FC877834

Overview
NameFC877834
Unique NameFC877834
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length923
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC877834 vs. ExPASy Swiss-Prot
Match: WHT1_CAEEL (ABC transporter ATP-binding protein/permease wht-1 OS=Caenorhabditis elegans GN=wht-1 PE=2 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 1.187e-19
Identity = 59/178 (33.15%), Postives = 100/178 (56.18%), Query Frame = 1
Query:  397 ISGVAREGEITAILGASGSSKTTLMDAIAGR-ISKQRLKGTVTLNGEVLGSKLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRL-PRSLSKEKKRKRVDALIDQLGLRSAAMTIIG-DEQHXXXXXXXXXXXXXXXDIIHDPILLFLDEPISGLDFTSAFNVVKVLKQIAKSGSIVI 921
            +SG+A  G++ AILG+SG+ KTTLM+ +  R ++   ++G++ ++G       ++ +SA+V Q D+    +T  E L F A  R+  +  S  +++ RV+ ++ Q+GL+  A T+IG   Q                +I+  P +LF DEP SGLD   A +VV+ L+ +A +G  VI
Sbjct:   13 VSGMAESGKLLAILGSSGAGKTTLMNVLTSRNLTNLDVQGSILIDGRRANKWKIREMSAFVQQHDMFVGTMTAREHLQFMARLRMGDQYYSDHERQLRVEQVLTQMGLKKCADTVIGIPNQLKGLSCGEKKRLSFASEILTCPKILFCDEPTSGLDAFMAGHVVQALRSLADNGMTVI 190          
BLAST of FC877834 vs. ExPASy Swiss-Prot
Match: ABCG5_RAT (ATP-binding cassette sub-family G member 5 OS=Rattus norvegicus GN=Abcg5 PE=2 SV=3)

HSP 1 Score: 97.0561 bits (240), Expect = 1.550e-19
Identity = 61/176 (34.66%), Postives = 98/176 (55.68%), Query Frame = 1
Query:  397 ISGVAREGEITAILGASGSSKTTLMDAIAGRISKQ-RLKGTVTLNGEVLGSKLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHXXXXXXXXXXXXXXXDIIHDPILLFLDEPISGLDFTSAFNVVKVLKQIAKSGSIVI 921
            +S     G+   ILG+SGS KTTL+DAI+GR+ +   L+G V +NG  L     +   +Y++Q D+  S LT+ ETL ++A   L RS S +   K+V+A++ +L L   A  +IG+                   ++ DP ++ LDEP +GLD  +A ++V +L ++A+   IVI
Sbjct:   73 VSLYIESGQTMCILGSSGSGKTTLLDAISGRLRRTGTLEGEVFVNGCELRRDQFQDCVSYLLQSDVFLSSLTVRETLRYTAMLAL-RSSSADFYDKKVEAVLTELSLSHVADQMIGNYNFGGISSGERRRVSIAAQLLQDPKVMMLDEPTTGLDCMTANHIVLLLVELARRNRIVI 247          
BLAST of FC877834 vs. ExPASy Swiss-Prot
Match: AB39G_ARATH (ABC transporter G family member 39 OS=Arabidopsis thaliana GN=ABCG39 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.550e-19
Identity = 62/232 (26.72%), Postives = 117/232 (50.43%), Query Frame = 1
Query:  247 SSSNE-------LPNYPLLLSFNNLSYSVKVGQKLLPDLPFFGSQXXXXXXXXXXXXISGVAREGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSKLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHXXXXXXXXXXXXXXXDIIHDPILLFLDEPISGLDFTSAFNVVKVLKQIAKSGSIVI 921
            SSSN+       LP  PL L+FNN++Y V +  ++        +Q            + G  R G +TA++G SG+ KTTLMD +AGR +   ++G+++++G          +S Y  Q+D+    +T+ E+L++SA  RL   +  + +   V+ +++ + L+    +I+G                   +++ +P ++F+DEP SGLD  +A  V++ ++    +G  V+
Sbjct:  834 SSSNKGPKRGMVLPFQPLSLAFNNVNYYVDMPSEMK-------AQGVEGDRLQLLRDVGGAFRPGILTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKNQTTFARVSGYCEQNDIHSPHVTVYESLIYSAWLRLSTDIDIKTRELFVEEVMELVELKPLRNSIVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1058          
BLAST of FC877834 vs. ExPASy Swiss-Prot
Match: WBC30_ARATH (Putative white-brown complex homolog protein 30 OS=Arabidopsis thaliana GN=WBC30 PE=2 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 2.024e-19
Identity = 53/171 (30.99%), Postives = 93/171 (54.39%), Query Frame = 1
Query:  397 ISGVAREGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSKLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHXXXXXXXXXXXXXXXDIIHDPILLFLDEPISGLDFTSAFNVVKVLKQIAKSG 909
            ++G    G ++A++G SG+ KTT + A+AG+ +     G + +NG        K I+ +V QDD+++  LT+EE L FSA  RL   +SK  K   ++ +I+ LGL+    +++G  +                +++ +P LL LDEP +GLD  S+  +++ L++ A  G
Sbjct:  485 VTGKIMPGRVSAVMGPSGAGKTTFLSALAGKATGCTRTGLILINGRNDSINSYKKITGFVPQDDVVHGNLTVEENLRFSARCRLSAYMSKADKVLIIERVIESLGLQHVRDSLVGTIEKRGISGGQRKRVNVGVEMVMEPSLLILDEPTTGLDSASSQLLLRALRREALEG 655          
BLAST of FC877834 vs. ExPASy Swiss-Prot
Match: ABCGE_DICDI (ABC transporter G family member 14 OS=Dictyostelium discoideum GN=abcG14 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.643e-19
Identity = 65/213 (30.52%), Postives = 113/213 (53.05%), Query Frame = 1
Query:  280 LLSFNNLSYSVKV--GQKLLPDLPFFGSQXXXXXXXXXXXXISGVAREGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSKLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGD-EQHXXXXXXXXXXXXXXXDIIHDPILLFLDEPISGLDFTSAFNVVKVLKQIAKSG 909
            + ++ N+ Y+VKV  G++LL +                   I G  + G++TA++G+SG+ KTTL+D +A R +   ++G   LNG  L     +I + YV Q D+    LT+ E L FSA+ R    +S E+K K V+ +++ + ++     +IG  E                 +++  P +LFLDEP SGLD  S++N++K ++++A +G
Sbjct:  804 IFTWQNIRYTVKVPGGERLLLN------------------NIEGWIKPGQMTALMGSSGAGKTTLLDVLAKRKTLGVVEGDSHLNGRELEIDFERI-TGYVEQMDVHNPGLTVREALRFSAKLRQEPEVSLEEKFKYVEHVLEMMEMKHLGDALIGTLETGVGISVEERKRLTIGVELVAKPQILFLDEPTSGLDAQSSYNIIKFIRKLADAG 997          
BLAST of FC877834 vs. ExPASy Swiss-Prot
Match: BROWN_DROME (Protein brown OS=Drosophila melanogaster GN=bw PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.452e-19
Identity = 61/166 (36.75%), Postives = 92/166 (55.42%), Query Frame = 1
Query:  400 SGVAREGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSKLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHXXXXXXXXXXXXXXXDIIHDPILLFLDEPISGLDFTSAFNVVKVLKQI 897
            SG  + G++ AILG SG+ KTTL+ AI+ R+ +  L G V LNG  +    +  IS+++ Q ++     T  E L F + F++ R  +K +KR+RV  L+  +GLR AA T I                    ++I DPI LF DEP +GLD  SA++V+K L+ +
Sbjct:   53 SGHMKTGDLIAILGGSGAGKTTLLAAISQRL-RGNLTGDVVLNGMAMERHQMTRISSFLPQFEINVKTFTAYEHLYFMSHFKMHRRTTKAEKRQRVADLLLAVGLRDAAHTRIQQ-----LSGGERKRLSLAEELITDPIFLFCDEPTTGLDSFSAYSVIKTLRHL 212          
BLAST of FC877834 vs. ExPASy Swiss-Prot
Match: ABCGJ_DICDI (ABC transporter G family member 19 OS=Dictyostelium discoideum GN=abcG19 PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 4.509e-19
Identity = 64/213 (30.05%), Postives = 113/213 (53.05%), Query Frame = 1
Query:  280 LLSFNNLSYSVKV--GQKLLPDLPFFGSQXXXXXXXXXXXXISGVAREGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSKLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGD-EQHXXXXXXXXXXXXXXXDIIHDPILLFLDEPISGLDFTSAFNVVKVLKQIAKSG 909
            + ++ N++Y+V V  G++LL D                   + G  + G++TA++G+SG+ KTTL+D +A R +   ++G   LNG+ L     + I+ YV Q D+    LT+ E L FSA+ R   S+  E+K   V+ +++ + ++     +IG  E                 +++  P +LFLDEP SGLD  S++N+VK ++++A +G
Sbjct:  817 IFTWQNINYTVPVKGGKRLLLD------------------NVEGWIKPGQMTALMGSSGAGKTTLLDVLAKRKTMGEVQGKCFLNGKPLEIDFER-ITGYVEQMDVHNPGLTVREALRFSAKLRQEPSVLLEEKFDYVEHVLEMMEMKHLGDALIGTLETGVGISVEERKRLTIGVELVAKPHILFLDEPTSGLDAQSSYNIVKFIRKLADAG 1010          
BLAST of FC877834 vs. ExPASy Swiss-Prot
Match: AB37G_ARATH (ABC transporter G family member 37 OS=Arabidopsis thaliana GN=ABCG37 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 4.509e-19
Identity = 59/221 (26.70%), Postives = 110/221 (49.77%), Query Frame = 1
Query:  262 LPNYPLLLSFNNLSYSVKVGQKLLPDLPF-FGSQXXXXXXXXXXXXISGVAREGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSKLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHXXXXXXXXXXXXXXXDIIHDPILLFLDEPISGLDFTSAFNVVKVLKQIAKSGSIVI 921
            LP  PL ++F +L+Y V        D+P     Q            I+G  R G +TA++G SG+ KTTL+D +AGR +   ++G + ++G     +    +S Y  Q D+    +T+EE++++SA  RL   +    K K V  +++ + L     +++G                   +++ +P ++F+DEP +GLD  +A  V++ +K +A +G  ++
Sbjct:  843 LPFKPLTVTFQDLNYFV--------DMPVEMRDQGYDQKKLQLLSDITGAFRPGILTALMGVSGAGKTTLLDVLAGRKTSGYIEGDIRISGFPKVQETFARVSGYCEQTDIHSPNITVEESVIYSAWLRLAPEIDATTKTKFVKQVLETIELDEIKDSLVGVTGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIV 1055          

HSP 2 Score: 73.1738 bits (178), Expect = 2.396e-12
Identity = 55/207 (26.57%), Postives = 91/207 (43.96%), Query Frame = 1
Query:  397 ISGVAREGEITAILGASGSSKTTLMDAIAGRISKQ-RLKGTVTLNGEVLGSKLLKIISAYVMQDDLLYSMLTIEETLMFSAEFR-------LPRSLSKEKKRKRV------------------------DALIDQLGLRSAAMTIIGDEQHXXXXXXXXXXXXXXXDIIHDPILLFLDEPISGLDFTSAFNVVKVLKQIAKSGSIVI 921
            ++G+ + G +T +LG     KTTL+ A++G +    +  G ++ NG  L   + +  SAY+ Q DL  + +T+ ET+ FSA  +       +   +SK +K K +                        D ++  LGL   A  +IGD                   I+     LF+DE  +GLD ++AF +VK L+Q A   S  +
Sbjct:  193 VNGIIKPGRLTLLLGPPSCGKTTLLKALSGNLENNLKCSGEISYNGHRLDEFVPQKTSAYISQYDLHIAEMTVRETVDFSARCQGVGSRTDIMMEVSKREKEKGIIPDTEVDAYMKAISVEGLQRSLQTDYILKILGLDICAEILIGDVMRRGISGGQKKRLTTAEMIVGPTKALFMDEITNGLDSSTAFQIVKSLQQFAHISSATV 399          
BLAST of FC877834 vs. ExPASy Swiss-Prot
Match: YN99_YEAST (Uncharacterized ABC transporter ATP-binding protein/permease YNR070W OS=Saccharomyces cerevisiae GN=YNR070W PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.889e-19
Identity = 62/180 (34.44%), Postives = 100/180 (55.56%), Query Frame = 1
Query:  397 ISGVAREGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSKL-----LKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHXXXXXXXXXXXXXXXDIIHDPILLFLDEPISGLDFTSAFNVVKVLKQIAKSGSIVI 921
            +SG    G +TA++G SG+ KTTL++ +A     QR  GT+T  G++L   L      K  + YV Q DL  + LT++E+L FSA  R P+S+   +K + V+ +I  L ++  +  ++G+  +                +    +LLFLDEP SGLD  SA+ VVK+LK++A +G  ++
Sbjct:  751 VSGYCVPGTLTALIGESGAGKTTLLNTLA-----QRNVGTIT--GDMLVDGLPMDASFKRRTGYVQQQDLHVAELTVKESLQFSARMRRPQSIPDAEKMEYVEKIISILEMQEFSEALVGEIGYGLNVEQRKKLSIGVELVGKPDLLLFLDEPTSGLDSQSAWAVVKMLKRLALAGQSIL 923          
BLAST of FC877834 vs. ExPASy Swiss-Prot
Match: WHITE_ANOAL (Protein white OS=Anopheles albimanus GN=W PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.889e-19
Identity = 67/183 (36.61%), Postives = 99/183 (54.10%), Query Frame = 1
Query:  397 ISGVAREGEITAILGASGSSKTTLMDAIAGR------ISKQRLKGTVTLNGEVLGSKLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSL-SKEKKRKRVDALIDQLGLRSAAMTIIG-DEQHXXXXXXXXXXXXXXXDIIHDPILLFLDEPISGLDFTSAFNVVKVLKQIAKSGSIVI 921
            ++GVAR GE+ A++G+SG+ KTTL++ +A R      IS   ++   TLNG  + ++ ++   AYV QDDL    LT +E LMF A  R+ R + +   K  RVD ++ +L L   A TIIG   +                + + DP LL  DEP S LD   A +V++VLK +A  G  +I
Sbjct:  122 VTGVARSGELLAVMGSSGAGKTTLLNELAFRSPPGVKISPNAIR---TLNGVPVTAEQMRARCAYVQQDDLFIPSLTTKEHLMFQAMLRMGRDVPATPIKMHRVDEVLQELSLVKCADTIIGVAGRVKGLSGGERKRTAFRSETLTDPHLLLCDEPTSSLDSFMAQSVLQVLKGMAMKGKTII 301          
The following BLAST results are available for this feature:
BLAST of FC877834 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 122
Match NameE-valueIdentityDescription
WHT1_CAEEL1.187e-1933.15ABC transporter ATP-binding protein/permease wht-1... [more]
ABCG5_RAT1.550e-1934.66ATP-binding cassette sub-family G member 5 OS=Ratt... [more]
AB39G_ARATH1.550e-1926.72ABC transporter G family member 39 OS=Arabidopsis ... [more]
WBC30_ARATH2.024e-1930.99Putative white-brown complex homolog protein 30 OS... [more]
ABCGE_DICDI2.643e-1930.52ABC transporter G family member 14 OS=Dictyosteliu... [more]
BROWN_DROME3.452e-1936.75Protein brown OS=Drosophila melanogaster GN=bw PE=... [more]
ABCGJ_DICDI4.509e-1930.05ABC transporter G family member 19 OS=Dictyosteliu... [more]
AB37G_ARATH4.509e-1926.70ABC transporter G family member 37 OS=Arabidopsis ... [more]
YN99_YEAST5.889e-1934.44Uncharacterized ABC transporter ATP-binding protei... [more]
WHITE_ANOAL5.889e-1936.61Protein white OS=Anopheles albimanus GN=W PE=3 SV=... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA99CF05RM1 IVIA1 Citrus clementina cDNA clone IC0AAA99CF05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877834 ID=FC877834; Name=FC877834; organism=Citrus clementina; type=EST; length=923bp
CCTGCTACTTTGCATTATTAGCACTATCATTTTCCGCTGGCAAAAAATCC
AACTATGTCGCCGGCTTCTGCCGACGACAACCCTTTGCTCTTCATCAATC
AGAAACCAAATGTAGAGCTTCAAAACCAAAATCGAAGTCGCAGATTCACA
GGCTCCTCTGGCAGGTCCATCAACAAAGAGCTTGAAAGTGAGCCGATTAA
CGATTACTCTTCAGTCATCAGCATCGACATGCCGTATTCTAATGGTAGCA
GCAGTAACGAACTACCTAACTACCCATTACTTCTTTCATTCAACAACTTA
TCCTACAGTGTTAAAGTTGGTCAAAAATTGCTTCCGGATCTTCCATTTTT
TGGCTCACAAGATGATGTTAAGAAGACAAAGCTTTTACTGGATGATATTT
CTGGGGTAGCTAGAGAAGGTGAAATAACTGCGATTCTTGGTGCTAGTGGC
TCTAGTAAAACTACTTTGATGGACGCTATTGCTGGCCGCATATCAAAACA
GAGATTGAAAGGCACTGTGACATTGAATGGAGAGGTTTTGGGGTCAAAGC
TTTTGAAGATCATATCTGCTTATGTGATGCAAGATGATCTTTTGTATTCC
ATGCTAACCATAGAGGAAACCCTTATGTTCTCAGCGGAATTTAGGCTTCC
TCGATCTTTATCTAAAGAAAAAAAGCGAAAAAGAGTGGATGCTTTGATTG
ATCAACTCGGTCTTCGAAGTGCAGCCATGACCATAATTGGTGATGAGCAA
CACAGAGGTGTTTCAGGAGGCGAGCGCAGGCGGGTTTCTATCGGAGTTGA
TATAATTCATGATCCAATTCTCTTGTTCCTGGACGAACCCATATCAGGGC
TTGATTTCACAAGCGCGTTTAATGTTGTCAAGGTGTTAAAACAGATTGCA
AAAAGTGGAAGCATTGTCATCAT
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