FC877837

Overview
NameFC877837
Unique NameFC877837
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length842
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC877837 vs. ExPASy Swiss-Prot
Match: ATL5B_ARATH (RING-H2 finger protein ATL5B OS=Arabidopsis thaliana GN=ATL5B PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 9.962e-15
Identity = 44/137 (32.12%), Postives = 74/137 (54.01%), Query Frame = 3
Query:  309 IVTVILVSVFFILGFFSVY--IRQCTERGRNSPDAFATIIGGINQRSRRGARGLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQPGETPSS 713
            I+  +L ++   LG  SV   + +CT R   + D   T        +   A+G+    +   P   YS   ++K    + EC +CL +F + ET+R++PKC+H FH+ CID WL +H++CP CR +L+    +TP++
Sbjct:   44 ILAALLCALICALGINSVLRCVLRCTRRFTPNEDPVDT--------NANVAKGIKKRALKVIPVDSYSPELKMK----ATECLICLGDFVEGETVRVLPKCNHGFHVKCIDTWLLSHSSCPTCRQSLLEH--QTPAN 166          
BLAST of FC877837 vs. ExPASy Swiss-Prot
Match: ATL1I_ARATH (RING-H2 finger protein ATL1I OS=Arabidopsis thaliana GN=ATL1I PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 9.962e-15
Identity = 45/128 (35.16%), Postives = 67/128 (52.34%), Query Frame = 3
Query:  303 MAIVTVILVSVFFILGFFSVYIRQCTERGRNSPDAFATIIGGINQRSRRGARGLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLV 686
            + +++V++  +   LG    YI +C  R R S    +  I G++       +G++   +  FP   YS    L  G G  EC +CL++F   E +R++PKC H FH+ CID WL  H TCP CR  LV
Sbjct:   60 LMLLSVLICGIICCLGLH--YIIRCAFR-RTSSFMISEPIAGLSTPCGSSNKGINKKALRMFPVVSYSPEMNLP-GLGE-ECVICLSDFVSGEQIRMLPKCHHGFHVRCIDKWLQQHLTCPKCRHCLV 182          
BLAST of FC877837 vs. ExPASy Swiss-Prot
Match: ATL5A_ARATH (RING-H2 finger protein ATL5A OS=Arabidopsis thaliana GN=ATL5A PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.786e-14
Identity = 48/136 (35.29%), Postives = 71/136 (52.21%), Query Frame = 3
Query:  291 FNGTMAIV-TVILVSVFFILGFFSVYIRQCTER---GRNSPDAFATIIGGINQRSRRGARGLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLV 686
            F+  M I+   +L ++   LG  S+   +C  R   G +S  A  T+             GL    +  FP   Y +  E+KI   + ECA+CL EF D E +R++P C+H FHM CID WL +H++CP CR +L+
Sbjct:   30 FDANMVIILAALLCALILALGLNSIL--RCAMRCGFGLSSSAAAGTVAD---------RAGLKKRELKKFPVAEYGS-GEVKIA--ATECAICLGEFADGERVRVLPPCNHSFHMSCIDTWLVSHSSCPNCRHSLI 151          
BLAST of FC877837 vs. ExPASy Swiss-Prot
Match: ATL1K_ARATH (RING-H2 finger protein ATL1K OS=Arabidopsis thaliana GN=ATL1K PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.786e-14
Identity = 42/128 (32.81%), Postives = 67/128 (52.34%), Query Frame = 3
Query:  303 MAIVTVILVSVFFILGFFSVYIRQCTERGRNSPDAFATIIGGINQRSRRGARGLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLV 686
            M ++++++  +   LG    YI +C  R R++    +  +  ++       +G+    +  FP   YS   E+ +     EC +CL++F   E LRL+PKC+H FH+ CID WL  H TCP CR  LV
Sbjct:   59 MMLLSILICGIICCLGLH--YIIRCALR-RSTRFMISEPVPSLSSTRGSSNKGIKKKALRMFPVVSYSP--EMNLPGLDEECVICLSDFVSGEQLRLLPKCNHGFHVRCIDKWLQQHLTCPKCRNCLV 181          
BLAST of FC877837 vs. ExPASy Swiss-Prot
Match: ATL4F_ARATH (RING-H2 finger protein ATL4F OS=Arabidopsis thaliana GN=ATL4F PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.457e-14
Identity = 39/132 (29.55%), Postives = 67/132 (50.76%), Query Frame = 3
Query:  459 GLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQPG-----ETPSSFIPVLNPDVGSSRLEQGSDNIQE--ISSTDVQRRDEEAPDVI 833
            GL   +    P  +Y             +C+VCL ++  EE L+ +P C H FHM+CID WL++H TCP+CR +L+P+P      ++      + N + G +  +  S +  E  I   DV+  + ++ +V+
Sbjct:   72 GLSKDIREMLPIVIYKE----SFTVNDTQCSVCLGDYQAEEKLQQMPSCGHTFHMECIDLWLTSHTTCPLCRLSLIPKPSVDLSHQSIEIVSSIENTNGGEASTQPDSQSATEAIIHIDDVEEGNRDSIEVV 199          
BLAST of FC877837 vs. ExPASy Swiss-Prot
Match: ATL1P_ARATH (RING-H2 finger protein ATL1P OS=Arabidopsis thaliana GN=ATL1P PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.879e-13
Identity = 36/90 (40.00%), Postives = 52/90 (57.78%), Query Frame = 3
Query:  531 KGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQPGETPSSFIPVLNPDVGSS-RLEQGSDNIQEISSTD 797
            K  LEC++CL+E    +  RL+PKC+H FH++CID W  +H+TCP+CR                VL P+  SS R+EQ  DN +   +T+
Sbjct:  122 KDGLECSICLSELVKGDKARLLPKCNHSFHVECIDMWFQSHSTCPICRNT--------------VLGPEQASSKRVEQVPDNAENAGTTN 197          
BLAST of FC877837 vs. ExPASy Swiss-Prot
Match: ATL5E_ARATH (Putative RING-H2 finger protein ATL5E OS=Arabidopsis thaliana GN=ATL5E PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.205e-13
Identity = 44/142 (30.99%), Postives = 70/142 (49.30%), Query Frame = 3
Query:  303 MAIVTVILVSVFFILGFFSVYIRQCTERGRNSPDAFATIIGGINQRSRRGARGLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQPGETP-SSFIPV 725
            +AI   ILV + FI+    + IR    +     +A + ++  +   +     GLD  VI ++P  +    R L        C++CL ++   E +R IP+C+H FH DC+D WL    TCP+CR +  P    TP S  +P+
Sbjct:   17 IAIAVSILVLISFIMLASYICIRS---KSTGRDEATSDVVLDLPSPAAEVKLGLDRPVIESYPRIVLGDSRRLPRPNNG-PCSICLCDYEAREPVRCIPECNHCFHTDCVDEWLRTSATCPLCRNSPAPSRLATPLSDLVPL 154          
BLAST of FC877837 vs. ExPASy Swiss-Prot
Match: ATL5D_ARATH (Putative RING-H2 finger protein ATL5D OS=Arabidopsis thaliana GN=ATL5D PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.186e-13
Identity = 34/87 (39.08%), Postives = 50/87 (57.47%), Query Frame = 3
Query:  459 GLDDSVINTFPTFLYSAVR-ELKIGKGSLE---CAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQPGETP 707
            GL + VI  FP   Y   R    + K S     C++CL ++   + +R++P C+H+FH +C+D WL  H TCPVCR + +P P  TP
Sbjct:   96 GLTEEVIKGFPKLPYEEARVSYSLQKESSTTSCCSICLADYKKMDMIRVLPDCNHLFHDNCVDPWLRLHPTCPVCRTSPLPSPAMTP 182          
BLAST of FC877837 vs. ExPASy Swiss-Prot
Match: ATL1E_ARATH (RING-H2 finger protein ATL1E OS=Arabidopsis thaliana GN=ATL1E PE=2 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 5.467e-13
Identity = 31/72 (43.06%), Postives = 44/72 (61.11%), Query Frame = 3
Query:  459 GLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCR 674
            GLD S I ++        R L  G   + C +CL+E+  +ET+R +P+C H FH+ CID WL  H++CPVCR
Sbjct:  225 GLDQSTIESYKKVELGESRRLP-GTNGIICPICLSEYASKETVRCMPECDHCFHVQCIDEWLKIHSSCPVCR 295          
BLAST of FC877837 vs. ExPASy Swiss-Prot
Match: ATL4L_ARATH (RING-H2 finger protein ATL4L OS=Arabidopsis thaliana GN=ATL4L PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 9.325e-13
Identity = 28/54 (51.85%), Postives = 39/54 (72.22%), Query Frame = 3
Query:  528 GKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVP 689
            G  S ECA+C+ EF + E +R++P CSH FH+ CID WL++ ++CP CR  LVP
Sbjct:  107 GDSSTECAICITEFSEGEEIRILPLCSHAFHVACIDKWLTSRSSCPSCRRILVP 160          
The following BLAST results are available for this feature:
BLAST of FC877837 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 79
Match NameE-valueIdentityDescription
ATL5B_ARATH9.962e-1532.12RING-H2 finger protein ATL5B OS=Arabidopsis thalia... [more]
ATL1I_ARATH9.962e-1535.16RING-H2 finger protein ATL1I OS=Arabidopsis thalia... [more]
ATL5A_ARATH3.786e-1435.29RING-H2 finger protein ATL5A OS=Arabidopsis thalia... [more]
ATL1K_ARATH3.786e-1432.81RING-H2 finger protein ATL1K OS=Arabidopsis thalia... [more]
ATL4F_ARATH6.457e-1429.55RING-H2 finger protein ATL4F OS=Arabidopsis thalia... [more]
ATL1P_ARATH1.879e-1340.00RING-H2 finger protein ATL1P OS=Arabidopsis thalia... [more]
ATL5E_ARATH3.205e-1330.99Putative RING-H2 finger protein ATL5E OS=Arabidops... [more]
ATL5D_ARATH4.186e-1339.08Putative RING-H2 finger protein ATL5D OS=Arabidops... [more]
ATL1E_ARATH5.467e-1343.06RING-H2 finger protein ATL1E OS=Arabidopsis thalia... [more]
ATL4L_ARATH9.325e-1351.85RING-H2 finger protein ATL4L OS=Arabidopsis thalia... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA99CF06RM1 IVIA1 Citrus clementina cDNA clone IC0AAA99CF06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877837 ID=FC877837; Name=FC877837; organism=Citrus clementina; type=EST; length=842bp
ATTTTTTTTTCTTACGTTTTTCCGTATGCTTTTGCTTTGTCTTAGAAACA
AATCTTCAGAGCTCCGAGCAAAAGAACCACTCATGATCATGAACAACAAC
TACAATTACTTTACTTGAAGTGATGACTGTTCTAACGCCTAATCCGAGCC
GTTCAATTTTCAATCCTATGATATGCGATCATGGCGTGGTCAACTTTCTT
TTTCTCTTTCTCTATCTCCACGCCTTACCGTATGTCACCGCACAAACTCC
ACCGCCGCCACCGGACGCGTTTTCTGTTACGGGGCCGAAATTCAACGGTA
CTATGGCCATAGTAACCGTAATATTGGTCAGCGTTTTCTTCATCTTGGGC
TTCTTCTCCGTTTACATCCGTCAGTGCACTGAAAGGGGCCGAAACAGCCC
TGACGCTTTTGCTACTATAATTGGAGGGATCAACCAACGGTCCCGCAGAG
GGGCGCGCGGGCTTGACGATTCTGTTATCAACACTTTTCCCACCTTCCTC
TACTCGGCGGTCAGAGAGCTTAAAATCGGCAAGGGTTCTTTAGAATGCGC
GGTTTGCTTGAACGAGTTTGGAGATGAGGAAACGCTGCGTTTGATACCAA
AGTGTAGCCACGTGTTTCACATGGATTGCATCGACGCTTGGTTGTCTGCT
CATAACACGTGTCCCGTCTGCCGCGCAAATTTGGTGCCACAACCTGGCGA
AACTCCCTCCAGCTTCATTCCAGTTCTTAACCCGGATGTTGGCTCGAGTC
GATTGGAACAAGGTTCAGATAATATTCAAGAGATTTCATCGACTGATGTG
CAGAGGAGAGATGAAGAAGCTCCTGACGTGATCCTGACCAAT
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