FC877834

Overview
NameFC877834
Unique NameFC877834
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length923
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC877834 vs. ExPASy Swiss-Prot
Match: ABCG2_HUMAN (ATP-binding cassette sub-family G member 2 OS=Homo sapiens GN=ABCG2 PE=1 SV=3)

HSP 1 Score: 116.316 bits (290), Expect = 2.468e-25
Identity = 78/247 (31.58%), Postives = 128/247 (51.82%), Query Frame = 1
Query:  208 SSVISIDMPYSNGSS-------SNELPNYP--LLLSFNNLSYSVKVGQKLLPDLPFFGSQXXXXXXXXXXXXISGVAREGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSKLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHXXXXXXXXXXXXXXXDIIHDPILLFLDEPISGLDFTSAFNVVKVLKQIAKSGSIVI 921
            SS + + +P S G++       SN+L  +    +LSF+N+ Y VK+    LP                    I+G+ + G + AILG +G  K++L+D +A R     L G V +NG    +   K  S YV+QDD++   LT+ E L FSA  RL  +++  +K +R++ +I +LGL   A + +G +                 ++I DP +LFLDEP +GLD ++A  V+ +LK+++K G  +I
Sbjct:    3 SSNVEVFIPVSQGNTNGFPATASNDLKAFTEGAVLSFHNICYRVKLKSGFLP--------CRKPVEKEILSNINGIMKPG-LNAILGPTGGGKSSLLDVLAARKDPSGLSGDVLINGAPRPANF-KCNSGYVVQDDVVMGTLTVRENLQFSAALRLATTMTNHEKNERINRVIQELGLDKVADSKVGTQFIRGVSGGERKRTSIGMELITDPSILFLDEPTTGLDSSTANAVLLLLKRMSKQGRTII 239          
BLAST of FC877834 vs. ExPASy Swiss-Prot
Match: AB7G_ARATH (ABC transporter G family member 7 OS=Arabidopsis thaliana GN=ABCG7 PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 2.468e-25
Identity = 67/178 (37.64%), Postives = 107/178 (60.11%), Query Frame = 1
Query:  397 ISGVAREGEITAILGASGSSKTTLMDAIAGRIS---KQRLKGTVTLNGEVLGSKLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHXXXXXXXXXXXXXXXDIIHDPILLFLDEPISGLDFTSAFNVVKVLKQIAKSGSIVI 921
            +SG A+ G + AI+G SGS KTTL++ +AG++S   +  L G + +NG+   SK  K+  A+V Q+DL +S LT+ ETL F+AE +LP   S E++ + V+ L+ +LGL S A + +GD +                ++I  P ++F DEP +GLD   A  V++ L+++A+ G  VI
Sbjct:   94 VSGEAKPGRLLAIMGPSGSGKTTLLNVLAGQLSLSPRLHLSGLLEVNGKPSSSKAYKL--AFVRQEDLFFSQLTVRETLSFAAELQLPEISSAEERDEYVNNLLLKLGLVSCADSCVGDAKVRGISGGEKKRLSLACELIASPSVIFADEPTTGLDAFQAEKVMETLQKLAQDGHTVI 269          
BLAST of FC877834 vs. ExPASy Swiss-Prot
Match: ABCG2_RAT (ATP-binding cassette sub-family G member 2 OS=Rattus norvegicus GN=Abcg2 PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 9.380e-25
Identity = 70/214 (32.71%), Postives = 115/214 (53.74%), Query Frame = 1
Query:  280 LLSFNNLSYSVKVGQKLLPDLPFFGSQXXXXXXXXXXXXISGVAREGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSKLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHXXXXXXXXXXXXXXXDIIHDPILLFLDEPISGLDFTSAFNVVKVLKQIAKSGSIVI 921
            +LSF++++Y VKV    L                     I+G+ + G + AILG +G  K++L+D +A R   + L G V +NG    +   K  S YV+QDD++   LT+ E L FSA  RLP+++   +K +R++ +I +LGL   A + +G +                 ++I DP +LFLDEP +GLD ++A  V+ +LK+++K G  +I
Sbjct:   36 VLSFHHITYRVKVKSGFL---------VRKTAEKEILSDINGIMKPG-LNAILGPTGGGKSSLLDVLAARKDPRGLSGDVLINGAPQPANF-KCSSGYVVQDDVVMGTLTVRENLQFSAALRLPKAMKTHEKNERINTIIKELGLDKVADSKVGTQFTRGISGGERKRTSIGMELITDPSILFLDEPTTGLDSSTANAVLLLLKRMSKQGRTII 238          
BLAST of FC877834 vs. ExPASy Swiss-Prot
Match: ABCG2_MOUSE (ATP-binding cassette sub-family G member 2 OS=Mus musculus GN=Abcg2 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.225e-24
Identity = 70/214 (32.71%), Postives = 114/214 (53.27%), Query Frame = 1
Query:  280 LLSFNNLSYSVKVGQKLLPDLPFFGSQXXXXXXXXXXXXISGVAREGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSKLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHXXXXXXXXXXXXXXXDIIHDPILLFLDEPISGLDFTSAFNVVKVLKQIAKSGSIVI 921
            +LSF++++Y VKV    L                     I+G+ + G + AILG +G  K++L+D +A R   + L G V +NG    +   K  S YV+QDD++   LT+ E L FSA  RLP ++   +K +R++ +I +LGL   A + +G +                 ++I DP +LFLDEP +GLD ++A  V+ +LK+++K G  +I
Sbjct:   36 VLSFHHITYRVKVKSGFL---------VRKTVEKEILSDINGIMKPG-LNAILGPTGGGKSSLLDVLAARKDPKGLSGDVLINGAPQPAHF-KCCSGYVVQDDVVMGTLTVRENLQFSAALRLPTTMKNHEKNERINTIIKELGLEKVADSKVGTQFIRGISGGERKRTSIGMELITDPSILFLDEPTTGLDSSTANAVLLLLKRMSKQGRTII 238          
BLAST of FC877834 vs. ExPASy Swiss-Prot
Match: AB12G_ARATH (ABC transporter G family member 12 OS=Arabidopsis thaliana GN=ABCG12 PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.225e-24
Identity = 67/172 (38.95%), Postives = 102/172 (59.30%), Query Frame = 1
Query:  397 ISGVAREGEITAILGASGSSKTTLMDAIAGRISKQRLK-GTVTLNGEVLGSKLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHXXXXXXXXXXXXXXXDIIHDPILLFLDEPISGLDFTSAFNVVKVLKQIAKSG 909
            ++G A  G I AI+G SGS K+TL+D++AGR+++  +  G + LNG+   ++L   + AYV Q+D+L   LT+ ET+ +SA  RL   L+KE+    V+  I +LGL+  A  +IG+                  +I+  P +LFLDEP SGLD  SAF V++ L+ IA+ G
Sbjct:   48 LNGHAEPGRIMAIMGPSGSGKSTLLDSLAGRLARNVIMTGNLLLNGKK--ARLDYGLVAYVTQEDILMGTLTVRETITYSAHLRLSSDLTKEEVNDIVEGTIIELGLQDCADRVIGNWHSRGVSGGERKRVSVALEILTRPQILFLDEPTSGLDSASAFFVIQALRNIARDG 217          
BLAST of FC877834 vs. ExPASy Swiss-Prot
Match: AB13G_ARATH (ABC transporter G family member 13 OS=Arabidopsis thaliana GN=ABCG13 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.600e-24
Identity = 67/179 (37.43%), Postives = 102/179 (56.98%), Query Frame = 1
Query:  397 ISGVAREGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSKLLKII----SAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHXXXXXXXXXXXXXXXDIIHDPILLFLDEPISGLDFTSAFNVVKVLKQIAKSGSIVI 921
            ++G      I AI+G SGS K+TL+DA+AGR++     G V ++G+VL +   + +    +AYV Q+D+L   LT+ E++ +SA  RLP  L++E+    V+A I  +GL   +   IG+                  +++  P LLFLDEP SGLD  SAF VV++L+ IA SG  V+
Sbjct:   34 VNGCGEPNRILAIMGPSGSGKSTLLDALAGRLA-----GNVVMSGKVLVNGKKRRLDFGAAAYVTQEDVLLGTLTVRESISYSAHLRLPSKLTREEISDIVEATITDMGLEECSDRTIGNWHLRGISGGEKKRLSIALEVLTKPSLLFLDEPTSGLDSASAFFVVQILRNIASSGKTVV 207          
BLAST of FC877834 vs. ExPASy Swiss-Prot
Match: ABCG1_DICDI (ABC transporter G family member 1 OS=Dictyostelium discoideum GN=abcG1 PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 2.090e-24
Identity = 65/177 (36.72%), Postives = 101/177 (57.06%), Query Frame = 1
Query:  397 ISGVAREGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSKLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIG--DEQHXXXXXXXXXXXXXXXDIIHDPILLFLDEPISGLDFTSAFNVVKVLKQIAKSGSIVI 921
            I+G    G I AI+G SG+ KTTL+D +A R++     GT+ LNG      + K +  YV Q D L   LT+ ETL F A+ ++PR +  ++K +RV  +ID++GL   A T++G  D +                +++  P ++ LDEP SGLD +++F V+  LK++AKSG  +I
Sbjct:  142 INGHIESGTIFAIMGPSGAGKTTLLDILAHRLNING-SGTMYLNGNKSDFNIFKKLCGYVTQSDSLMPSLTVRETLNFYAQLKMPRDVPLKEKLQRVQDIIDEMGLNRCADTLVGTADNKIRGISGGERRRVTISIELLTGPSVILLDEPTSGLDASTSFYVMSALKKLAKSGRTII 317          
BLAST of FC877834 vs. ExPASy Swiss-Prot
Match: AB5G_ARATH (ABC transporter G family member 5 OS=Arabidopsis thaliana GN=ABCG5 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.729e-24
Identity = 65/166 (39.16%), Postives = 99/166 (59.64%), Query Frame = 1
Query:  409 AREGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSKLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHXXXXXXXXXXXXXXXDIIHDPILLFLDEPISGLDFTSAFNVVKVLKQIAKS 906
            A+  EI AI+G SG+ K++L++ +A R+  Q   G+V +N   +     K IS YV Q D L+ +LT+EETL+FSA+ RL   L  ++ R RV +L+ +LGL + A   +GD+                 ++IHDP +L LDEP SGLD TSA  ++ +LK +A++
Sbjct:   70 AKPWEILAIVGPSGAGKSSLLEILAARLIPQT--GSVYVNKRPVDRANFKKISGYVTQKDTLFPLLTVEETLLFSAKLRL--KLPADELRSRVKSLVHELGLEAVATARVGDDSVRGISGGERRRVSIGVEVIHDPKVLILDEPTSGLDSTSALLIIDMLKHMAET 231          
BLAST of FC877834 vs. ExPASy Swiss-Prot
Match: AB31G_ARATH (ABC transporter G family member 31 OS=Arabidopsis thaliana GN=ABCG31 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.729e-24
Identity = 65/220 (29.55%), Postives = 119/220 (54.09%), Query Frame = 1
Query:  262 LPNYPLLLSFNNLSYSVKVGQKLLPDLPFFGSQXXXXXXXXXXXXISGVAREGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSKLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHXXXXXXXXXXXXXXXDIIHDPILLFLDEPISGLDFTSAFNVVKVLKQIAKSGSIVI 921
            LP  PL ++F+N++Y V + +++        SQ            +SGV   G +TA++G+SG+ KTTLMD +AGR +    +G + ++G     +    IS YV Q+D+    +T+EE+L FSA  RLP+ ++KE+K++ V+ ++  + L +    ++G                   +++ +P ++F+DEP SGLD  +A  V++ ++    +G  V+
Sbjct:  819 LPFKPLTMTFHNVNYYVDMPKEMR-------SQGVPETRLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYTEGDIRISGHPKEQQTFARISGYVEQNDIHSPQVTVEESLWFSASLRLPKEITKEQKKEFVEQVMRLVELDTLRYALVGLPGTTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1031          

HSP 2 Score: 73.9442 bits (180), Expect = 1.405e-12
Identity = 56/198 (28.28%), Postives = 87/198 (43.94%), Query Frame = 1
Query:  397 ISGVAREGEITAILGASGSSKTTLMDAIAGRISKQRLK-GTVTLNGEVLGSKLLKIISAYVMQDDLLYSMLTIEETLMFSAE--------------------------------FRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHXXXXXXXXXXXXXXXDIIHDPILLFLDEPISGLDFTSAFNVVKVLK 891
            ISG+ + G +T +LG  GS K+TL+ A+AG++ K   K G +T NGE L    +K  SAY+ Q D   + LT+ ETL F+A                                 F    S+  EK     D ++  LGL   + T++G++                   +     LF+DE  +GLD ++ F +VK ++
Sbjct:  179 ISGIIKPGRMTLLLGPPGSGKSTLLLALAGKLDKSLKKTGNITYNGENLNKFHVKRTSAYISQTDNHIAELTVRETLDFAARCQGASEGFAGYMKDLTRLEKERGIRPSSEIDAFMKAASVKGEKHSVSTDYVLKVLGLDVCSDTMVGNDMMRGVSGGQRKRVTTGEMTVGPRKTLFMDEISTGLDSSTTFQIVKCIR 376          
BLAST of FC877834 vs. ExPASy Swiss-Prot
Match: ADP1_YEAST (Probable ATP-dependent permease OS=Saccharomyces cerevisiae GN=ADP1 PE=1 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 3.564e-24
Identity = 70/206 (33.98%), Postives = 112/206 (54.37%), Query Frame = 1
Query:  283 LSFNNLSYSVKVGQKLLPDLPFFGSQXXXXXXXXXXXXISGVAREGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSKLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHXXXXXXXXXXXXXXXDIIHDPILLFLDEPISGLDFTSAFNVVKVLKQIA 900
            LSF N++YSV       P +   G +            ISG+ + G+I AI+G SG+ KTTL+D +A +     + G++ +NG  +  K    I  +V QDD L   LT+ ET++ SA  RLP++LS E K+ RV  ++++L +      IIG+E                 +++  P++LFLDEP SGLD ++A NV++ L +++
Sbjct:  384 LSFENITYSV-------PSINSDGVEETVLNE------ISGIVKPGQILAIMGGSGAGKTTLLDILAMKRKTGHVSGSIKVNGISMDRKSFSKIIGFVDQDDFLLPTLTVFETVLNSALLRLPKALSFEAKKARVYKVLEELRIIDIKDRIIGNEFDRGISGGEKRRVSIACELVTSPLVLFLDEPTSGLDASNANNVIECLVRLS 576          
The following BLAST results are available for this feature:
BLAST of FC877834 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 122
Match NameE-valueIdentityDescription
ABCG2_HUMAN2.468e-2531.58ATP-binding cassette sub-family G member 2 OS=Homo... [more]
AB7G_ARATH2.468e-2537.64ABC transporter G family member 7 OS=Arabidopsis t... [more]
ABCG2_RAT9.380e-2532.71ATP-binding cassette sub-family G member 2 OS=Ratt... [more]
ABCG2_MOUSE1.225e-2432.71ATP-binding cassette sub-family G member 2 OS=Mus ... [more]
AB12G_ARATH1.225e-2438.95ABC transporter G family member 12 OS=Arabidopsis ... [more]
AB13G_ARATH1.600e-2437.43ABC transporter G family member 13 OS=Arabidopsis ... [more]
ABCG1_DICDI2.090e-2436.72ABC transporter G family member 1 OS=Dictyostelium... [more]
AB5G_ARATH2.729e-2439.16ABC transporter G family member 5 OS=Arabidopsis t... [more]
AB31G_ARATH2.729e-2429.55ABC transporter G family member 31 OS=Arabidopsis ... [more]
ADP1_YEAST3.564e-2433.98Probable ATP-dependent permease OS=Saccharomyces c... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA99CF05RM1 IVIA1 Citrus clementina cDNA clone IC0AAA99CF05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877834 ID=FC877834; Name=FC877834; organism=Citrus clementina; type=EST; length=923bp
CCTGCTACTTTGCATTATTAGCACTATCATTTTCCGCTGGCAAAAAATCC
AACTATGTCGCCGGCTTCTGCCGACGACAACCCTTTGCTCTTCATCAATC
AGAAACCAAATGTAGAGCTTCAAAACCAAAATCGAAGTCGCAGATTCACA
GGCTCCTCTGGCAGGTCCATCAACAAAGAGCTTGAAAGTGAGCCGATTAA
CGATTACTCTTCAGTCATCAGCATCGACATGCCGTATTCTAATGGTAGCA
GCAGTAACGAACTACCTAACTACCCATTACTTCTTTCATTCAACAACTTA
TCCTACAGTGTTAAAGTTGGTCAAAAATTGCTTCCGGATCTTCCATTTTT
TGGCTCACAAGATGATGTTAAGAAGACAAAGCTTTTACTGGATGATATTT
CTGGGGTAGCTAGAGAAGGTGAAATAACTGCGATTCTTGGTGCTAGTGGC
TCTAGTAAAACTACTTTGATGGACGCTATTGCTGGCCGCATATCAAAACA
GAGATTGAAAGGCACTGTGACATTGAATGGAGAGGTTTTGGGGTCAAAGC
TTTTGAAGATCATATCTGCTTATGTGATGCAAGATGATCTTTTGTATTCC
ATGCTAACCATAGAGGAAACCCTTATGTTCTCAGCGGAATTTAGGCTTCC
TCGATCTTTATCTAAAGAAAAAAAGCGAAAAAGAGTGGATGCTTTGATTG
ATCAACTCGGTCTTCGAAGTGCAGCCATGACCATAATTGGTGATGAGCAA
CACAGAGGTGTTTCAGGAGGCGAGCGCAGGCGGGTTTCTATCGGAGTTGA
TATAATTCATGATCCAATTCTCTTGTTCCTGGACGAACCCATATCAGGGC
TTGATTTCACAAGCGCGTTTAATGTTGTCAAGGTGTTAAAACAGATTGCA
AAAAGTGGAAGCATTGTCATCAT
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