FC877834

Overview
NameFC877834
Unique NameFC877834
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length923
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC877834 vs. ExPASy Swiss-Prot
Match: PDR1_SCHPO (ATP-binding cassette transporter pdr1 OS=Schizosaccharomyces pombe GN=pdr1 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 8.236e-13
Identity = 53/175 (30.29%), Postives = 87/175 (49.71%), Query Frame = 1
Query:  397 ISGVAREGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSKLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHXXXXXXXXXXXXXXXDIIHDPILLFLDEPISGLDFTSAFNVVKVLKQIAKSGSIVI 921
            +SG  ++  +TA+LG + S K+ L+  ++ R     ++G +TL+G      L K I  YV ++ L  S  T+ ETL   A  R  +  S  ++   V+ +ID LGL   A  I+GD                         +L LDEP +GLD  SA+ +V +L+++A+SG  ++
Sbjct:  780 VSGYLKKNTLTALLGENKSGKSVLLRILSQRGIAGSVEGEITLSGLKNPKNLRKRIG-YVRKNPLFISEYTVRETLRLHAALRQSKQRSLSEQYAYVEYVIDFLGLGEVADFIVGDMGKGLSLYHKRLLSIAVELSARPGSILLLDEPANGLDSQSAWMLVCILQKLARSGLSIL 953          
BLAST of FC877834 vs. ExPASy Swiss-Prot
Match: YXLF_BACSU (Uncharacterized ABC transporter ATP-binding protein yxlF OS=Bacillus subtilis GN=yxlF PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.405e-12
Identity = 52/174 (29.89%), Postives = 85/174 (48.85%), Query Frame = 1
Query:  397 ISGVAREGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSKLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHXXXXXXXXXXXXXXXDIIHDPILLFLDEPISGLDFTSAFNVVKVLKQIAKSGSIV 918
            +S    E E  A+LG +G+ KTT +  +AG +S     GT+ L GE    KL + +  Y+ Q    YS +T  E L F+        LSK K ++++  +++ +GL  AA   IG                    ++H P  L LDEP+S LD T  F V+ +++++ K  +++
Sbjct:   20 VSFHVNENECVALLGPNGAGKTTTLQMLAGLLSPT--SGTIKLLGE---KKLDRRLIGYLPQYPAFYSWMTANEFLTFAGRLS---GLSKRKCQEKIGEMLEFVGLHEAAHKRIGGYSGGMKQRLGLAQA-----LLHKPKFLILDEPVSALDPTGRFEVLDMMRELKKHMAVL 180          
The following BLAST results are available for this feature:
BLAST of FC877834 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 122
Match NameE-valueIdentityDescription
PDR1_SCHPO8.236e-1330.29ATP-binding cassette transporter pdr1 OS=Schizosac... [more]
YXLF_BACSU1.405e-1229.89Uncharacterized ABC transporter ATP-binding protei... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA99CF05RM1 IVIA1 Citrus clementina cDNA clone IC0AAA99CF05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877834 ID=FC877834; Name=FC877834; organism=Citrus clementina; type=EST; length=923bp
CCTGCTACTTTGCATTATTAGCACTATCATTTTCCGCTGGCAAAAAATCC
AACTATGTCGCCGGCTTCTGCCGACGACAACCCTTTGCTCTTCATCAATC
AGAAACCAAATGTAGAGCTTCAAAACCAAAATCGAAGTCGCAGATTCACA
GGCTCCTCTGGCAGGTCCATCAACAAAGAGCTTGAAAGTGAGCCGATTAA
CGATTACTCTTCAGTCATCAGCATCGACATGCCGTATTCTAATGGTAGCA
GCAGTAACGAACTACCTAACTACCCATTACTTCTTTCATTCAACAACTTA
TCCTACAGTGTTAAAGTTGGTCAAAAATTGCTTCCGGATCTTCCATTTTT
TGGCTCACAAGATGATGTTAAGAAGACAAAGCTTTTACTGGATGATATTT
CTGGGGTAGCTAGAGAAGGTGAAATAACTGCGATTCTTGGTGCTAGTGGC
TCTAGTAAAACTACTTTGATGGACGCTATTGCTGGCCGCATATCAAAACA
GAGATTGAAAGGCACTGTGACATTGAATGGAGAGGTTTTGGGGTCAAAGC
TTTTGAAGATCATATCTGCTTATGTGATGCAAGATGATCTTTTGTATTCC
ATGCTAACCATAGAGGAAACCCTTATGTTCTCAGCGGAATTTAGGCTTCC
TCGATCTTTATCTAAAGAAAAAAAGCGAAAAAGAGTGGATGCTTTGATTG
ATCAACTCGGTCTTCGAAGTGCAGCCATGACCATAATTGGTGATGAGCAA
CACAGAGGTGTTTCAGGAGGCGAGCGCAGGCGGGTTTCTATCGGAGTTGA
TATAATTCATGATCCAATTCTCTTGTTCCTGGACGAACCCATATCAGGGC
TTGATTTCACAAGCGCGTTTAATGTTGTCAAGGTGTTAAAACAGATTGCA
AAAAGTGGAAGCATTGTCATCAT
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