVVKVLKQIAKSGSIVI 921
            ++G A  G +TA++G SGS K+T++DA+A R++    L GTV LNG    +KL    +AYV QDD L   LT+ ET+ +SA  RLP  + + +KR  V+  I ++GL+  A T+IG+                  +I+  P LLFLDEP SGLD  SAF V + L+ +++ G  VI
Sbjct:   73 LTGYAEPGSLTALMGPSGSGKSTMLDALASRLAANAFLSGTVLLNGRK--TKLSFGTAAYVTQDDNLIGTLTVRETIWYSARVRLPDKMLRSEKRALVERTIIEMGLQDCADTVIGNWHLRGISGGEKRRVSIALEILMRPRLLFLDEPTSGLDSASAFFVTQTLRALSRDGRTVI 246          
BLAST of FC877834 vs. ExPASy Swiss-Prot
Match: AB25G_ARATH (ABC transporter G family member 25 OS=Arabidopsis thaliana GN=ABCG25 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 6.496e-26
Identity = 73/219 (33.33%), Postives = 116/219 (52.97%), Query Frame = 1
Query:  271 YPLLLSFNNLSYSVKVG---------QKLLPDLPFFGSQXXXXXXXXXXXXISGVAREGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSKLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHXXXXXXXXXXXXXXXDIIHDPILLFLDEPISGLDFTSAFNVVKVLKQIA 900
            +P+ L F ++ Y VK+          +KLL        +            ++G+   GE  A+LG SGS K+TL++A+AGR+    L G + +N   +  + LK  + +V QDDLLY  LT+ ETL+F A  RLPRSL+++ K +  +++I +LGL     T++G+                  +++ +P LL LDEP SGLD T+A  +V+ L  +A
Sbjct:   36 FPITLKFVDVCYRVKIHGMSNDSCNIKKLLGLKQKPSDETRSTEERTILSGVTGMISPGEFMAVLGPSGSGKSTLLNAVAGRLHGSNLTGKILINDGKITKQTLKR-TGFVAQDDLLYPHLTVRETLVFVALLRLPRSLTRDVKLRAAESVISELGLTKCENTVVGNTFIRGISGGERKRVSIAHELLINPSLLVLDEPTSGLDATAALRLVQTLAGLA 253          
BLAST of FC877834 vs. ExPASy Swiss-Prot
Match: AB15G_ARATH (ABC transporter G family member 15 OS=Arabidopsis thaliana GN=ABCG15 PE=2 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 6.496e-26
Identity = 69/176 (39.20%), Postives = 105/176 (59.66%), Query Frame = 1
Query:  397 ISGVAREGEITAILGASGSSKTTLMDAIAGRISKQR-LKGTVTLNGEVLGSKLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHXXXXXXXXXXXXXXXDIIHDPILLFLDEPISGLDFTSAFNVVKVLKQIAKSGSIVI 921
            ++G A  G I AI+G SGS K+TL+D++AGR+++   + G + LNG+   ++L   + AYV Q+D+L   LT+ ET+ +SA  RLP  +SKE+    V+  I +LGL+  +  +IG+                  +I+  P +LFLDEP SGLD  SAF V++ L+ IA+ G  VI
Sbjct:   49 LNGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLARNVVMTGNLLLNGKK--ARLDYGLVAYVTQEDVLLGTLTVRETITYSAHLRLPSDMSKEEVSDIVEGTIMELGLQDCSDRVIGNWHARGVSGGERKRVSIALEILTRPQILFLDEPTSGLDSASAFFVIQALRNIARDGRTVI 222          
BLAST of FC877834 vs. ExPASy Swiss-Prot
Match: ABCG2_MACMU (ATP-binding cassette sub-family G member 2 OS=Macaca mulatta GN=ABCG2 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 8.484e-26
Identity = 72/214 (33.64%), Postives = 115/214 (53.74%), Query Frame = 1
Query:  280 LLSFNNLSYSVKVGQKLLPDLPFFGSQXXXXXXXXXXXXISGVAREGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSKLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHXXXXXXXXXXXXXXXDIIHDPILLFLDEPISGLDFTSAFNVVKVLKQIAKSGSIVI 921
            +LSF+N+ Y VKV    LP                    I+G+ + G + AILG +G  K++L+D +A R     L G V +NG +  +   K  S YV+QDD++   LT+ E L FSA  RLP +++  +K +R++ +I +LGL   A + +G +                 ++I DP +LFLDEP +GLD ++A  V+ +LK+++K G  +I
Sbjct:   36 VLSFHNICYRVKVKSGFLPG--------RKPVEKEILSNINGIMKPG-LNAILGPTGGGKSSLLDVLAARKDPSGLSGDVLINGALRPTNF-KCNSGYVVQDDVVMGTLTVRENLQFSAALRLPTTMTNHEKNERINRVIQELGLDKVADSKVGTQFIRGVSGGERKRTSIGMELITDPSILFLDEPTTGLDSSTANAVLLLLKRMSKQGRTII 239          
BLAST of FC877834 vs. ExPASy Swiss-Prot
Match: AB26G_ARATH (ABC transporter G family member 26 OS=Arabidopsis thaliana GN=ABCG26 PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 8.484e-26
Identity = 85/256 (33.20%), Postives = 126/256 (49.22%), Query Frame = 1
Query:  199 NDYSSVISIDMPYSNGSSSNELPNYPLLLSFNNLSYSVKVGQ-------KLLPDLPFFGSQXXXXXXXXXXXXISGVAREGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSKLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGL--------RSAAMTIIGDEQHXXXXXXXXXXXXXXXDIIHDPILLFLDEPISGLDFTSAFNVVKVLKQIAKSGSIVI 921
            N YSS I ID  + +     + P  P+ L F ++ Y V+          K +       +             I+G    GEI A++G SGS KTTL+  + GR++   +KG +T N ++  S  +K    +V QDD+L   LT+EETL F+A  RLP S+SKE+K  +++ +I +LGL             T +G                   +I+ DP LL LDEP SGLD TSA  ++ +L+ +AK+G  VI
Sbjct:   38 NQYSSEIDIDEEFVSTYPLEDAP-LPIFLKFEDVEYKVRNSHASSANLVKTMVSKVVTHTNPDPDGYKHILKGITGSTGPGEILALMGPSGSGKTTLLKIMGGRLT-DNVKGKLTYN-DIPYSPSVKRRIGFVTQDDVLLPQLTVEETLAFAAFLRLPSSMSKEQKYAKIEMIIKELGLERFIEKHNERCRRTRVGGGFVKGISGGERKRASIAYEILVDPSLLLLDEPTSGLDSTSATKLLHILQGVAKAGRTVI 290          
BLAST of FC877834 vs. ExPASy Swiss-Prot
Match: ABCG2_PIG (ATP-binding cassette sub-family G member 2 OS=Sus scrofa GN=ABCG2 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.447e-25
Identity = 81/242 (33.47%), Postives = 125/242 (51.65%), Query Frame = 1
Query:  217 ISIDMPYSN-----GSSSNELPNYP--LLLSFNNLSYSVKVGQKLLPDLPFFGSQXXXXXXXXXXXXISGVAREGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSKLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHXXXXXXXXXXXXXXXDIIHDPILLFLDEPISGLDFTSAFNVVKVLKQIAKSGSIVI 921
            +SI M   N     GSSSNEL       +LSF+++ Y VKV    L                     I+G+ + G + AILG +G  K++L+D +A R     L G V +NG    +   K  S YV+QDD++   LT+ E L FSA  RLP +++  +K +R++ +I +LGL   A + +G +                 ++I DP +LFLDEP +GLD ++A  V+ +LK+++K G  +I
Sbjct:    8 VSIPMSKRNTNGLPGSSSNELKTSAGGAVLSFHDICYRVKVKSGFL--------FCRKTVEKEILTNINGIMKPG-LNAILGPTGGGKSSLLDVLAARKDPHGLSGDVLINGAPRPANF-KCNSGYVVQDDVVMGTLTVRENLQFSAALRLPTTMTNHEKNERINMVIQELGLDKVADSKVGTQFIRGVSGGERKRTSIAMELITDPSILFLDEPTTGLDSSTANAVLLLLKRMSKQGRTII 239          
The following BLAST results are available for this feature:
BLAST of FC877834 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 122
Match NameE-valueIdentityDescription
AB22G_ARATH2.157e-2936.99ABC transporter G family member 22 OS=Arabidopsis ... [more]
AB14G_ARATH2.385e-2834.30ABC transporter G family member 14 OS=Arabidopsis ... [more]
AB27G_ARATH4.069e-2834.25ABC transporter G family member 27 OS=Arabidopsis ... [more]
ABCGO_DICDI1.002e-2638.95ABC transporter G family member 24 OS=Dictyosteliu... [more]
AB11G_ARATH1.309e-2640.34ABC transporter G family member 11 OS=Arabidopsis ... [more]
AB25G_ARATH6.496e-2633.33ABC transporter G family member 25 OS=Arabidopsis ... [more]
AB15G_ARATH6.496e-2639.20ABC transporter G family member 15 OS=Arabidopsis ... [more]
ABCG2_MACMU8.484e-2633.64ATP-binding cassette sub-family G member 2 OS=Maca... [more]
AB26G_ARATH8.484e-2633.20ABC transporter G family member 26 OS=Arabidopsis ... [more]
ABCG2_PIG1.447e-2533.47ATP-binding cassette sub-family G member 2 OS=Sus ... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA99CF05RM1 IVIA1 Citrus clementina cDNA clone IC0AAA99CF05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877834 ID=FC877834; Name=FC877834; organism=Citrus clementina; type=EST; length=923bp
CCTGCTACTTTGCATTATTAGCACTATCATTTTCCGCTGGCAAAAAATCC
AACTATGTCGCCGGCTTCTGCCGACGACAACCCTTTGCTCTTCATCAATC
AGAAACCAAATGTAGAGCTTCAAAACCAAAATCGAAGTCGCAGATTCACA
GGCTCCTCTGGCAGGTCCATCAACAAAGAGCTTGAAAGTGAGCCGATTAA
CGATTACTCTTCAGTCATCAGCATCGACATGCCGTATTCTAATGGTAGCA
GCAGTAACGAACTACCTAACTACCCATTACTTCTTTCATTCAACAACTTA
TCCTACAGTGTTAAAGTTGGTCAAAAATTGCTTCCGGATCTTCCATTTTT
TGGCTCACAAGATGATGTTAAGAAGACAAAGCTTTTACTGGATGATATTT
CTGGGGTAGCTAGAGAAGGTGAAATAACTGCGATTCTTGGTGCTAGTGGC
TCTAGTAAAACTACTTTGATGGACGCTATTGCTGGCCGCATATCAAAACA
GAGATTGAAAGGCACTGTGACATTGAATGGAGAGGTTTTGGGGTCAAAGC
TTTTGAAGATCATATCTGCTTATGTGATGCAAGATGATCTTTTGTATTCC
ATGCTAACCATAGAGGAAACCCTTATGTTCTCAGCGGAATTTAGGCTTCC
TCGATCTTTATCTAAAGAAAAAAAGCGAAAAAGAGTGGATGCTTTGATTG
ATCAACTCGGTCTTCGAAGTGCAGCCATGACCATAATTGGTGATGAGCAA
CACAGAGGTGTTTCAGGAGGCGAGCGCAGGCGGGTTTCTATCGGAGTTGA
TATAATTCATGATCCAATTCTCTTGTTCCTGGACGAACCCATATCAGGGC
TTGATTTCACAAGCGCGTTTAATGTTGTCAAGGTGTTAAAACAGATTGCA
AAAAGTGGAAGCATTGTCATCAT
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