FC877834

Overview
NameFC877834
Unique NameFC877834
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length923
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC877834 vs. ExPASy Swiss-Prot
Match: ABCGM_DICDI (ABC transporter G family member 22 OS=Dictyostelium discoideum GN=abcG22 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 4.655e-24
Identity = 68/220 (30.91%), Postives = 113/220 (51.36%), Query Frame = 1
Query:  277 LLLSFNNLSYSVKVGQKLLPDLPFFGSQXXXXXXXXXXXXISGVAREGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSKLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHXXXXXXXXXXXXXXX-----DIIHDPILLFLDEPISGLDFTSAFNVVKVLKQIAKSGSIVI 921
            L ++F +L+YSV V +K +  L                  +SG    GE+ A+ G SGS KTTL+D +A R     + G V +NG  +     ++ S YV+Q+D+L   +T+ ETL F A+ +LP+S ++++K +R++ +++Q+GL   A   IG                         ++  P ++ LDEP SGLD TSA  V+K L ++ +  S+ +
Sbjct:   29 LTITFKDLAYSVTVKKKKMQILK----------------GVSGTVTPGELVAVFGPSGSGKTTLLDILANRKESGEISGAVLINGNEIDDDYKRLCS-YVVQEDVLLPTITVRETLRFYADLKLPKSWTEKEKHERIEQILEQIGLSHRADAKIGGVLPGGIVLRGLSGGEKRRVSIGCGLVTSPSIVLLDEPTSGLDTTSAMAVMKTLVELTQQKSVTV 231          
BLAST of FC877834 vs. ExPASy Swiss-Prot
Match: ABCG2_BOVIN (ATP-binding cassette sub-family G member 2 OS=Bos taurus GN=ABCG2 PE=3 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 4.655e-24
Identity = 72/214 (33.64%), Postives = 113/214 (52.80%), Query Frame = 1
Query:  280 LLSFNNLSYSVKVGQKLLPDLPFFGSQXXXXXXXXXXXXISGVAREGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSKLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHXXXXXXXXXXXXXXXDIIHDPILLFLDEPISGLDFTSAFNVVKVLKQIAKSGSIVI 921
            +LSF+N+ Y VKV    L                     I+GV + G + AILG +G  K++L+D +A R     L G V +NG    +   K  S YV+QDD++   LT+ E L FSA  RLP +++  +K +R++ +I +LGL   A + +G +                 ++I DP +LFLDEP +GLD ++A  V+ +LK+++K G  +I
Sbjct:   35 VLSFHNICYRVKVKTGFL--------LCRKTIEKEILANINGVMKPG-LNAILGPTGGGKSSLLDILAARKDPHGLSGDVLINGAPRPANF-KCNSGYVVQDDVVMGTLTVRENLQFSAALRLPTTMTSYEKNERINKVIQELGLDKVADSKVGTQFIRGVSGGERKRTSIAMELITDPSILFLDEPTTGLDSSTANAVLLLLKRMSKQGRTII 238          
BLAST of FC877834 vs. ExPASy Swiss-Prot
Match: AB24G_ARATH (ABC transporter G family member 24 OS=Arabidopsis thaliana GN=ABCG24 PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 7.941e-24
Identity = 60/171 (35.09%), Postives = 98/171 (57.31%), Query Frame = 1
Query:  397 ISGVAREGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSKLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHXXXXXXXXXXXXXXXDIIHDPILLFLDEPISGLDFTSAFNVVKVLKQIAKSG 909
            ++G  + G ITA++G SG+ KT+L+ A+AG+    +L G + +NG+       K I  +V QDD+++  LT+EE L F A+ RLP  LSK  K   V+ +ID LGL++   +++G  +                +++ +P +LFLDEP SGLD  S+  +++ L+  A  G
Sbjct:  497 VTGSMKPGRITAVMGPSGAGKTSLLSALAGKAVGCKLSGLILINGKQESIHSYKKIIGFVPQDDVVHGNLTVEENLWFHAKCRLPADLSKADKVLVVERIIDSLGLQAVRSSLVGTVEKRGISGGQRKRVNVGLEMVMEPSVLFLDEPTSGLDSASSQLLLRALRHEALEG 667          
BLAST of FC877834 vs. ExPASy Swiss-Prot
Match: AB10G_ARATH (ABC transporter G family member 10 OS=Arabidopsis thaliana GN=ABCG10 PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 7.941e-24
Identity = 63/176 (35.80%), Postives = 97/176 (55.11%), Query Frame = 1
Query:  397 ISGVAREGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSKLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHXXXXXXXXXXXXXXXDIIHDPILLFLDEPISGLDFTSAFNVVKVLKQIA-KSGSIVI 921
            +S  AR  EITAI G SG+ KTTL++ +AG++S  ++ G V +NG  +     + +S +V Q+D L+  LT++ETL +SA  RL     ++    +V  LI +LGL   A + IG                   +++HDP ++ +DEP SGLD  SA  VV +LK +  K G  ++
Sbjct:   54 VSCDARSAEITAIAGPSGAGKTTLLEILAGKVSHGKVSGQVLVNGRPMDGPEYRRVSGFVPQEDALFPFLTVQETLTYSALLRL--KTKRKDAAAKVKRLIQELGLEHVADSRIGQGSRSGISGGERRRVSIGVELVHDPNVILIDEPTSGLDSASALQVVTLLKDMTIKQGKTIV 227          
BLAST of FC877834 vs. ExPASy Swiss-Prot
Match: ABCGI_DICDI (ABC transporter G family member 18 OS=Dictyostelium discoideum GN=abcG18 PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.769e-23
Identity = 64/175 (36.57%), Postives = 102/175 (58.29%), Query Frame = 1
Query:  397 ISGVAREGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSKLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHXXXXXXXXXXXXXXXDIIHDPILLFLDEPISGLDFTSAFNVVKVLKQIAKSGSIVI 921
            I+G  + G + A++G SG+ K+TL+D +A R +    KG + +NG+   +K     SAYV Q D+L  + T+ E ++FSA+ RLP S+  ++K + VD +++ L L     ++IGD +                ++  DP LLFLDEP SGLD ++A  V+ ++K+IA SG  VI
Sbjct:  834 INGYVKPGMLVALMGPSGAGKSTLLDVLANRKTGGHTKGQILINGQER-TKYFTRTSAYVEQMDILTPVSTVREVILFSAKNRLPNSVPIQEKEEFVDNILETLNLLKIQHSLIGDVE-SGLSLSQRKRVNMGIELASDPQLLFLDEPTSGLDSSAALKVMNLIKKIASSGRSVI 1006          

HSP 2 Score: 80.4925 bits (197), Expect = 1.501e-14
Identity = 64/231 (27.71%), Postives = 111/231 (48.05%), Query Frame = 1
Query:  220 SID--MPYSNGSSSN--ELPNYPLLLSFNNLSYSVKVGQ---KLLPDLPFFGSQXXXXXXXXXXXXISGVAREGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSKLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHXXXXXXXXXXXXXXXDIIHDPILLFLDEPISGLDFTSAFNVVKVLK 891
            SID  + +S  SS N   LP   + +S  NLS +V  G+   K+L DL FF                    + G +  +LG+ G  KT+LM+ +A   S +++ G +  NG+           +YV+QDD   + LT+ +T  FSA+ +     S++++ + VD ++D L L+    T++GDE                 +++ +  LL +DEP +GLD + +  ++  +K
Sbjct:   44 SIDGGLNFSTTSSYNPSNLPRTSVFVSARNLSSTVGHGKNEKKILTDLNFF-------------------LKPGSMVLLLGSPGCGKTSLMNTLALLTSNEKITGNLLFNGKTGDPNTHHRHVSYVVQDDFHMAPLTVRDTFKFSADCQ-SGDKSEKERIEIVDNVLDFLDLKHVQNTVVGDEFLRGISGGQKKRVTIGVELVKESNLLLMDEPTNGLDSSISLEMLTKIK 254          
BLAST of FC877834 vs. ExPASy Swiss-Prot
Match: ABCGF_DICDI (ABC transporter G family member 15 OS=Dictyostelium discoideum GN=abcG15 PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 2.310e-23
Identity = 74/241 (30.71%), Postives = 127/241 (52.70%), Query Frame = 1
Query:  199 NDYSSVISIDMPYSNGSSSNELPNYPLLLSFNNLSYSVKVG---QKLLPDLPFFGSQXXXXXXXXXXXXISGVAREGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSKLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGD-EQHXXXXXXXXXXXXXXXDIIHDPILLFLDEPISGLDFTSAFNVVKVLKQIAKSG 909
            N+    + +    +N   S  +P    L ++ ++ YSV +G    KLL D                   I G  + G++TA++G+SG+ KTTL+D +A R +  +++GT  LNG+ L     + I+ YV Q D+L   LT+ ETL FSA+ R   ++S E+K K V+ +++ + ++     +IGD E                 +++  P +LFLDEP SGLD  S++N++K ++++A +G
Sbjct:  816 NEKQQNLLVQQATNNMKESLSMPGG--LFTWQHMYYSVPIGGNTMKLLLD------------------DIQGWIKPGQMTALMGSSGAGKTTLLDVLAKRKTTGQVQGTTLLNGKPLEIDFER-ITGYVEQMDVLNPALTVRETLRFSAKLRGEPTISLEEKFKYVEQVLEMMEMKHLGDALIGDLETGVGISVEERKRTTIGVELVAKPHILFLDEPTSGLDAQSSYNIIKFIRKLADAG 1035          
BLAST of FC877834 vs. ExPASy Swiss-Prot
Match: WHITE_CERCA (Protein white OS=Ceratitis capitata GN=W PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 3.017e-23
Identity = 71/178 (39.89%), Postives = 102/178 (57.30%), Query Frame = 1
Query:  400 SGVAREGEITAILGASGSSKTTLMDAIAGRISK--QRLKGTVT-LNGEVLGSKLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIG-DEQHXXXXXXXXXXXXXXXDIIHDPILLFLDEPISGLDFTSAFNVVKVLKQIAKSGSIVI 921
            SGVA  GE+ A++G+SG+ KTTL++A A R SK  Q    T+  LNG  + +K ++   AYV QDDL    LT  E L+F A  R+PR +++++K +RVD +I  L L     T+IG   +                + + DP LL  DEP SGLD   A +VV+VLK++++ G  VI
Sbjct:  108 SGVAYPGELLAVMGSSGAGKTTLLNASAFRSSKGVQISPSTIRMLNGHPVDAKEMQARCAYVQQDDLFIGSLTAREHLIFQAMVRMPRHMTQKQKVQRVDQVIQDLSLGKCQNTLIGVPGRVKGLSGGERKRLAFASEALTDPPLLICDEPTSGLDSFMAHSVVQVLKKLSQKGKTVI 285          
BLAST of FC877834 vs. ExPASy Swiss-Prot
Match: AB29G_ARATH (ABC transporter G family member 29 OS=Arabidopsis thaliana GN=ABCG29 PE=2 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 3.017e-23
Identity = 67/235 (28.51%), Postives = 122/235 (51.91%), Query Frame = 1
Query:  241 NGSSSNE--------LPNYPLLLSFNNLSYSVKVGQKLLPDLPFFGSQXXXXXXXXXXXXISGVAREGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSKLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHXXXXXXXXXXXXXXXDIIHDPILLFLDEPISGLDFTSAFNVVKVLKQIAKSGSIVI 921
            NGS S          LP  PL +SF+N++Y V + +++         Q            ++GV R G +TA++G SG+ KTTLMD +AGR +   ++G + ++G     +    IS Y  Q+D+    +T++E+L++SA  RLP+ ++K +K + VD +++ + L S    ++G                   +++ +P ++F+DEP SGLD  +A  V++ ++    +G  V+
Sbjct:  792 NGSKSKSIDVKRGMVLPFTPLTMSFDNVNYYVDMPKEMK-------EQGVSKDKLQLLKEVTGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKRQETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLPKEVTKYEKMRFVDEVMELVELESLKDAVVGLPGITGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1019          
BLAST of FC877834 vs. ExPASy Swiss-Prot
Match: WHITE_DROME (Protein white OS=Drosophila melanogaster GN=w PE=1 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 3.941e-23
Identity = 70/180 (38.89%), Postives = 103/180 (57.22%), Query Frame = 1
Query:  397 ISGVAREGEITAILGASGSSKTTLMDAIAGRISKQRLK----GTVTLNGEVLGSKLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIG-DEQHXXXXXXXXXXXXXXXDIIHDPILLFLDEPISGLDFTSAFNVVKVLKQIAKSGSIVI 921
            + GVA  GE+ A++G+SG+ KTTL++A+A R S Q ++    G   LNG+ + +K ++   AYV QDDL    LT  E L+F A  R+PR L+  ++  RVD +I +L L     TIIG   +                + + DP LL  DEP SGLD  +A +VV+VLK++++ G  VI
Sbjct:  116 VCGVAYPGELLAVMGSSGAGKTTLLNALAFR-SPQGIQVSPSGMRLLNGQPVDAKEMQARCAYVQQDDLFIGSLTAREHLIFQAMVRMPRHLTYRQRVARVDQVIQELSLSKCQHTIIGVPGRVKGLSGGERKRLAFASEALTDPPLLICDEPTSGLDSFTAHSVVQVLKKLSQKGKTVI 294          
BLAST of FC877834 vs. ExPASy Swiss-Prot
Match: PDR15_ORYSJ (Pleiotropic drug resistance protein 15 OS=Oryza sativa subsp. japonica GN=PDR15 PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 6.722e-23
Identity = 66/221 (29.86%), Postives = 113/221 (51.13%), Query Frame = 1
Query:  262 LPNYPLLLSFNNLSYSVKVGQKLLPDLPF-FGSQXXXXXXXXXXXXISGVAREGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSKLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHXXXXXXXXXXXXXXXDIIHDPILLFLDEPISGLDFTSAFNVVKVLKQIAKSGSIVI 921
            LP  PL +SFN ++Y V        D+P    SQ            ISG  R G +TA++G SG+ KTTLMD ++GR +   ++G + ++G          IS Y  Q+D+    +T+ E+L+FSA  RLP+ ++ ++K+  VD +++ + L      I+G                   +++ +P ++F+DEP SGLD  +A  V++ ++    +G  V+
Sbjct:  901 LPFEPLYMSFNEINYYV--------DMPLEMKSQGVTADKLQLLSGISGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYIEGEIYISGYPKNQATFARISGYCEQNDIHSPQITVRESLLFSAFLRLPKEVNDQEKKIFVDEVMELVELTGLKDAIVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVNTGRTVV 1113          

HSP 2 Score: 75.485 bits (184), Expect = 4.829e-13
Identity = 54/205 (26.34%), Postives = 95/205 (46.34%), Query Frame = 1
Query:  397 ISGVAREGEITAILGASGSSKTTLMDAIAGRISKQ-RLKGTVTLNGEVLGSKLLKIISAYVMQDDLLYSMLTIEETLMFSAE-------FRLPRSLSKEKKR----------------------KRVDALIDQLGLRSAAMTIIGDEQHXXXXXXXXXXXXXXXDIIHDPILLFLDEPISGLDFTSAFNVVKVLKQIAKSGSIVI 921
            +SG+ R   +T +LG   S KTTL+ A+AG++       G VT NG  L   + +  +AY+ Q D+    +T++ETL FSA+       + L + L+K++++                       + D ++  LGL   A  I+GDE                  ++    +LF+DE  +GLD ++ F +++ ++QI   G   +
Sbjct:  215 VSGIVRPSRMTLLLGPPSSGKTTLLLALAGKLDPTLETSGEVTYNGYGLDEFVPQKTAAYISQHDVHAGEMTVKETLDFSAKCQGVGQRYELLKELAKKERQLGIYPDPEVDLFMKATSVEGSTLQTDYILRILGLDMCADVIVGDELRRGISGGQKKRLTTAEMLVGPTKVLFMDEISTGLDSSTTFQIIRCIQQIVHMGEATV 419          
The following BLAST results are available for this feature:
BLAST of FC877834 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 122
Match NameE-valueIdentityDescription
ABCGM_DICDI4.655e-2430.91ABC transporter G family member 22 OS=Dictyosteliu... [more]
ABCG2_BOVIN4.655e-2433.64ATP-binding cassette sub-family G member 2 OS=Bos ... [more]
AB24G_ARATH7.941e-2435.09ABC transporter G family member 24 OS=Arabidopsis ... [more]
AB10G_ARATH7.941e-2435.80ABC transporter G family member 10 OS=Arabidopsis ... [more]
ABCGI_DICDI1.769e-2336.57ABC transporter G family member 18 OS=Dictyosteliu... [more]
ABCGF_DICDI2.310e-2330.71ABC transporter G family member 15 OS=Dictyosteliu... [more]
WHITE_CERCA3.017e-2339.89Protein white OS=Ceratitis capitata GN=W PE=2 SV=1[more]
AB29G_ARATH3.017e-2328.51ABC transporter G family member 29 OS=Arabidopsis ... [more]
WHITE_DROME3.941e-2338.89Protein white OS=Drosophila melanogaster GN=w PE=1... [more]
PDR15_ORYSJ6.722e-2329.86Pleiotropic drug resistance protein 15 OS=Oryza sa... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA99CF05RM1 IVIA1 Citrus clementina cDNA clone IC0AAA99CF05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877834 ID=FC877834; Name=FC877834; organism=Citrus clementina; type=EST; length=923bp
CCTGCTACTTTGCATTATTAGCACTATCATTTTCCGCTGGCAAAAAATCC
AACTATGTCGCCGGCTTCTGCCGACGACAACCCTTTGCTCTTCATCAATC
AGAAACCAAATGTAGAGCTTCAAAACCAAAATCGAAGTCGCAGATTCACA
GGCTCCTCTGGCAGGTCCATCAACAAAGAGCTTGAAAGTGAGCCGATTAA
CGATTACTCTTCAGTCATCAGCATCGACATGCCGTATTCTAATGGTAGCA
GCAGTAACGAACTACCTAACTACCCATTACTTCTTTCATTCAACAACTTA
TCCTACAGTGTTAAAGTTGGTCAAAAATTGCTTCCGGATCTTCCATTTTT
TGGCTCACAAGATGATGTTAAGAAGACAAAGCTTTTACTGGATGATATTT
CTGGGGTAGCTAGAGAAGGTGAAATAACTGCGATTCTTGGTGCTAGTGGC
TCTAGTAAAACTACTTTGATGGACGCTATTGCTGGCCGCATATCAAAACA
GAGATTGAAAGGCACTGTGACATTGAATGGAGAGGTTTTGGGGTCAAAGC
TTTTGAAGATCATATCTGCTTATGTGATGCAAGATGATCTTTTGTATTCC
ATGCTAACCATAGAGGAAACCCTTATGTTCTCAGCGGAATTTAGGCTTCC
TCGATCTTTATCTAAAGAAAAAAAGCGAAAAAGAGTGGATGCTTTGATTG
ATCAACTCGGTCTTCGAAGTGCAGCCATGACCATAATTGGTGATGAGCAA
CACAGAGGTGTTTCAGGAGGCGAGCGCAGGCGGGTTTCTATCGGAGTTGA
TATAATTCATGATCCAATTCTCTTGTTCCTGGACGAACCCATATCAGGGC
TTGATTTCACAAGCGCGTTTAATGTTGTCAAGGTGTTAAAACAGATTGCA
AAAAGTGGAAGCATTGTCATCAT
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