FC877837

Overview
NameFC877837
Unique NameFC877837
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length842
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC877837 vs. ExPASy Swiss-Prot
Match: ATL3G_ARATH (RING-H2 finger protein ATL3G OS=Arabidopsis thaliana GN=ATL3G PE=2 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 9.627e-18
Identity = 48/106 (45.28%), Postives = 65/106 (61.32%), Query Frame = 3
Query:  459 GLDDSVINTFPTFLYSAVR---ELKIGKGSL----ECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQPGE-TP-SSFIPVLNPDVGSS 749
            GLDDSVI T P FLYSA     +  +GK S     +CAVCL EF + + +R +P C H FH++CID WL +H  CP+CR  ++   G  TP S F+P++ P +  S
Sbjct:  120 GLDDSVIKTLPLFLYSAAACTGKPAVGKTSAANCRDCAVCLLEFEEGDYVRTLPLCFHAFHLECIDEWLRSHPNCPLCRTAILGSAGVLTPMSPFVPLMAPRIRPS 225          
BLAST of FC877837 vs. ExPASy Swiss-Prot
Match: ATL3L_ARATH (RING-H2 finger protein ATL3L OS=Arabidopsis thaliana GN=ATL3L PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 6.240e-17
Identity = 59/178 (33.15%), Postives = 90/178 (50.56%), Query Frame = 3
Query:  303 MAIVTVILVSVFFILGFFSV---YIRQCTERGRNSPDAFATIIGGINQ--RSRRGARGLDDSVINTFPTFLYSAVRELKIGKGSLE-CAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVP-QPGETPS-------SFIPVLNPDVGSSRLEQGSDNIQEISST 794
            +A V ++ V+V  IL F S      R+   R R    A    +       +S      LD +V+   P F+YS    +K  +  LE C+VCL+EF +++  R++PKC HVFH+DCID W  + ++CP+CRA + P QP   P        S  P+ + + GSS     S++    SS+
Sbjct:   30 LASVIILFVAVILILCFHSYARWLFRRQNRRIRRRISAHLRSLAAARDPTQSSSSLSPLDPTVLEKIPIFVYS----VKTHESPLEECSVCLSEFEEDDEGRVLPKCGHVFHVDCIDTWFRSRSSCPLCRAPVQPAQPVTEPEPVAAVFPSVKPIEDTEAGSSSSSDESESSTPSSSS 203          
BLAST of FC877837 vs. ExPASy Swiss-Prot
Match: ATL5G_ARATH (Probable RING-H2 finger protein ATL5G OS=Arabidopsis thaliana GN=ATL5G PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.390e-16
Identity = 51/179 (28.49%), Postives = 88/179 (49.16%), Query Frame = 3
Query:  264 DAFSVTGPKFNGTMAIVTVILVSVFFILGFFSVYIRQCTERGRNSPDAFATI------IGGINQRSRRGARGLDDSVINTFPTFLYSAVRELKIGKGSLE---CAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANL--VPQPGETPSSFIPVLNPDVGSSRLEQGS 767
            D  S +   F+  +  +  IL S   ++ ++++  + C    + S      +           QR      GL++S+I +   + Y      K G G ++   C+VCL+EF + E+LRL+PKC+H FH+ CID WL +H+ CP+CRA +  V  P  +    + V+  +  +S  + GS
Sbjct:   45 DDSSSSSSSFSPLLIALIGILTSALILVSYYTLISKYCHRHHQTSSSETLNLNHNGEGFFSSTQRISTNGDGLNESMIKSITVYKY------KSGDGFVDGSDCSVCLSEFEENESLRLLPKCNHAFHLPCIDTWLKSHSNCPLCRAFVTGVNNPTASVGQNVSVVVANQSNSAHQTGS 217          
BLAST of FC877837 vs. ExPASy Swiss-Prot
Match: ATL1F_ARATH (RING-H2 finger protein ATL1F OS=Arabidopsis thaliana GN=ATL1F PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.816e-16
Identity = 51/137 (37.23%), Postives = 68/137 (49.64%), Query Frame = 3
Query:  312 VTVILV-SVFFIL--GFFSVYIRQC----------TERGRNSPDAFATIIGGINQRSRRGARGLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANL 683
            VT++L  S+ FI+  GFFS +   C            R RN P         I   +     GLD  +I +FP + YS         G+ +C++CL EF D++T+RLI  C+H FH  CID W   H TCPVCR  L
Sbjct:   74 VTIVLTGSLLFIIFTGFFSFFFCGCLFRKLMRIWNNHRNRNRPSNL------IQPSNPPENLGLDSKIIESFPEYPYSVKDH-----GTDQCSICLTEFMDDDTIRLISTCNHSFHTICIDLWFEGHKTCPVCRREL 199          
BLAST of FC877837 vs. ExPASy Swiss-Prot
Match: ATL1R_ARATH (RING-H2 finger protein ATL1R OS=Arabidopsis thaliana GN=ATL1R PE=2 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 2.371e-16
Identity = 54/173 (31.21%), Postives = 84/173 (48.55%), Query Frame = 3
Query:  285 PKFNGTMAIV-TVILVSVFFILGFFSV----YIRQCTERGRNSPDAFATIIGGINQRSRRGARGLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLV----PQPGETPSSFIPVLNPDVGSSRLEQGSDNI 776
            P FN  + ++  V+L ++  I+G  +V    ++R+   R R S       +   N       +GL   V+ + P   YS   +    +  +ECA+CL EF   + LR++P+C H FH+ CID WL +H++CP CR  LV     + G  P S      PD    + E G DN+
Sbjct:   22 PPFNSDLVLILAVLLCALTCIIGLIAVSRCAWLRRIASRNR-SDQTHPPPVAAAN-------KGLKKKVLRSLPKLTYSP--DSPPAEKLVECAICLTEFAAGDELRVLPQCGHGFHVSCIDTWLGSHSSCPSCRQILVVTRCHKCGGLPGSSSSGPEPDTRIKQREDGPDNL 184          
BLAST of FC877837 vs. ExPASy Swiss-Prot
Match: ATL3J_ARATH (RING-H2 finger protein ATL3J OS=Arabidopsis thaliana GN=ATL3J PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.097e-16
Identity = 55/167 (32.93%), Postives = 90/167 (53.89%), Query Frame = 3
Query:  306 AIVTVILVSVFFILGFFSV-YIRQCTERGRNS---PDAFATIIGGINQRSRR--GARGLDD----SVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQPGETPSSFIPVLNPDVG---SSRLEQGS 767
            +++ +IL+ +  +L   S+ ++ +C  R  +    P + ++ +  +   SRR  G R   +    SV+++ P F +S+V        S +CAVCL++F  E+ LRL+P C H FH DCID WL ++ TCP+CR+ L     +   S   V + + G   S RLE GS
Sbjct:   27 SVLVIILILLMTLLISVSICFLLRCLNRCSHRSVLPLSSSSSVATVTSDSRRFSGHRVSPETERSSVLDSLPIFKFSSVTRRSSSMNSGDCAVCLSKFEPEDQLRLLPLCCHAFHADCIDIWLVSNQTCPLCRSPLFASESDLMKSLAVVGSNNGGGENSFRLEIGS 193          
BLAST of FC877837 vs. ExPASy Swiss-Prot
Match: ATL3I_ARATH (RING-H2 finger protein ATL3I OS=Arabidopsis thaliana GN=ATL3I PE=2 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 3.097e-16
Identity = 38/75 (50.67%), Postives = 50/75 (66.67%), Query Frame = 3
Query:  459 GLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANL 683
            GLD + I+  P FLY  V      +   +CAVCLNEF D + LRL+P CSH FH+ CID WL +++TCP+CR +L
Sbjct:  180 GLDQTAIDALPVFLYGNVTISL--EQPFDCAVCLNEFSDTDKLRLLPVCSHAFHLHCIDTWLLSNSTCPLCRRSL 252          
BLAST of FC877837 vs. ExPASy Swiss-Prot
Match: ATL2M_ARATH (RING-H2 finger protein ATL2M OS=Arabidopsis thaliana GN=ATL2M PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.097e-16
Identity = 39/90 (43.33%), Postives = 57/90 (63.33%), Query Frame = 3
Query:  459 GLDDSVINTFPTFLYS-----AVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQPGETPSS 713
            GLD +VIN++P F +S     A  +   G G   C++CL E+ + E LR++P+C H FH+ C+DAWL  + +CPVCR + +P P  TP S
Sbjct:  104 GLDQAVINSYPKFHFSKDTSAASSDGFGGGGDTTCSICLCEYKEAEMLRMMPECKHYFHLCCLDAWLKLNGSCPVCRNSPLPTPTSTPLS 193          
BLAST of FC877837 vs. ExPASy Swiss-Prot
Match: ATL2N_ARATH (RING-H2 finger protein ATL2N OS=Arabidopsis thaliana GN=ATL2N PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.045e-16
Identity = 61/165 (36.97%), Postives = 88/165 (53.33%), Query Frame = 3
Query:  279 TGPKFNGTMAI--VTVILVSVFFILGFFSVYIRQCTER-GRNSPDAFATIIGGINQRSRRGARGLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVP--QPGET--PSSFIPVLNPDVGSSR 752
            +G   NG + +  V V+ V+V  IL F S Y R    R  R       + +  ++   R  A  LD +V++  P F+YS+ +     +   EC+VCL+EF +E+  RL+PKC H FH+DCID W  + +TCP+CRA + P  Q  ET   SS  P+  P  G  R
Sbjct:   20 SGYALNGKIMLSSVIVLFVAVIMILCFHS-YARWLFRRHNRRIRRRIRSHLRTLSASPRDQA--LDQAVLDKIPIFVYSS-KNPPPPEEKEECSVCLSEFEEEDEGRLLPKCGHSFHVDCIDTWFRSRSTCPLCRAPVQPPFQVIETGSSSSSSPLTFPTEGCER 180          
BLAST of FC877837 vs. ExPASy Swiss-Prot
Match: ATL2K_ARATH (RING-H2 finger protein ATL2K OS=Arabidopsis thaliana GN=ATL2K PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 5.283e-16
Identity = 50/150 (33.33%), Postives = 76/150 (50.67%), Query Frame = 3
Query:  309 IVTVILVSVFFILGF-FSVYIRQCTERGRNSPDAFATIIGGINQRSRRGARGLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRA-------NLVPQPGETP-SSFIPVLN 731
            +VT +  S+  I+ F + +Y +    R     D   +++      S+   RGLD  VI + PTF+      +K      ECAVCL+   +++  R++P C HVFH+ C+D WL+  +TCPVCR         L P+P E P   F P L+
Sbjct:   30 LVTTVSFSIIIIIVFVYYLYAKFVLHRRSAFQDLSFSVV------SQPPKRGLDSLVIASLPTFVVG----IKNDVAGTECAVCLSLLEEKDNARMLPNCKHVFHVSCVDTWLTTQSTCPVCRTEAEPSHPRLEPEPREGPVGDFAPPLD 169          
The following BLAST results are available for this feature:
BLAST of FC877837 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 79
Match NameE-valueIdentityDescription
ATL3G_ARATH9.627e-1845.28RING-H2 finger protein ATL3G OS=Arabidopsis thalia... [more]
ATL3L_ARATH6.240e-1733.15RING-H2 finger protein ATL3L OS=Arabidopsis thalia... [more]
ATL5G_ARATH1.390e-1628.49Probable RING-H2 finger protein ATL5G OS=Arabidops... [more]
ATL1F_ARATH1.816e-1637.23RING-H2 finger protein ATL1F OS=Arabidopsis thalia... [more]
ATL1R_ARATH2.371e-1631.21RING-H2 finger protein ATL1R OS=Arabidopsis thalia... [more]
ATL3J_ARATH3.097e-1632.93RING-H2 finger protein ATL3J OS=Arabidopsis thalia... [more]
ATL3I_ARATH3.097e-1650.67RING-H2 finger protein ATL3I OS=Arabidopsis thalia... [more]
ATL2M_ARATH3.097e-1643.33RING-H2 finger protein ATL2M OS=Arabidopsis thalia... [more]
ATL2N_ARATH4.045e-1636.97RING-H2 finger protein ATL2N OS=Arabidopsis thalia... [more]
ATL2K_ARATH5.283e-1633.33RING-H2 finger protein ATL2K OS=Arabidopsis thalia... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA99CF06RM1 IVIA1 Citrus clementina cDNA clone IC0AAA99CF06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877837 ID=FC877837; Name=FC877837; organism=Citrus clementina; type=EST; length=842bp
ATTTTTTTTTCTTACGTTTTTCCGTATGCTTTTGCTTTGTCTTAGAAACA
AATCTTCAGAGCTCCGAGCAAAAGAACCACTCATGATCATGAACAACAAC
TACAATTACTTTACTTGAAGTGATGACTGTTCTAACGCCTAATCCGAGCC
GTTCAATTTTCAATCCTATGATATGCGATCATGGCGTGGTCAACTTTCTT
TTTCTCTTTCTCTATCTCCACGCCTTACCGTATGTCACCGCACAAACTCC
ACCGCCGCCACCGGACGCGTTTTCTGTTACGGGGCCGAAATTCAACGGTA
CTATGGCCATAGTAACCGTAATATTGGTCAGCGTTTTCTTCATCTTGGGC
TTCTTCTCCGTTTACATCCGTCAGTGCACTGAAAGGGGCCGAAACAGCCC
TGACGCTTTTGCTACTATAATTGGAGGGATCAACCAACGGTCCCGCAGAG
GGGCGCGCGGGCTTGACGATTCTGTTATCAACACTTTTCCCACCTTCCTC
TACTCGGCGGTCAGAGAGCTTAAAATCGGCAAGGGTTCTTTAGAATGCGC
GGTTTGCTTGAACGAGTTTGGAGATGAGGAAACGCTGCGTTTGATACCAA
AGTGTAGCCACGTGTTTCACATGGATTGCATCGACGCTTGGTTGTCTGCT
CATAACACGTGTCCCGTCTGCCGCGCAAATTTGGTGCCACAACCTGGCGA
AACTCCCTCCAGCTTCATTCCAGTTCTTAACCCGGATGTTGGCTCGAGTC
GATTGGAACAAGGTTCAGATAATATTCAAGAGATTTCATCGACTGATGTG
CAGAGGAGAGATGAAGAAGCTCCTGACGTGATCCTGACCAAT
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